RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 IGKV1D-43A0A0B4J1Z2 117 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 IGLV3-1P01715 115 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 IFITM1P13164 125 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 C17orf58Q2M2W7 97 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 Q6JHZ5 121 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 TYMSOSQ8TAI1 123 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 COL11A2P13942 1736 aaPredicted RBP3.06□□□□□ -1.92
USH2A-202ENST00000366942 ARTNQ5T4W7 220 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 C2orf66Q6UXQ4 117 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 STAB1Q9NY15 2570 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 LINC00269Q8N2A0 174 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 NUP35Q8NFH5 326 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 ZNF625Q96I27 306 aaPredicted RBP3.06□□□□□ -1.92
USH2A-202ENST00000366942 RITA1Q96K30 269 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 LINC00467Q9BRT7 94 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 TUBGCP6Q96RT7 1819 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 TRBV10-2A0A0K0K1G8 114 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 IGLC1P0CG04 106 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 DDTP30046 118 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 GNG5P63218 68 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 TFF1P04155 84 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 CRYBA4P53673 196 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 HIST1H4AP62805 103 aaKnown RBP3.05□□□□□ -1.92
USH2A-202ENST00000366942 Q6ZTC4 211 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 AGMATQ9BSE5 352 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 RBM12B-AS1Q9P1G2 102 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 MYH7P12883 1935 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 DOCK9Q9BZ29 2069 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 SCN1AP35498 2009 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 A0A087X0M5 115 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 A0A1B0GX30 115 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 IGLV1-47P01700 117 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 BAALC-AS2P0C853 105 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 OR10D4PQ8NGN7 298 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 PRO1933Q9H354 126 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 ORMDL1Q9P0S3 153 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 BRI3O95415 125 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 C1QBP02746 253 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 B5MCH6 92 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 LECT2O14960 151 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 GFRA4Q9GZZ7 299 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 ZFC3H1O60293 1989 aaKnown RBP3.05□□□□□ -1.92
USH2A-202ENST00000366942 ZNF345Q14585 488 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 LINC01545Q5VT33 79 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 Q6ZS46 218 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 FAM19A3Q7Z5A8 133 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 PROK2Q9HC23 129 aa3.05□□□□□ -1.92
USH2A-202ENST00000366942 FAM236AA0A1B0GUQ0 79 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 FAM236BA0A1B0GV22 79 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 C10orf142B7Z368 130 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 M0QXV9 152 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 RBX1P62877 108 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 LOC285556D6RIA3 1793 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 RPL37AP8A6NKH3 93 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 A8MZ25 164 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 NDUFS6O75380 124 aaKnown RBP3.04□□□□□ -1.92
USH2A-202ENST00000366942 C10orf25Q5T742 122 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 Q86TA4 180 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 CHCHD1Q96BP2 118 aaKnown RBP3.04□□□□□ -1.92
USH2A-202ENST00000366942 PRR15LQ9BU68 103 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 NUPR1O60356 82 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 RGPD2P0DJD1 1756 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 SBF2Q86WG5 1849 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 A0A1W2PNU3 283 aaPredicted RBP3.04□□□□□ -1.92
USH2A-202ENST00000366942 EBI3Q14213 229 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 UTF1Q5T230 341 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 WFDC9Q8NEX5 89 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 C14orf132Q9NPU4 83 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 MGAM2Q2M2H8 2515 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 PRSS47A8MTI9 375 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 CXCL1P09341 107 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 ZNF726P1Q15940 193 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 C20orf197Q8N268 126 aa3.04□□□□□ -1.92
USH2A-202ENST00000366942 H3BNG1 76 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 M0R378 163 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 TFF3Q07654 80 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 IGFL4Q6B9Z1 124 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 C9JAW5 83 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 OXTP01178 125 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 EGFEM1PQ0D2K5 195 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 Q6ZTI0 123 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 AGPAT4-IT1Q9H0P7 198 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 RETNQ9HD89 108 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 SYS1-DBNDD2H3BUS1 97 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 RTL8CO15255 209 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 AVPP01185 164 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 CD164L2Q6UWJ8 174 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 MAPKAPK5-AS1Q8N8E1 139 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 C9orf163Q8N9P6 203 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 CLUHP3Q96NS8 147 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 SHROOM3Q8TF72 1996 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 LTBP1Q14766 1721 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 MYOFQ9NZM1 2061 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 IGLV9-49A0A0B4J1Y8 123 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 TRBV6-1A0A0K0K1D8 114 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 Q8N8P6 123 aa3.03□□□□□ -1.92
USH2A-202ENST00000366942 TRBV6-8A0A0A6YYG3 113 aa3.03□□□□□ -1.93
USH2A-202ENST00000366942 IGKV1-9A0A0C4DH69 117 aa3.03□□□□□ -1.93
USH2A-202ENST00000366942 RNASE7Q9H1E1 156 aaKnown RBP3.03□□□□□ -1.93
USH2A-202ENST00000366942 DKK2Q9UBU2 259 aa3.03□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms