RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 NACAE9PAV3 2078 aa14.14□□□□□ -0.15
CLN3-205ENST00000359984 RHODO00212 210 aa14.13□□□□□ -0.15
CLN3-205ENST00000359984 ZFP2Q6ZN57 461 aa14.13□□□□□ -0.15
CLN3-205ENST00000359984 PRELID3AQ96N28 172 aa14.13□□□□□ -0.15
CLN3-205ENST00000359984 MEGF8Q7Z7M0 2845 aa14.12□□□□□ -0.15
CLN3-205ENST00000359984 SPART-AS1P0CW21 52 aa14.12□□□□□ -0.15
CLN3-205ENST00000359984 Q6ZSN1 163 aa14.12□□□□□ -0.15
CLN3-205ENST00000359984 C11orf68Q9H3H3 251 aaKnown RBP14.12□□□□□ -0.15
CLN3-205ENST00000359984 LINC00587B1AMM8 73 aa14.12□□□□□ -0.15
CLN3-205ENST00000359984 NIT1Q86X76 327 aa14.12□□□□□ -0.15
CLN3-205ENST00000359984 C18orf15Q96N68 181 aa14.12□□□□□ -0.15
CLN3-205ENST00000359984 AMTP48728 403 aa14.11□□□□□ -0.15
CLN3-205ENST00000359984 ZMAT4Q9H898 229 aa14.11□□□□□ -0.15
CLN3-205ENST00000359984 A0A0J9YWU9 116 aa14.1□□□□□ -0.15
CLN3-205ENST00000359984 NPYP01303 97 aa14.1□□□□□ -0.15
CLN3-205ENST00000359984 NRACQ8N912 160 aa14.1□□□□□ -0.15
CLN3-205ENST00000359984 M0QY20 66 aa14.1□□□□□ -0.15
CLN3-205ENST00000359984 PMCHP20382 165 aa14.1□□□□□ -0.15
CLN3-205ENST00000359984 DAD1P61803 113 aa14.1□□□□□ -0.15
CLN3-205ENST00000359984 TNFRSF6BO95407 300 aa14.09□□□□□ -0.15
CLN3-205ENST00000359984 FAM19A2Q8N3H0 131 aa14.09□□□□□ -0.15
CLN3-205ENST00000359984 RPL39LQ96EH5 51 aaKnown RBP14.09□□□□□ -0.15
CLN3-205ENST00000359984 TEX48A0A1B0GUV7 120 aa14.08□□□□□ -0.16
CLN3-205ENST00000359984 CIDEAO60543 219 aa14.08□□□□□ -0.16
CLN3-205ENST00000359984 SCGB1D1O95968 90 aa14.08□□□□□ -0.16
CLN3-205ENST00000359984 PKIAP61925 76 aa14.08□□□□□ -0.16
CLN3-205ENST00000359984 LAMTOR2Q9Y2Q5 125 aa14.08□□□□□ -0.16
CLN3-205ENST00000359984 HSBP1O75506 76 aa14.07□□□□□ -0.16
CLN3-205ENST00000359984 ZNF664Q8N3J9 261 aa14.07□□□□□ -0.16
CLN3-205ENST00000359984 Q8N976 141 aa14.07□□□□□ -0.16
CLN3-205ENST00000359984 EDA2RQ9HAV5 297 aa14.07□□□□□ -0.16
CLN3-205ENST00000359984 P0DMU3 169 aa14.06□□□□□ -0.16
CLN3-205ENST00000359984 FAM231AP0DMU4 169 aa14.06□□□□□ -0.16
CLN3-205ENST00000359984 FAM231CP0DMU5 169 aa14.06□□□□□ -0.16
CLN3-205ENST00000359984 FHL2Q14192 279 aa14.06□□□□□ -0.16
CLN3-205ENST00000359984 CHCHD1Q96BP2 118 aaKnown RBP14.06□□□□□ -0.16
CLN3-205ENST00000359984 HUWE1Q7Z6Z7 4374 aaKnown RBP14.06□□□□□ -0.16
CLN3-205ENST00000359984 TRGV4A0A0C4DH28 118 aa14.06□□□□□ -0.16
CLN3-205ENST00000359984 C12orf74Q32Q52 190 aa14.06□□□□□ -0.16
CLN3-205ENST00000359984 RNASEKQ6P5S7 137 aaKnown RBP14.06□□□□□ -0.16
CLN3-205ENST00000359984 Q9UF83 564 aa14.06□□□□□ -0.16
CLN3-205ENST00000359984 H7C1H1 209 aa14.05□□□□□ -0.16
CLN3-205ENST00000359984 DNAH9Q9NYC9 4486 aa14.05□□□□□ -0.16
CLN3-205ENST00000359984 LOC389332A0A1B0GUA5 103 aa14.04□□□□□ -0.16
CLN3-205ENST00000359984 PPP1R17O96001 155 aa14.04□□□□□ -0.16
CLN3-205ENST00000359984 ANKRD39Q53RE8 183 aa14.04□□□□□ -0.16
CLN3-205ENST00000359984 SLC25A29Q8N8R3 303 aa14.04□□□□□ -0.16
CLN3-205ENST00000359984 LINC00614P0C842 121 aa14.04□□□□□ -0.16
CLN3-205ENST00000359984 TEX43Q6ZNM6 134 aa14.04□□□□□ -0.16
CLN3-205ENST00000359984 PRO1933Q9H354 126 aa14.04□□□□□ -0.16
CLN3-205ENST00000359984 MAP1LC3AQ9H492 121 aa14.04□□□□□ -0.16
CLN3-205ENST00000359984 C3orf79P0CE67 100 aa14.03□□□□□ -0.16
CLN3-205ENST00000359984 TRBV6-5A0A0K0K1A5 114 aa14.02□□□□□ -0.16
CLN3-205ENST00000359984 K7EQD1 137 aa14.02□□□□□ -0.16
CLN3-205ENST00000359984 ATP5G1P05496 136 aa14.02□□□□□ -0.16
CLN3-205ENST00000359984 KRTDAPP60985 99 aa14.02□□□□□ -0.16
CLN3-205ENST00000359984 SUMO2P61956 95 aaKnown RBP14.02□□□□□ -0.16
CLN3-205ENST00000359984 C20orf78Q9BR46 151 aa14.02□□□□□ -0.16
CLN3-205ENST00000359984 PRSS47A8MTI9 375 aa14.01□□□□□ -0.17
CLN3-205ENST00000359984 TSTD3H0UI37 97 aa14.01□□□□□ -0.17
CLN3-205ENST00000359984 NHLRC4P0CG21 123 aaPredicted RBP14.01□□□□□ -0.17
CLN3-205ENST00000359984 IFI27P40305 119 aaPredicted RBP14.01□□□□□ -0.17
CLN3-205ENST00000359984 NEXN-AS1Q8NBZ9 246 aa14.01□□□□□ -0.17
CLN3-205ENST00000359984 ST20Q9HBF5 79 aa14.01□□□□□ -0.17
CLN3-205ENST00000359984 COL7A1Q02388 2944 aa14.01□□□□□ -0.17
CLN3-205ENST00000359984 TRBV6-4A0A1B0GX49 114 aa14.01□□□□□ -0.17
CLN3-205ENST00000359984 C11orf45Q8TAV5 145 aa14.01□□□□□ -0.17
CLN3-205ENST00000359984 HHLA3Q9XRX5 114 aa14.01□□□□□ -0.17
CLN3-205ENST00000359984 IGHV1-24A0A0C4DH33 117 aa14□□□□□ -0.17
CLN3-205ENST00000359984 PRSS3P2Q8NHM4 247 aa14□□□□□ -0.17
CLN3-205ENST00000359984 NANOS2P60321 138 aaKnown RBP13.99□□□□□ -0.17
CLN3-205ENST00000359984 IGLV2-18A0A075B6J9 118 aa13.99□□□□□ -0.17
CLN3-205ENST00000359984 TRBV10-1A0A0K0K1A3 114 aa13.99□□□□□ -0.17
CLN3-205ENST00000359984 HTN3P15516 51 aa13.99□□□□□ -0.17
CLN3-205ENST00000359984 POLR2KP53803 58 aaKnown RBP13.99□□□□□ -0.17
CLN3-205ENST00000359984 Q6ZTC4 211 aa13.99□□□□□ -0.17
CLN3-205ENST00000359984 TMEM70Q9BUB7 260 aa13.99□□□□□ -0.17
CLN3-205ENST00000359984 SMIM2Q9BVW6 85 aa13.99□□□□□ -0.17
CLN3-205ENST00000359984 TNFRSF18Q9Y5U5 241 aa13.99□□□□□ -0.17
CLN3-205ENST00000359984 SDHAF1A6NFY7 115 aa13.98□□□□□ -0.17
CLN3-205ENST00000359984 F5H768 121 aa13.98□□□□□ -0.17
CLN3-205ENST00000359984 CRYBA4P53673 196 aa13.98□□□□□ -0.17
CLN3-205ENST00000359984 RHOHQ15669 191 aa13.98□□□□□ -0.17
CLN3-205ENST00000359984 DNAJC30Q96LL9 226 aa13.98□□□□□ -0.17
CLN3-205ENST00000359984 PRO0255Q9UI72 69 aa13.98□□□□□ -0.17
CLN3-205ENST00000359984 PRKDCP78527 4128 aaKnown RBP13.98□□□□□ -0.17
CLN3-205ENST00000359984 DDTP30046 118 aa13.97□□□□□ -0.17
CLN3-205ENST00000359984 PMCHL1Q16048 86 aa13.97□□□□□ -0.17
CLN3-205ENST00000359984 NEGR1Q7Z3B1 354 aa13.97□□□□□ -0.17
CLN3-205ENST00000359984 Q8N8P6 123 aa13.97□□□□□ -0.17
CLN3-205ENST00000359984 LOC100131303A0A0U1RQF7 123 aa13.97□□□□□ -0.17
CLN3-205ENST00000359984 RPL32P62910 135 aaKnown RBP13.97□□□□□ -0.17
CLN3-205ENST00000359984 FA2HQ7L5A8 372 aa13.97□□□□□ -0.17
CLN3-205ENST00000359984 NXT2Q9NPJ8 142 aaKnown RBP13.97□□□□□ -0.17
CLN3-205ENST00000359984 ZNRF2Q8NHG8 242 aa13.96□□□□□ -0.17
CLN3-205ENST00000359984 PRADC1Q9BSG0 188 aa13.96□□□□□ -0.17
CLN3-205ENST00000359984 TRBV7-3A0A075B6L6 115 aa13.95□□□□□ -0.18
CLN3-205ENST00000359984 GAGE12JA6NER3 117 aa13.95□□□□□ -0.18
CLN3-205ENST00000359984 VCYO14598 125 aa13.95□□□□□ -0.18
CLN3-205ENST00000359984 PAX4O43316 350 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms