RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 TMEM126AQ9H061 195 aa10.83□□□□□ -0.68
RTF1-201ENST00000389629 IGHV3-30-3P0DP02 117 aa10.83□□□□□ -0.68
RTF1-201ENST00000389629 XIRP2A4UGR9 3374 aa10.82□□□□□ -0.68
RTF1-201ENST00000389629 TRBV12-3P01733 135 aa10.81□□□□□ -0.68
RTF1-201ENST00000389629 PEMTQ9UBM1 199 aa10.81□□□□□ -0.68
RTF1-201ENST00000389629 H3BT86 120 aa10.81□□□□□ -0.68
RTF1-201ENST00000389629 S100A7L2Q5SY68 101 aa10.81□□□□□ -0.68
RTF1-201ENST00000389629 CFAP54Q96N23 3096 aa10.81□□□□□ -0.68
RTF1-201ENST00000389629 CACNA1AO00555 2505 aa10.81□□□□□ -0.68
RTF1-201ENST00000389629 IGHV3-33P01772 117 aa10.81□□□□□ -0.68
RTF1-201ENST00000389629 Q8NA96 180 aa10.81□□□□□ -0.68
RTF1-201ENST00000389629 MDFICQ9P1T7 246 aa10.81□□□□□ -0.68
RTF1-201ENST00000389629 MRPS12O15235 138 aaKnown RBP10.8□□□□□ -0.68
RTF1-201ENST00000389629 NFE4Q86UQ8 179 aa10.8□□□□□ -0.68
RTF1-201ENST00000389629 ATRXP46100 2492 aa10.8□□□□□ -0.68
RTF1-201ENST00000389629 ODF3BA8MYP8 253 aa10.8□□□□□ -0.68
RTF1-201ENST00000389629 ACYP1P07311 99 aa10.8□□□□□ -0.68
RTF1-201ENST00000389629 CFHR3Q02985 330 aa10.8□□□□□ -0.68
RTF1-201ENST00000389629 OVOL2Q9BRP0 275 aa10.8□□□□□ -0.68
RTF1-201ENST00000389629 A0A0J9YXY3 114 aa10.8□□□□□ -0.68
RTF1-201ENST00000389629 C5orf56Q8N8D9 126 aa10.8□□□□□ -0.68
RTF1-201ENST00000389629 TRIAP1O43715 76 aa10.8□□□□□ -0.68
RTF1-201ENST00000389629 MALP21145 153 aa10.8□□□□□ -0.68
RTF1-201ENST00000389629 A0A1B0GX51 115 aa10.79□□□□□ -0.68
RTF1-201ENST00000389629 BLCAPP62952 87 aa10.79□□□□□ -0.68
RTF1-201ENST00000389629 NXPH4O95158 308 aa10.79□□□□□ -0.68
RTF1-201ENST00000389629 IGF2-ASQ6U949 168 aa10.79□□□□□ -0.68
RTF1-201ENST00000389629 ZFAND3Q9H8U3 227 aa10.79□□□□□ -0.68
RTF1-201ENST00000389629 AJUBAQ96IF1 538 aa10.79□□□□□ -0.68
RTF1-201ENST00000389629 IGHV3-30P01768 117 aa10.79□□□□□ -0.68
RTF1-201ENST00000389629 IGHV3-30-5P0DP03 117 aa10.79□□□□□ -0.68
RTF1-201ENST00000389629 C20orf203Q8NBC4 194 aa10.78□□□□□ -0.68
RTF1-201ENST00000389629 PRUNE2Q8WUY3 3088 aa10.78□□□□□ -0.68
RTF1-201ENST00000389629 INSP01308 110 aa10.78□□□□□ -0.68
RTF1-201ENST00000389629 TRIOO75962 3097 aa10.78□□□□□ -0.68
RTF1-201ENST00000389629 A0A0B4J2C4 111 aa10.77□□□□□ -0.68
RTF1-201ENST00000389629 MUC6Q6W4X9 2439 aa10.77□□□□□ -0.69
RTF1-201ENST00000389629 HERVK_113P63121 156 aa10.77□□□□□ -0.69
RTF1-201ENST00000389629 MRGPRG-AS1Q2M3A8 158 aa10.77□□□□□ -0.69
RTF1-201ENST00000389629 C20orf173Q96LM9 149 aa10.77□□□□□ -0.69
RTF1-201ENST00000389629 TNFRSF13BO14836 293 aaPredicted RBP10.77□□□□□ -0.69
RTF1-201ENST00000389629 DNAJC30Q96LL9 226 aa10.77□□□□□ -0.69
RTF1-201ENST00000389629 B4DSR2 109 aa10.77□□□□□ -0.69
RTF1-201ENST00000389629 GNLYP22749 145 aa10.77□□□□□ -0.69
RTF1-201ENST00000389629 RPL32P62910 135 aaKnown RBP10.77□□□□□ -0.69
RTF1-201ENST00000389629 HAMPP81172 84 aa10.77□□□□□ -0.69
RTF1-201ENST00000389629 ZMAT4Q9H898 229 aa10.77□□□□□ -0.69
RTF1-201ENST00000389629 GATA3P23771 443 aa10.76□□□□□ -0.69
RTF1-201ENST00000389629 CRIP2P52943 208 aaPredicted RBP10.76□□□□□ -0.69
RTF1-201ENST00000389629 SIRPDQ9H106 197 aa10.76□□□□□ -0.69
RTF1-201ENST00000389629 IGF2RP11717 2491 aa10.76□□□□□ -0.69
RTF1-201ENST00000389629 Q9HAA7 133 aa10.76□□□□□ -0.69
RTF1-201ENST00000389629 CEP295Q9C0D2 2601 aa10.76□□□□□ -0.69
RTF1-201ENST00000389629 TRAV13-2A0A0B4J235 113 aa10.76□□□□□ -0.69
RTF1-201ENST00000389629 J3KT08 172 aa10.76□□□□□ -0.69
RTF1-201ENST00000389629 P0DMU3 169 aa10.76□□□□□ -0.69
RTF1-201ENST00000389629 FAM231AP0DMU4 169 aa10.76□□□□□ -0.69
RTF1-201ENST00000389629 FAM231CP0DMU5 169 aa10.76□□□□□ -0.69
RTF1-201ENST00000389629 PRR9Q5T870 116 aa10.75□□□□□ -0.69
RTF1-201ENST00000389629 MSMBP08118 114 aa10.75□□□□□ -0.69
RTF1-201ENST00000389629 ZNF22P17026 224 aaPredicted RBP10.75□□□□□ -0.69
RTF1-201ENST00000389629 IGHV1-58A0A0C4DH39 117 aa10.75□□□□□ -0.69
RTF1-201ENST00000389629 CNFNQ9BYD5 112 aa10.75□□□□□ -0.69
RTF1-201ENST00000389629 SPANXDQ9BXN6 97 aa10.75□□□□□ -0.69
RTF1-201ENST00000389629 RAI1Q7Z5J4 1906 aaPredicted RBP10.75□□□□□ -0.69
RTF1-201ENST00000389629 A8MZ25 164 aa10.74□□□□□ -0.69
RTF1-201ENST00000389629 IGHV4-38-2P0DP08 117 aa10.74□□□□□ -0.69
RTF1-201ENST00000389629 HTN3P15516 51 aa10.74□□□□□ -0.69
RTF1-201ENST00000389629 MED14OSP0DP75 135 aa10.74□□□□□ -0.69
RTF1-201ENST00000389629 CUL9Q8IWT3 2517 aa10.74□□□□□ -0.69
RTF1-201ENST00000389629 COX6B1P14854 86 aa10.74□□□□□ -0.69
RTF1-201ENST00000389629 ZFAND2AQ8N6M9 145 aa10.74□□□□□ -0.69
RTF1-201ENST00000389629 MAPK1IP1LQ8NDC0 245 aa10.74□□□□□ -0.69
RTF1-201ENST00000389629 UBL5Q9BZL1 73 aa10.74□□□□□ -0.69
RTF1-201ENST00000389629 PRO3102Q9H379 93 aa10.74□□□□□ -0.69
RTF1-201ENST00000389629 RPL35AP18077 110 aaKnown RBP10.73□□□□□ -0.69
RTF1-201ENST00000389629 CDIP1Q9H305 208 aa10.73□□□□□ -0.69
RTF1-201ENST00000389629 ATOX1O00244 68 aa10.73□□□□□ -0.69
RTF1-201ENST00000389629 UBE2D1P51668 147 aa10.72□□□□□ -0.69
RTF1-201ENST00000389629 ADORA2A-AS1P86434 159 aa10.72□□□□□ -0.69
RTF1-201ENST00000389629 MIAQ16674 131 aa10.72□□□□□ -0.69
RTF1-201ENST00000389629 PTPRBP23467 1997 aa10.72□□□□□ -0.69
RTF1-201ENST00000389629 TMEM223A0PJW6 202 aa10.72□□□□□ -0.69
RTF1-201ENST00000389629 LINC00643Q86TS7 51 aa10.72□□□□□ -0.69
RTF1-201ENST00000389629 H3BUA1 57 aa10.72□□□□□ -0.69
RTF1-201ENST00000389629 SETD2Q9BYW2 2564 aaPredicted RBP10.71□□□□□ -0.69
RTF1-201ENST00000389629 U3KQE9 123 aa10.71□□□□□ -0.69
RTF1-201ENST00000389629 TMEM243Q9BU79 118 aa10.71□□□□□ -0.7
RTF1-201ENST00000389629 SND1-IT1Q9HBX3 110 aa10.71□□□□□ -0.7
RTF1-201ENST00000389629 F8W735 103 aaPredicted RBP10.7□□□□□ -0.7
RTF1-201ENST00000389629 LINC01619G3V211 115 aa10.7□□□□□ -0.7
RTF1-201ENST00000389629 DEFB130BP0DP73 79 aa10.7□□□□□ -0.7
RTF1-201ENST00000389629 DEFB130AP0DP74 79 aa10.7□□□□□ -0.7
RTF1-201ENST00000389629 IGHV4-61A0A0C4DH41 118 aa10.7□□□□□ -0.7
RTF1-201ENST00000389629 EBI3Q14213 229 aa10.7□□□□□ -0.7
RTF1-201ENST00000389629 DAZ2Q13117 558 aaKnown RBP10.7□□□□□ -0.7
RTF1-201ENST00000389629 RBMY1FQ15415 496 aaKnown RBP10.7□□□□□ -0.7
RTF1-201ENST00000389629 DAZ4Q86SG3 579 aaKnown RBP10.7□□□□□ -0.7
RTF1-201ENST00000389629 DAZ3Q9NR90 486 aaKnown RBP10.7□□□□□ -0.7
RTF1-201ENST00000389629 VSIG2Q96IQ7 327 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms