RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 F8P00451 2351 aa13.34□□□□□ -0.27
COL9A3-205ENST00000466192 TRPT1Q86TN4 253 aaKnown RBP13.34□□□□□ -0.27
COL9A3-205ENST00000466192 VWFP04275 2813 aa13.34□□□□□ -0.27
COL9A3-205ENST00000466192 CRYGDP07320 174 aa13.34□□□□□ -0.27
COL9A3-205ENST00000466192 ZNF56Q15929 161 aa13.34□□□□□ -0.27
COL9A3-205ENST00000466192 AMMECR1LQ6DCA0 310 aa13.34□□□□□ -0.27
COL9A3-205ENST00000466192 DEFB104AQ8WTQ1 72 aa13.33□□□□□ -0.28
COL9A3-205ENST00000466192 K7ERU9 68 aa13.32□□□□□ -0.28
COL9A3-205ENST00000466192 INSP01308 110 aa13.32□□□□□ -0.28
COL9A3-205ENST00000466192 XCL2Q9UBD3 114 aa13.32□□□□□ -0.28
COL9A3-205ENST00000466192 K7EMI3 77 aa13.32□□□□□ -0.28
COL9A3-205ENST00000466192 PF4P02776 101 aa13.32□□□□□ -0.28
COL9A3-205ENST00000466192 COX8AP10176 69 aa13.32□□□□□ -0.28
COL9A3-205ENST00000466192 LINC00482Q8N8I6 264 aa13.32□□□□□ -0.28
COL9A3-205ENST00000466192 LINC01587Q99440 93 aa13.32□□□□□ -0.28
COL9A3-205ENST00000466192 NACAE9PAV3 2078 aa13.31□□□□□ -0.28
COL9A3-205ENST00000466192 GAGE12BA1L429 117 aa13.31□□□□□ -0.28
COL9A3-205ENST00000466192 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.31□□□□□ -0.28
COL9A3-205ENST00000466192 BEAN1Q3B7T3 259 aa13.31□□□□□ -0.28
COL9A3-205ENST00000466192 TOMM6Q96B49 74 aa13.31□□□□□ -0.28
COL9A3-205ENST00000466192 WFDC10AQ9H1F0 79 aa13.31□□□□□ -0.28
COL9A3-205ENST00000466192 ZMAT4Q9H898 229 aa13.31□□□□□ -0.28
COL9A3-205ENST00000466192 POLR2KP53803 58 aaKnown RBP13.3□□□□□ -0.28
COL9A3-205ENST00000466192 C2orf66Q6UXQ4 117 aa13.3□□□□□ -0.28
COL9A3-205ENST00000466192 SCGB3A1Q96QR1 104 aa13.3□□□□□ -0.28
COL9A3-205ENST00000466192 LINC00467Q9BRT7 94 aa13.3□□□□□ -0.28
COL9A3-205ENST00000466192 C19orf73Q9NVV2 129 aa13.3□□□□□ -0.28
COL9A3-205ENST00000466192 SDHAF1A6NFY7 115 aa13.3□□□□□ -0.28
COL9A3-205ENST00000466192 M0QY20 66 aa13.3□□□□□ -0.28
COL9A3-205ENST00000466192 CMC4P56277 68 aaPredicted RBP13.3□□□□□ -0.28
COL9A3-205ENST00000466192 NOTCH3Q9UM47 2321 aa13.29□□□□□ -0.28
COL9A3-205ENST00000466192 IGKCP01834 107 aa13.29□□□□□ -0.28
COL9A3-205ENST00000466192 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.29□□□□□ -0.28
COL9A3-205ENST00000466192 ATRQ13535 2644 aa13.29□□□□□ -0.28
COL9A3-205ENST00000466192 TEP1Q99973 2627 aaKnown RBP13.29□□□□□ -0.28
COL9A3-205ENST00000466192 C11orf72Q8NBR9 251 aa13.28□□□□□ -0.28
COL9A3-205ENST00000466192 FAM110AQ9BQ89 295 aa13.28□□□□□ -0.28
COL9A3-205ENST00000466192 MRPL35Q9NZE8 188 aaKnown RBP13.28□□□□□ -0.28
COL9A3-205ENST00000466192 HHLA3Q9XRX5 114 aa13.28□□□□□ -0.28
COL9A3-205ENST00000466192 VCYO14598 125 aa13.28□□□□□ -0.28
COL9A3-205ENST00000466192 RPL32P62910 135 aaKnown RBP13.28□□□□□ -0.28
COL9A3-205ENST00000466192 ZNF415Q09FC8 603 aa13.28□□□□□ -0.28
COL9A3-205ENST00000466192 MORN3Q6PF18 240 aaPredicted RBP13.28□□□□□ -0.28
COL9A3-205ENST00000466192 C1orf158Q8N1D5 194 aa13.28□□□□□ -0.28
COL9A3-205ENST00000466192 TRAV8-6A0A0B4J262 113 aa13.27□□□□□ -0.28
COL9A3-205ENST00000466192 DPM2O94777 84 aa13.27□□□□□ -0.28
COL9A3-205ENST00000466192 NMUP48645 174 aa13.27□□□□□ -0.28
COL9A3-205ENST00000466192 KIR2DL4Q99706 377 aa13.27□□□□□ -0.28
COL9A3-205ENST00000466192 A0A087WX48 190 aa13.27□□□□□ -0.29
COL9A3-205ENST00000466192 IGHV3-73A0A0B4J1V6 119 aa13.27□□□□□ -0.29
COL9A3-205ENST00000466192 TRBV6-5A0A0K0K1A5 114 aa13.26□□□□□ -0.29
COL9A3-205ENST00000466192 M0R2P5 195 aa13.26□□□□□ -0.29
COL9A3-205ENST00000466192 FGF6P10767 208 aa13.26□□□□□ -0.29
COL9A3-205ENST00000466192 ZFP2Q6ZN57 461 aa13.26□□□□□ -0.29
COL9A3-205ENST00000466192 SPATA3Q8NHX4 192 aa13.26□□□□□ -0.29
COL9A3-205ENST00000466192 TRBV27A0A0K0K1C4 114 aa13.25□□□□□ -0.29
COL9A3-205ENST00000466192 AZU1P20160 251 aa13.25□□□□□ -0.29
COL9A3-205ENST00000466192 IGHV3OR16-12A0A075B7B8 117 aa13.25□□□□□ -0.29
COL9A3-205ENST00000466192 GIG44P09565 113 aaPredicted RBP13.25□□□□□ -0.29
COL9A3-205ENST00000466192 SEC11AP67812 179 aa13.25□□□□□ -0.29
COL9A3-205ENST00000466192 C2orf91Q6ZV80 131 aa13.25□□□□□ -0.29
COL9A3-205ENST00000466192 ZC2HC1BQ5TFG8 222 aa13.24□□□□□ -0.29
COL9A3-205ENST00000466192 PCP2Q8IVA1 136 aa13.24□□□□□ -0.29
COL9A3-205ENST00000466192 CYSLTR1Q9Y271 337 aa13.24□□□□□ -0.29
COL9A3-205ENST00000466192 TMEM238C9JI98 176 aa13.24□□□□□ -0.29
COL9A3-205ENST00000466192 GTSCR1Q86UQ5 136 aa13.24□□□□□ -0.29
COL9A3-205ENST00000466192 BOD1L2Q8IYS8 172 aa13.24□□□□□ -0.29
COL9A3-205ENST00000466192 TP53TG1Q9Y2A0 90 aa13.24□□□□□ -0.29
COL9A3-205ENST00000466192 IGKV2D-26A0A0A0MRZ7 120 aa13.23□□□□□ -0.29
COL9A3-205ENST00000466192 TRAV12-1A0A0B4J245 112 aa13.23□□□□□ -0.29
COL9A3-205ENST00000466192 RPL39P62891 51 aaKnown RBP13.23□□□□□ -0.29
COL9A3-205ENST00000466192 NEXN-AS1Q8NBZ9 246 aa13.23□□□□□ -0.29
COL9A3-205ENST00000466192 PTH2Q96A98 100 aa13.23□□□□□ -0.29
COL9A3-205ENST00000466192 CITED1Q99966 193 aa13.23□□□□□ -0.29
COL9A3-205ENST00000466192 RPL35AP18077 110 aaKnown RBP13.22□□□□□ -0.29
COL9A3-205ENST00000466192 PIK3CD-AS1Q5SR53 167 aa13.22□□□□□ -0.29
COL9A3-205ENST00000466192 UFSP1Q6NVU6 142 aa13.22□□□□□ -0.29
COL9A3-205ENST00000466192 BAALCQ8WXS3 180 aa13.22□□□□□ -0.29
COL9A3-205ENST00000466192 H7C1H1 209 aa13.22□□□□□ -0.29
COL9A3-205ENST00000466192 GAGE10A6NGK3 116 aa13.21□□□□□ -0.29
COL9A3-205ENST00000466192 A8MWV9 139 aa13.21□□□□□ -0.29
COL9A3-205ENST00000466192 F8VRH5 84 aa13.21□□□□□ -0.29
COL9A3-205ENST00000466192 P0DMU3 169 aa13.21□□□□□ -0.29
COL9A3-205ENST00000466192 FAM231AP0DMU4 169 aa13.21□□□□□ -0.29
COL9A3-205ENST00000466192 FAM231CP0DMU5 169 aa13.21□□□□□ -0.29
COL9A3-205ENST00000466192 SPXQ9BT56 116 aa13.21□□□□□ -0.29
COL9A3-205ENST00000466192 MRPL16Q9NX20 251 aaKnown RBP13.21□□□□□ -0.29
COL9A3-205ENST00000466192 CHTOPQ9Y3Y2 248 aaKnown RBP13.21□□□□□ -0.29
COL9A3-205ENST00000466192 PLNP26678 52 aa13.21□□□□□ -0.3
COL9A3-205ENST00000466192 GTF2H5Q6ZYL4 71 aa13.2□□□□□ -0.3
COL9A3-205ENST00000466192 TTTY13Q9BZ97 58 aa13.2□□□□□ -0.3
COL9A3-205ENST00000466192 TRRAPQ9Y4A5 3859 aa13.2□□□□□ -0.3
COL9A3-205ENST00000466192 TMEM97Q5BJF2 176 aa13.2□□□□□ -0.3
COL9A3-205ENST00000466192 CFAP126Q5VTH2 177 aa13.2□□□□□ -0.3
COL9A3-205ENST00000466192 PRSS29PA6NIE9 313 aa13.19□□□□□ -0.3
COL9A3-205ENST00000466192 IGIPA6NJ69 53 aa13.19□□□□□ -0.3
COL9A3-205ENST00000466192 TSHBP01222 138 aa13.19□□□□□ -0.3
COL9A3-205ENST00000466192 IL17DQ8TAD2 202 aa13.19□□□□□ -0.3
COL9A3-205ENST00000466192 G3V4G9 280 aa13.18□□□□□ -0.3
COL9A3-205ENST00000466192 RIPPLY3P57055 190 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms