RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 TRAV9-2A0A087WT02 112 aa13.59□□□□□ -0.23
COL9A3-204ENST00000463487 NBDYA0A0U1RRE5 68 aa13.59□□□□□ -0.23
COL9A3-204ENST00000463487 M0R2N4 97 aa13.59□□□□□ -0.23
COL9A3-204ENST00000463487 UBE2D3P61077 147 aa13.59□□□□□ -0.23
COL9A3-204ENST00000463487 UBE2D2P62837 147 aa13.59□□□□□ -0.23
COL9A3-204ENST00000463487 K7EP13 123 aa13.58□□□□□ -0.24
COL9A3-204ENST00000463487 NDUFA5Q16718 116 aa13.58□□□□□ -0.24
COL9A3-204ENST00000463487 TMEM97Q5BJF2 176 aa13.58□□□□□ -0.24
COL9A3-204ENST00000463487 DAZ4Q86SG3 579 aaKnown RBP13.58□□□□□ -0.24
COL9A3-204ENST00000463487 NIT2Q9NQR4 276 aa13.58□□□□□ -0.24
COL9A3-204ENST00000463487 DAZ3Q9NR90 486 aaKnown RBP13.58□□□□□ -0.24
COL9A3-204ENST00000463487 Q9UF83 564 aa13.58□□□□□ -0.24
COL9A3-204ENST00000463487 DNAH1Q9P2D7 4330 aa13.57□□□□□ -0.24
COL9A3-204ENST00000463487 CTDSP1Q9GZU7 261 aa13.57□□□□□ -0.24
COL9A3-204ENST00000463487 HBBP68871 147 aa13.56□□□□□ -0.24
COL9A3-204ENST00000463487 ATP5L2Q7Z4Y8 100 aa13.56□□□□□ -0.24
COL9A3-204ENST00000463487 CARHSP1Q9Y2V2 147 aaKnown RBP13.56□□□□□ -0.24
COL9A3-204ENST00000463487 IGHV3-38A0A0C4DH36 116 aa13.55□□□□□ -0.24
COL9A3-204ENST00000463487 CAMPP49913 170 aa13.55□□□□□ -0.24
COL9A3-204ENST00000463487 C10orf91Q5T1B1 145 aa13.55□□□□□ -0.24
COL9A3-204ENST00000463487 KCNIP4Q6PIL6 250 aa13.55□□□□□ -0.24
COL9A3-204ENST00000463487 Q6ZR54 194 aa13.55□□□□□ -0.24
COL9A3-204ENST00000463487 WFDC10BQ8IUB3 73 aa13.55□□□□□ -0.24
COL9A3-204ENST00000463487 MRPL54Q6P161 138 aaKnown RBP13.54□□□□□ -0.24
COL9A3-204ENST00000463487 C10orf126Q8N4M7 172 aa13.54□□□□□ -0.24
COL9A3-204ENST00000463487 GATD1Q8NB37 220 aa13.54□□□□□ -0.24
COL9A3-204ENST00000463487 MRAP2Q96G30 205 aa13.54□□□□□ -0.24
COL9A3-204ENST00000463487 IMMP2LQ96T52 175 aa13.54□□□□□ -0.24
COL9A3-204ENST00000463487 SACSQ9NZJ4 4579 aa13.54□□□□□ -0.24
COL9A3-204ENST00000463487 TRAV26-2A0A0B4J265 109 aa13.53□□□□□ -0.24
COL9A3-204ENST00000463487 DNAH10OSP0CZ25 163 aa13.53□□□□□ -0.24
COL9A3-204ENST00000463487 BTF3P20290 206 aaKnown RBP13.53□□□□□ -0.24
COL9A3-204ENST00000463487 RHEBQ15382 184 aa13.53□□□□□ -0.24
COL9A3-204ENST00000463487 C1orf134Q5TEV5 83 aa13.53□□□□□ -0.24
COL9A3-204ENST00000463487 BTF3L4Q96K17 158 aa13.53□□□□□ -0.24
COL9A3-204ENST00000463487 URGCP-MRPS24S4R325 110 aa13.53□□□□□ -0.24
COL9A3-204ENST00000463487 RYR2Q92736 4967 aa13.53□□□□□ -0.24
COL9A3-204ENST00000463487 PPP1R17O96001 155 aa13.52□□□□□ -0.25
COL9A3-204ENST00000463487 S100PP25815 95 aa13.52□□□□□ -0.25
COL9A3-204ENST00000463487 LINC01556Q5JQF7 62 aa13.52□□□□□ -0.25
COL9A3-204ENST00000463487 AMN1Q8IY45 258 aa13.52□□□□□ -0.25
COL9A3-204ENST00000463487 TRBV6-8A0A0A6YYG3 113 aa13.51□□□□□ -0.25
COL9A3-204ENST00000463487 RAB4AP20338 218 aa13.51□□□□□ -0.25
COL9A3-204ENST00000463487 PKIAP61925 76 aa13.51□□□□□ -0.25
COL9A3-204ENST00000463487 KMT2AQ03164 3969 aa13.5□□□□□ -0.25
COL9A3-204ENST00000463487 A0A1B0GXF2 115 aa13.5□□□□□ -0.25
COL9A3-204ENST00000463487 FAM104BQ5XKR9 115 aa13.5□□□□□ -0.25
COL9A3-204ENST00000463487 SVBPQ8N300 66 aa13.5□□□□□ -0.25
COL9A3-204ENST00000463487 C6orf223Q8N319 242 aa13.5□□□□□ -0.25
COL9A3-204ENST00000463487 TMEM242Q9NWH2 141 aa13.5□□□□□ -0.25
COL9A3-204ENST00000463487 HYDINQ4G0P3 5121 aa13.5□□□□□ -0.25
COL9A3-204ENST00000463487 VPS13DQ5THJ4 4388 aa13.49□□□□□ -0.25
COL9A3-204ENST00000463487 TRBV25-1A0A075B6N4 114 aa13.49□□□□□ -0.25
COL9A3-204ENST00000463487 TRAV9-1A0A075B6T8 112 aa13.49□□□□□ -0.25
COL9A3-204ENST00000463487 CLRN3Q8NCR9 226 aa13.49□□□□□ -0.25
COL9A3-204ENST00000463487 RNF185Q96GF1 192 aa13.49□□□□□ -0.25
COL9A3-204ENST00000463487 C7orf77A4D0Y5 90 aa13.48□□□□□ -0.25
COL9A3-204ENST00000463487 APOC3P02656 99 aa13.48□□□□□ -0.25
COL9A3-204ENST00000463487 COTL1Q14019 142 aa13.48□□□□□ -0.25
COL9A3-204ENST00000463487 LINC00336Q6ZUF6 198 aa13.48□□□□□ -0.25
COL9A3-204ENST00000463487 ST20Q9HBF5 79 aa13.48□□□□□ -0.25
COL9A3-204ENST00000463487 RPS10P5Q9NQ39 176 aa13.48□□□□□ -0.25
COL9A3-204ENST00000463487 A0A087WX48 190 aa13.47□□□□□ -0.25
COL9A3-204ENST00000463487 IGHV1-24A0A0C4DH33 117 aa13.47□□□□□ -0.25
COL9A3-204ENST00000463487 TRBV6-5A0A0K0K1A5 114 aa13.47□□□□□ -0.25
COL9A3-204ENST00000463487 SNAPINO95295 136 aa13.47□□□□□ -0.25
COL9A3-204ENST00000463487 RPL39LQ96EH5 51 aaKnown RBP13.47□□□□□ -0.25
COL9A3-204ENST00000463487 CHCHD5Q9BSY4 110 aa13.47□□□□□ -0.25
COL9A3-204ENST00000463487 CHCHD7Q9BUK0 85 aa13.47□□□□□ -0.25
COL9A3-204ENST00000463487 NFE4Q86UQ8 179 aa13.46□□□□□ -0.25
COL9A3-204ENST00000463487 DNAH6Q9C0G6 4158 aa13.46□□□□□ -0.25
COL9A3-204ENST00000463487 RYR3Q15413 4870 aa13.45□□□□□ -0.26
COL9A3-204ENST00000463487 SDHAF1A6NFY7 115 aa13.45□□□□□ -0.26
COL9A3-204ENST00000463487 IGHV3-30P01768 117 aa13.45□□□□□ -0.26
COL9A3-204ENST00000463487 IGHV3-33P01772 117 aa13.45□□□□□ -0.26
COL9A3-204ENST00000463487 PPBPP02775 128 aa13.45□□□□□ -0.26
COL9A3-204ENST00000463487 IGHV3-30-3P0DP02 117 aa13.45□□□□□ -0.26
COL9A3-204ENST00000463487 IGHV3-30-5P0DP03 117 aa13.45□□□□□ -0.26
COL9A3-204ENST00000463487 CKS2P33552 79 aa13.45□□□□□ -0.26
COL9A3-204ENST00000463487 ELOBQ15370 118 aa13.45□□□□□ -0.26
COL9A3-204ENST00000463487 MRPL51Q4U2R6 128 aaKnown RBP13.45□□□□□ -0.26
COL9A3-204ENST00000463487 NIT1Q86X76 327 aa13.45□□□□□ -0.26
COL9A3-204ENST00000463487 KRTAP1-5Q9BYS1 174 aa13.45□□□□□ -0.26
COL9A3-204ENST00000463487 TMEM262E9PQX1 116 aa13.44□□□□□ -0.26
COL9A3-204ENST00000463487 NCR2O95944 276 aa13.44□□□□□ -0.26
COL9A3-204ENST00000463487 PMCHP20382 165 aa13.44□□□□□ -0.26
COL9A3-204ENST00000463487 IQCJQ1A5X6 159 aa13.44□□□□□ -0.26
COL9A3-204ENST00000463487 I3L3M4 83 aa13.43□□□□□ -0.26
COL9A3-204ENST00000463487 AMTP48728 403 aa13.43□□□□□ -0.26
COL9A3-204ENST00000463487 TMEM243Q9BU79 118 aa13.43□□□□□ -0.26
COL9A3-204ENST00000463487 UBE2L6O14933 153 aa13.42□□□□□ -0.26
COL9A3-204ENST00000463487 LAGE3Q14657 143 aa13.42□□□□□ -0.26
COL9A3-204ENST00000463487 NTM-AS1Q6ZSK4 140 aa13.42□□□□□ -0.26
COL9A3-204ENST00000463487 IBA57-AS1B1ANH7 110 aa13.41□□□□□ -0.26
COL9A3-204ENST00000463487 SMKR1H3BMG3 65 aa13.41□□□□□ -0.26
COL9A3-204ENST00000463487 ORMDL3Q8N138 153 aa13.41□□□□□ -0.26
COL9A3-204ENST00000463487 TMEM70Q9BUB7 260 aa13.41□□□□□ -0.26
COL9A3-204ENST00000463487 APCSP02743 223 aa13.4□□□□□ -0.26
COL9A3-204ENST00000463487 RPS10P46783 165 aaKnown RBP13.4□□□□□ -0.26
COL9A3-204ENST00000463487 SUMO2P61956 95 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms