RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 GAGE13Q4V321 117 aa11.76□□□□□ -0.53
COL7A1-202ENST00000422991 NEGR1Q7Z3B1 354 aa11.76□□□□□ -0.53
COL7A1-202ENST00000422991 SH2D6Q7Z4S9 175 aa11.76□□□□□ -0.53
COL7A1-202ENST00000422991 AMN1Q8IY45 258 aa11.76□□□□□ -0.53
COL7A1-202ENST00000422991 NEXN-AS1Q8NBZ9 246 aa11.76□□□□□ -0.53
COL7A1-202ENST00000422991 TRAV26-2A0A0B4J265 109 aa11.75□□□□□ -0.53
COL7A1-202ENST00000422991 RAB4AP20338 218 aa11.75□□□□□ -0.53
COL7A1-202ENST00000422991 FAM104BQ5XKR9 115 aa11.75□□□□□ -0.53
COL7A1-202ENST00000422991 RASL11AQ6T310 242 aa11.75□□□□□ -0.53
COL7A1-202ENST00000422991 LINC00476Q8WZB0 136 aa11.75□□□□□ -0.53
COL7A1-202ENST00000422991 FRZBQ92765 325 aa11.75□□□□□ -0.53
COL7A1-202ENST00000422991 TRBV7-3A0A075B6L6 115 aa11.74□□□□□ -0.53
COL7A1-202ENST00000422991 RPL36AP83881 106 aaKnown RBP11.74□□□□□ -0.53
COL7A1-202ENST00000422991 LGALS9CQ6DKI2 356 aa11.74□□□□□ -0.53
COL7A1-202ENST00000422991 ZNRF2Q8NHG8 242 aa11.74□□□□□ -0.53
COL7A1-202ENST00000422991 RPL36ALQ969Q0 106 aaKnown RBP11.74□□□□□ -0.53
COL7A1-202ENST00000422991 UBE2D3P61077 147 aa11.73□□□□□ -0.53
COL7A1-202ENST00000422991 UBE2D2P62837 147 aa11.73□□□□□ -0.53
COL7A1-202ENST00000422991 ESRGQ1W209 222 aa11.73□□□□□ -0.53
COL7A1-202ENST00000422991 MRAP2Q96G30 205 aa11.73□□□□□ -0.53
COL7A1-202ENST00000422991 CCL18P55774 89 aa11.72□□□□□ -0.53
COL7A1-202ENST00000422991 MRPL51Q4U2R6 128 aaKnown RBP11.72□□□□□ -0.53
COL7A1-202ENST00000422991 ATP6V0E2Q8NHE4 81 aa11.72□□□□□ -0.53
COL7A1-202ENST00000422991 DNAJC30Q96LL9 226 aa11.72□□□□□ -0.53
COL7A1-202ENST00000422991 NIT2Q9NQR4 276 aa11.72□□□□□ -0.53
COL7A1-202ENST00000422991 LINC00588Q9Y4M8 146 aa11.72□□□□□ -0.53
COL7A1-202ENST00000422991 GAS8-AS1O95177 125 aa11.71□□□□□ -0.53
COL7A1-202ENST00000422991 TIRAPP58753 221 aa11.71□□□□□ -0.53
COL7A1-202ENST00000422991 ELOBQ15370 118 aa11.71□□□□□ -0.53
COL7A1-202ENST00000422991 LYPD5Q6UWN5 251 aa11.71□□□□□ -0.53
COL7A1-202ENST00000422991 UBE2DNLQ8IWF7 75 aa11.71□□□□□ -0.53
COL7A1-202ENST00000422991 RPL39LQ96EH5 51 aaKnown RBP11.71□□□□□ -0.53
COL7A1-202ENST00000422991 NCR2O95944 276 aa11.7□□□□□ -0.54
COL7A1-202ENST00000422991 TMEM136Q6ZRR5 245 aa11.7□□□□□ -0.54
COL7A1-202ENST00000422991 YPEL4Q96NS1 127 aa11.7□□□□□ -0.54
COL7A1-202ENST00000422991 GTSF1LQ9H1H1 148 aa11.7□□□□□ -0.54
COL7A1-202ENST00000422991 MRPS16Q9Y3D3 137 aaKnown RBP11.7□□□□□ -0.54
COL7A1-202ENST00000422991 TNFRSF18Q9Y5U5 241 aa11.7□□□□□ -0.54
COL7A1-202ENST00000422991 TGIF2-C20orf24A0A0A6YYL0 155 aa11.69□□□□□ -0.54
COL7A1-202ENST00000422991 SMKR1H3BMG3 65 aa11.69□□□□□ -0.54
COL7A1-202ENST00000422991 LY6G6CO95867 125 aa11.69□□□□□ -0.54
COL7A1-202ENST00000422991 RPS10P46783 165 aaKnown RBP11.69□□□□□ -0.54
COL7A1-202ENST00000422991 OR10J3Q5JRS4 329 aa11.69□□□□□ -0.54
COL7A1-202ENST00000422991 CBLN2Q8IUK8 224 aa11.69□□□□□ -0.54
COL7A1-202ENST00000422991 TRBV24-1A0A075B6N3 115 aa11.68□□□□□ -0.54
COL7A1-202ENST00000422991 NRACQ8N912 160 aa11.68□□□□□ -0.54
COL7A1-202ENST00000422991 UPK3BQ9BT76 320 aa11.68□□□□□ -0.54
COL7A1-202ENST00000422991 SMCO4Q9NRQ5 59 aa11.68□□□□□ -0.54
COL7A1-202ENST00000422991 HYDINQ4G0P3 5121 aa11.68□□□□□ -0.54
COL7A1-202ENST00000422991 TRBV6-5A0A0K0K1A5 114 aa11.67□□□□□ -0.54
COL7A1-202ENST00000422991 COX19Q49B96 90 aa11.67□□□□□ -0.54
COL7A1-202ENST00000422991 DAZ4Q86SG3 579 aaKnown RBP11.67□□□□□ -0.54
COL7A1-202ENST00000422991 GNB1LQ9BYB4 327 aa11.67□□□□□ -0.54
COL7A1-202ENST00000422991 DAZ3Q9NR90 486 aaKnown RBP11.67□□□□□ -0.54
COL7A1-202ENST00000422991 DNAH6Q9C0G6 4158 aa11.67□□□□□ -0.54
COL7A1-202ENST00000422991 IGHV3-38A0A0C4DH36 116 aa11.66□□□□□ -0.54
COL7A1-202ENST00000422991 D6R8Y8 96 aa11.66□□□□□ -0.54
COL7A1-202ENST00000422991 HLA-DQA1P01909 254 aa11.66□□□□□ -0.54
COL7A1-202ENST00000422991 PPBPP02775 128 aa11.66□□□□□ -0.54
COL7A1-202ENST00000422991 CKS2P33552 79 aa11.66□□□□□ -0.54
COL7A1-202ENST00000422991 SDHAF1A6NFY7 115 aa11.65□□□□□ -0.54
COL7A1-202ENST00000422991 ATP6V1G1O75348 118 aa11.65□□□□□ -0.54
COL7A1-202ENST00000422991 PPP1R17O96001 155 aa11.65□□□□□ -0.54
COL7A1-202ENST00000422991 LELP1Q5T871 98 aa11.65□□□□□ -0.54
COL7A1-202ENST00000422991 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.65□□□□□ -0.54
COL7A1-202ENST00000422991 ST20Q9HBF5 79 aa11.65□□□□□ -0.54
COL7A1-202ENST00000422991 MT-ND6P03923 174 aa11.64□□□□□ -0.55
COL7A1-202ENST00000422991 ORMDL3Q8N138 153 aa11.64□□□□□ -0.55
COL7A1-202ENST00000422991 TMEM70Q9BUB7 260 aa11.64□□□□□ -0.55
COL7A1-202ENST00000422991 TNFRSF6BO95407 300 aa11.63□□□□□ -0.55
COL7A1-202ENST00000422991 NPYP01303 97 aa11.63□□□□□ -0.55
COL7A1-202ENST00000422991 TRBV6-8A0A0A6YYG3 113 aa11.62□□□□□ -0.55
COL7A1-202ENST00000422991 PHOX2AO14813 284 aa11.62□□□□□ -0.55
COL7A1-202ENST00000422991 APCSP02743 223 aa11.62□□□□□ -0.55
COL7A1-202ENST00000422991 POLR2KP53803 58 aaKnown RBP11.62□□□□□ -0.55
COL7A1-202ENST00000422991 SUMO2P61956 95 aaKnown RBP11.62□□□□□ -0.55
COL7A1-202ENST00000422991 TMEM97Q5BJF2 176 aa11.62□□□□□ -0.55
COL7A1-202ENST00000422991 NTM-AS1Q6ZSK4 140 aa11.62□□□□□ -0.55
COL7A1-202ENST00000422991 WFDC10BQ8IUB3 73 aa11.62□□□□□ -0.55
COL7A1-202ENST00000422991 PRELID3AQ96N28 172 aa11.62□□□□□ -0.55
COL7A1-202ENST00000422991 TRAV8-6A0A0B4J262 113 aa11.61□□□□□ -0.55
COL7A1-202ENST00000422991 S100A1P23297 94 aa11.61□□□□□ -0.55
COL7A1-202ENST00000422991 C20orf78Q9BR46 151 aa11.61□□□□□ -0.55
COL7A1-202ENST00000422991 MRPL18Q9H0U6 180 aaKnown RBP11.61□□□□□ -0.55
COL7A1-202ENST00000422991 Q9H8V8 135 aa11.61□□□□□ -0.55
COL7A1-202ENST00000422991 LAMTOR2Q9Y2Q5 125 aa11.61□□□□□ -0.55
COL7A1-202ENST00000422991 KMT2AQ03164 3969 aa11.61□□□□□ -0.55
COL7A1-202ENST00000422991 TRBV27A0A0K0K1C4 114 aa11.6□□□□□ -0.55
COL7A1-202ENST00000422991 SIVA1O15304 175 aa11.6□□□□□ -0.55
COL7A1-202ENST00000422991 SCO1O75880 301 aa11.6□□□□□ -0.55
COL7A1-202ENST00000422991 RPL32P62910 135 aaKnown RBP11.6□□□□□ -0.55
COL7A1-202ENST00000422991 COTL1Q14019 142 aa11.6□□□□□ -0.55
COL7A1-202ENST00000422991 I3L3M4 83 aa11.59□□□□□ -0.55
COL7A1-202ENST00000422991 IQCJQ1A5X6 159 aa11.59□□□□□ -0.55
COL7A1-202ENST00000422991 KIAA1644Q3SXP7 199 aa11.59□□□□□ -0.55
COL7A1-202ENST00000422991 DEFB104AQ8WTQ1 72 aa11.59□□□□□ -0.55
COL7A1-202ENST00000422991 TRBV25-1A0A075B6N4 114 aa11.58□□□□□ -0.56
COL7A1-202ENST00000422991 IGHV1-24A0A0C4DH33 117 aa11.58□□□□□ -0.56
COL7A1-202ENST00000422991 DNAH10OSP0CZ25 163 aa11.58□□□□□ -0.56
COL7A1-202ENST00000422991 PMCHP20382 165 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms