RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 BAGE3Q86Y29 109 aa7.78□□□□□ -1.16
SCN9A-205ENST00000454569 TRAV26-2A0A0B4J265 109 aa7.77□□□□□ -1.17
SCN9A-205ENST00000454569 S100A2P29034 98 aa7.77□□□□□ -1.17
SCN9A-205ENST00000454569 LGALS9BQ3B8N2 356 aa7.77□□□□□ -1.17
SCN9A-205ENST00000454569 MAJINQ3KP22 176 aa7.77□□□□□ -1.17
SCN9A-205ENST00000454569 HIST3H2BBQ8N257 126 aa7.77□□□□□ -1.17
SCN9A-205ENST00000454569 SYT8Q8NBV8 401 aa7.77□□□□□ -1.17
SCN9A-205ENST00000454569 C18orf32Q8TCD1 76 aa7.77□□□□□ -1.17
SCN9A-205ENST00000454569 C12orf57Q99622 126 aa7.77□□□□□ -1.17
SCN9A-205ENST00000454569 C12orf74Q32Q52 190 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 MRPL51Q4U2R6 128 aaKnown RBP7.76□□□□□ -1.17
SCN9A-205ENST00000454569 AP1S3Q96PC3 154 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 LYRM9A8MSI8 78 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 D6R8Y8 96 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 SERF1AO75920 110 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 NCR2O95944 276 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 MGPP08493 103 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 P0DMU3 169 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 FAM231AP0DMU4 169 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 FAM231CP0DMU5 169 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 AKR1D1P51857 326 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 IQCJQ1A5X6 159 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 ORMDL3Q8N138 153 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 C11orf68Q9H3H3 251 aaKnown RBP7.76□□□□□ -1.17
SCN9A-205ENST00000454569 DPH3P1Q9H4G8 78 aa7.76□□□□□ -1.17
SCN9A-205ENST00000454569 TRGV2A0A075B6R0 118 aa7.75□□□□□ -1.17
SCN9A-205ENST00000454569 A8MWV9 139 aa7.75□□□□□ -1.17
SCN9A-205ENST00000454569 CKS2P33552 79 aa7.75□□□□□ -1.17
SCN9A-205ENST00000454569 NANOS2P60321 138 aaKnown RBP7.75□□□□□ -1.17
SCN9A-205ENST00000454569 FHL2Q14192 279 aa7.75□□□□□ -1.17
SCN9A-205ENST00000454569 PIK3CD-AS1Q5SR53 167 aa7.75□□□□□ -1.17
SCN9A-205ENST00000454569 OR4C5Q8NGB2 326 aa7.75□□□□□ -1.17
SCN9A-205ENST00000454569 DNAH7Q8WXX0 4024 aa7.74□□□□□ -1.17
SCN9A-205ENST00000454569 TRAV4A0A0B4J268 109 aa7.74□□□□□ -1.17
SCN9A-205ENST00000454569 LINC00587B1AMM8 73 aa7.74□□□□□ -1.17
SCN9A-205ENST00000454569 PPBPP02775 128 aa7.74□□□□□ -1.17
SCN9A-205ENST00000454569 SPART-AS1P0CW21 52 aa7.74□□□□□ -1.17
SCN9A-205ENST00000454569 SUMO4Q6EEV6 95 aa7.74□□□□□ -1.17
SCN9A-205ENST00000454569 PRELID3AQ96N28 172 aa7.74□□□□□ -1.17
SCN9A-205ENST00000454569 U3KQK5 164 aa7.74□□□□□ -1.17
SCN9A-205ENST00000454569 CSMD3Q7Z407 3707 aa7.73□□□□□ -1.17
SCN9A-205ENST00000454569 IFITM10A6NMD0 228 aa7.73□□□□□ -1.17
SCN9A-205ENST00000454569 SMIM17P0DL12 118 aa7.73□□□□□ -1.17
SCN9A-205ENST00000454569 FABP4P15090 132 aa7.73□□□□□ -1.17
SCN9A-205ENST00000454569 LINC00310P59036 64 aa7.73□□□□□ -1.17
SCN9A-205ENST00000454569 DAD1P61803 113 aa7.73□□□□□ -1.17
SCN9A-205ENST00000454569 RNASEKQ6P5S7 137 aaKnown RBP7.73□□□□□ -1.17
SCN9A-205ENST00000454569 Q6ZTC4 211 aa7.73□□□□□ -1.17
SCN9A-205ENST00000454569 TMEM18Q96B42 140 aa7.73□□□□□ -1.17
SCN9A-205ENST00000454569 RPL39LQ96EH5 51 aaKnown RBP7.73□□□□□ -1.17
SCN9A-205ENST00000454569 LOC100131303A0A0U1RQF7 123 aa7.72□□□□□ -1.17
SCN9A-205ENST00000454569 F5H697 171 aa7.72□□□□□ -1.17
SCN9A-205ENST00000454569 NUPR1O60356 82 aa7.72□□□□□ -1.17
SCN9A-205ENST00000454569 CIDEAO60543 219 aa7.72□□□□□ -1.17
SCN9A-205ENST00000454569 ESDP10768 282 aa7.72□□□□□ -1.17
SCN9A-205ENST00000454569 ZNF56Q15929 161 aa7.72□□□□□ -1.17
SCN9A-205ENST00000454569 C18orf15Q96N68 181 aa7.72□□□□□ -1.17
SCN9A-205ENST00000454569 HIST1H2BLQ99880 126 aa7.72□□□□□ -1.17
SCN9A-205ENST00000454569 LAMTOR2Q9Y2Q5 125 aa7.72□□□□□ -1.17
SCN9A-205ENST00000454569 M0QY20 66 aa7.71□□□□□ -1.17
SCN9A-205ENST00000454569 NPYP01303 97 aa7.71□□□□□ -1.17
SCN9A-205ENST00000454569 HTN3P15516 51 aa7.71□□□□□ -1.17
SCN9A-205ENST00000454569 NRACQ8N912 160 aa7.71□□□□□ -1.17
SCN9A-205ENST00000454569 DEFB104AQ8WTQ1 72 aa7.71□□□□□ -1.17
SCN9A-205ENST00000454569 MRAP2Q96G30 205 aa7.71□□□□□ -1.17
SCN9A-205ENST00000454569 NDUFAF3Q9BU61 184 aa7.71□□□□□ -1.17
SCN9A-205ENST00000454569 EDA2RQ9HAV5 297 aa7.71□□□□□ -1.17
SCN9A-205ENST00000454569 HSBP1L1C9JCN9 74 aa7.71□□□□□ -1.18
SCN9A-205ENST00000454569 HSBP1O75506 76 aa7.71□□□□□ -1.18
SCN9A-205ENST00000454569 NHLRC4P0CG21 123 aaPredicted RBP7.71□□□□□ -1.18
SCN9A-205ENST00000454569 ZFP2Q6ZN57 461 aa7.71□□□□□ -1.18
SCN9A-205ENST00000454569 NIT1Q86X76 327 aa7.71□□□□□ -1.18
SCN9A-205ENST00000454569 SLC25A29Q8N8R3 303 aa7.71□□□□□ -1.18
SCN9A-205ENST00000454569 C11orf45Q8TAV5 145 aa7.71□□□□□ -1.18
SCN9A-205ENST00000454569 PACRGQ96M98 296 aaPredicted RBP7.71□□□□□ -1.18
SCN9A-205ENST00000454569 MAP1LC3AQ9H492 121 aa7.71□□□□□ -1.18
SCN9A-205ENST00000454569 STARD9Q9P2P6 4700 aa7.7□□□□□ -1.18
SCN9A-205ENST00000454569 TNFRSF6BO95407 300 aa7.7□□□□□ -1.18
SCN9A-205ENST00000454569 SMIM6P0DI80 62 aa7.7□□□□□ -1.18
SCN9A-205ENST00000454569 PMCHP20382 165 aa7.7□□□□□ -1.18
SCN9A-205ENST00000454569 AMTP48728 403 aa7.7□□□□□ -1.18
SCN9A-205ENST00000454569 OR10D4PQ8NGN7 298 aa7.7□□□□□ -1.18
SCN9A-205ENST00000454569 PRSS3P2Q8NHM4 247 aa7.7□□□□□ -1.18
SCN9A-205ENST00000454569 CHCHD1Q96BP2 118 aaKnown RBP7.7□□□□□ -1.18
SCN9A-205ENST00000454569 VSIG2Q96IQ7 327 aa7.7□□□□□ -1.18
SCN9A-205ENST00000454569 DYNC2H1Q8NCM8 4307 aaKnown RBP7.69□□□□□ -1.18
SCN9A-205ENST00000454569 TRGV4A0A0C4DH28 118 aa7.69□□□□□ -1.18
SCN9A-205ENST00000454569 A0A0J9YY99 117 aa7.69□□□□□ -1.18
SCN9A-205ENST00000454569 LOC389332A0A1B0GUA5 103 aa7.69□□□□□ -1.18
SCN9A-205ENST00000454569 ATP5G1P05496 136 aa7.69□□□□□ -1.18
SCN9A-205ENST00000454569 LINC00614P0C842 121 aa7.69□□□□□ -1.18
SCN9A-205ENST00000454569 FA2HQ7L5A8 372 aa7.69□□□□□ -1.18
SCN9A-205ENST00000454569 NEXN-AS1Q8NBZ9 246 aa7.69□□□□□ -1.18
SCN9A-205ENST00000454569 URB1-AS1Q96HZ7 61 aa7.69□□□□□ -1.18
SCN9A-205ENST00000454569 F5H768 121 aa7.68□□□□□ -1.18
SCN9A-205ENST00000454569 RHODO00212 210 aa7.68□□□□□ -1.18
SCN9A-205ENST00000454569 IFI27P40305 119 aaPredicted RBP7.68□□□□□ -1.18
SCN9A-205ENST00000454569 CRYBA4P53673 196 aa7.68□□□□□ -1.18
SCN9A-205ENST00000454569 NEGR1Q7Z3B1 354 aa7.68□□□□□ -1.18
SCN9A-205ENST00000454569 HHLA3Q9XRX5 114 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 138.3 ms