RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 OSTCQ9NRP0 149 aa12.82□□□□□ -0.36
COL7A1-207ENST00000467985 IGHV3-30P01768 117 aa12.81□□□□□ -0.36
COL7A1-207ENST00000467985 IGHV3-33P01772 117 aa12.81□□□□□ -0.36
COL7A1-207ENST00000467985 CXCL1P09341 107 aa12.81□□□□□ -0.36
COL7A1-207ENST00000467985 IGHV3-30-3P0DP02 117 aa12.81□□□□□ -0.36
COL7A1-207ENST00000467985 IGHV3-30-5P0DP03 117 aa12.81□□□□□ -0.36
COL7A1-207ENST00000467985 TPPP3Q9BW30 176 aa12.81□□□□□ -0.36
COL7A1-207ENST00000467985 Q9HAA7 133 aa12.8□□□□□ -0.36
COL7A1-207ENST00000467985 A0A087WWL8 130 aa12.79□□□□□ -0.36
COL7A1-207ENST00000467985 A8MWL6 223 aa12.79□□□□□ -0.36
COL7A1-207ENST00000467985 GZMBP10144 247 aa12.79□□□□□ -0.36
COL7A1-207ENST00000467985 TM2D2Q9BX73 214 aa12.79□□□□□ -0.36
COL7A1-207ENST00000467985 CARHSP1Q9Y2V2 147 aaKnown RBP12.79□□□□□ -0.36
COL7A1-207ENST00000467985 TRBV10-1A0A0K0K1A3 114 aa12.78□□□□□ -0.36
COL7A1-207ENST00000467985 PPP1R2P9O14990 202 aa12.78□□□□□ -0.36
COL7A1-207ENST00000467985 APOC3P02656 99 aa12.78□□□□□ -0.36
COL7A1-207ENST00000467985 MT-ND4LP03901 98 aa12.78□□□□□ -0.36
COL7A1-207ENST00000467985 Q9UF83 564 aa12.78□□□□□ -0.36
COL7A1-207ENST00000467985 TRAV8-3A0A0A6YYJ7 113 aa12.77□□□□□ -0.37
COL7A1-207ENST00000467985 LRCOL1A6NCL2 159 aa12.77□□□□□ -0.37
COL7A1-207ENST00000467985 FUSP35637 526 aaKnown RBP eCLIP12.77□□□□□ -0.37
COL7A1-207ENST00000467985 CT83Q5H943 113 aa12.77□□□□□ -0.37
COL7A1-207ENST00000467985 FER1L6-AS1Q8NA97 138 aa12.77□□□□□ -0.37
COL7A1-207ENST00000467985 NTN5Q8WTR8 489 aaPredicted RBP12.77□□□□□ -0.37
COL7A1-207ENST00000467985 RPL36AP83881 106 aaKnown RBP12.76□□□□□ -0.37
COL7A1-207ENST00000467985 C10orf91Q5T1B1 145 aa12.76□□□□□ -0.37
COL7A1-207ENST00000467985 RPL36ALQ969Q0 106 aaKnown RBP12.76□□□□□ -0.37
COL7A1-207ENST00000467985 URGCP-MRPS24S4R325 110 aa12.76□□□□□ -0.37
COL7A1-207ENST00000467985 OR5AL1P0C617 328 aa12.75□□□□□ -0.37
COL7A1-207ENST00000467985 GCSHP23434 173 aa12.75□□□□□ -0.37
COL7A1-207ENST00000467985 SVBPQ8N300 66 aa12.75□□□□□ -0.37
COL7A1-207ENST00000467985 TSKUQ8WUA8 353 aa12.75□□□□□ -0.37
COL7A1-207ENST00000467985 BORCS7Q96B45 105 aa12.75□□□□□ -0.37
COL7A1-207ENST00000467985 ANAPC16Q96DE5 110 aa12.75□□□□□ -0.37
COL7A1-207ENST00000467985 SSBP4Q9BWG4 385 aaPredicted RBP12.75□□□□□ -0.37
COL7A1-207ENST00000467985 V9GYV3 84 aa12.75□□□□□ -0.37
COL7A1-207ENST00000467985 SNAI2O43623 268 aa12.74□□□□□ -0.37
COL7A1-207ENST00000467985 RAB4BP61018 213 aa12.74□□□□□ -0.37
COL7A1-207ENST00000467985 SSTP61278 116 aa12.74□□□□□ -0.37
COL7A1-207ENST00000467985 SPANXN1Q5VSR9 72 aa12.74□□□□□ -0.37
COL7A1-207ENST00000467985 OR10AG1Q8NH19 301 aa12.74□□□□□ -0.37
COL7A1-207ENST00000467985 TRBV7-3A0A075B6L6 115 aa12.73□□□□□ -0.37
COL7A1-207ENST00000467985 IGLV5-52A0A0A0MRZ9 124 aa12.73□□□□□ -0.37
COL7A1-207ENST00000467985 F2Z2F3 143 aa12.73□□□□□ -0.37
COL7A1-207ENST00000467985 SNAPINO95295 136 aa12.73□□□□□ -0.37
COL7A1-207ENST00000467985 KRTAP10-1P60331 282 aa12.73□□□□□ -0.37
COL7A1-207ENST00000467985 Q8N814 137 aa12.73□□□□□ -0.37
COL7A1-207ENST00000467985 CLRN3Q8NCR9 226 aa12.73□□□□□ -0.37
COL7A1-207ENST00000467985 COX11Q9Y6N1 276 aa12.73□□□□□ -0.37
COL7A1-207ENST00000467985 MUC21A0A0G2JKD1 596 aa12.72□□□□□ -0.37
COL7A1-207ENST00000467985 MUC21A0A140T8X8 626 aa12.72□□□□□ -0.37
COL7A1-207ENST00000467985 UBE2D3P61077 147 aa12.72□□□□□ -0.37
COL7A1-207ENST00000467985 UBE2D2P62837 147 aa12.72□□□□□ -0.37
COL7A1-207ENST00000467985 RHEBQ15382 184 aa12.72□□□□□ -0.37
COL7A1-207ENST00000467985 LYZL1Q6UWQ5 148 aa12.72□□□□□ -0.37
COL7A1-207ENST00000467985 DAZ4Q86SG3 579 aaKnown RBP12.72□□□□□ -0.37
COL7A1-207ENST00000467985 NIT1Q86X76 327 aa12.72□□□□□ -0.37
COL7A1-207ENST00000467985 Q8N3U1 123 aa12.72□□□□□ -0.37
COL7A1-207ENST00000467985 PGLYRP4Q96LB8 373 aa12.72□□□□□ -0.37
COL7A1-207ENST00000467985 CHCHD7Q9BUK0 85 aa12.72□□□□□ -0.37
COL7A1-207ENST00000467985 GFRA4Q9GZZ7 299 aa12.72□□□□□ -0.37
COL7A1-207ENST00000467985 RPS10P5Q9NQ39 176 aa12.72□□□□□ -0.37
COL7A1-207ENST00000467985 DAZ3Q9NR90 486 aaKnown RBP12.72□□□□□ -0.37
COL7A1-207ENST00000467985 HIGD1CA8MV81 97 aa12.71□□□□□ -0.37
COL7A1-207ENST00000467985 IGLC6P0CF74 106 aa12.71□□□□□ -0.37
COL7A1-207ENST00000467985 XGP55808 180 aa12.71□□□□□ -0.37
COL7A1-207ENST00000467985 CACNG7P62955 275 aa12.71□□□□□ -0.37
COL7A1-207ENST00000467985 ZNF56Q15929 161 aa12.71□□□□□ -0.37
COL7A1-207ENST00000467985 KCNIP4Q6PIL6 250 aa12.71□□□□□ -0.37
COL7A1-207ENST00000467985 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.71□□□□□ -0.37
COL7A1-207ENST00000467985 RMI2Q96E14 147 aa12.71□□□□□ -0.37
COL7A1-207ENST00000467985 CTDSP1Q9GZU7 261 aa12.71□□□□□ -0.37
COL7A1-207ENST00000467985 A0A087WX48 190 aa12.7□□□□□ -0.38
COL7A1-207ENST00000467985 FAM231BA6NCW3 169 aa12.7□□□□□ -0.38
COL7A1-207ENST00000467985 ELOBQ15370 118 aa12.7□□□□□ -0.38
COL7A1-207ENST00000467985 GTSF1Q8WW33 167 aa12.7□□□□□ -0.38
COL7A1-207ENST00000467985 NAT8BQ9UHF3 227 aa12.7□□□□□ -0.38
COL7A1-207ENST00000467985 SRRM2Q9UQ35 2752 aaKnown RBP12.69□□□□□ -0.38
COL7A1-207ENST00000467985 C7orf77A4D0Y5 90 aa12.69□□□□□ -0.38
COL7A1-207ENST00000467985 SMIM17P0DL12 118 aa12.69□□□□□ -0.38
COL7A1-207ENST00000467985 CTRLP40313 264 aa12.69□□□□□ -0.38
COL7A1-207ENST00000467985 EPM2AB3EWF7 344 aa12.68□□□□□ -0.38
COL7A1-207ENST00000467985 AP1S3Q96PC3 154 aa12.68□□□□□ -0.38
COL7A1-207ENST00000467985 TMEM70Q9BUB7 260 aa12.68□□□□□ -0.38
COL7A1-207ENST00000467985 SMIM27A0A1W2PRY6 76 aa12.67□□□□□ -0.38
COL7A1-207ENST00000467985 F5H697 171 aa12.67□□□□□ -0.38
COL7A1-207ENST00000467985 S100PP25815 95 aa12.67□□□□□ -0.38
COL7A1-207ENST00000467985 TWIST1Q15672 202 aa12.67□□□□□ -0.38
COL7A1-207ENST00000467985 NEXN-AS1Q8NBZ9 246 aa12.67□□□□□ -0.38
COL7A1-207ENST00000467985 TRBV6-8A0A0A6YYG3 113 aa12.66□□□□□ -0.38
COL7A1-207ENST00000467985 A0A1B0GUT8 65 aa12.66□□□□□ -0.38
COL7A1-207ENST00000467985 TRGC1P0CF51 173 aa12.66□□□□□ -0.38
COL7A1-207ENST00000467985 SMIM15Q7Z3B0 74 aa12.66□□□□□ -0.38
COL7A1-207ENST00000467985 NUP35Q8NFH5 326 aa12.66□□□□□ -0.38
COL7A1-207ENST00000467985 KLK12Q9UKR0 248 aa12.66□□□□□ -0.38
COL7A1-207ENST00000467985 NTF3P20783 257 aa12.65□□□□□ -0.38
COL7A1-207ENST00000467985 FOXA3P55318 350 aaPredicted RBP12.65□□□□□ -0.38
COL7A1-207ENST00000467985 PKIAP61925 76 aa12.65□□□□□ -0.38
COL7A1-207ENST00000467985 RIGQ13278 110 aa12.65□□□□□ -0.38
COL7A1-207ENST00000467985 TMEM97Q5BJF2 176 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms