RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PMVKQ15126 192 aa15.29■□□□□ 0.04
CCDC88B-203ENST00000359902 TAL2Q16559 108 aa15.29■□□□□ 0.04
CCDC88B-203ENST00000359902 UFSP1Q6NVU6 142 aa15.29■□□□□ 0.04
CCDC88B-203ENST00000359902 TLN2Q9Y4G6 2542 aa15.28■□□□□ 0.04
CCDC88B-203ENST00000359902 DEFB114Q30KQ6 69 aa15.28■□□□□ 0.04
CCDC88B-203ENST00000359902 PRADC1Q9BSG0 188 aa15.28■□□□□ 0.04
CCDC88B-203ENST00000359902 C11orf86A6NJI1 115 aa15.27■□□□□ 0.04
CCDC88B-203ENST00000359902 DYNLRB2Q8TF09 96 aa15.27■□□□□ 0.04
CCDC88B-203ENST00000359902 MAP6D1Q9H9H5 199 aa15.27■□□□□ 0.04
CCDC88B-203ENST00000359902 ITPR3Q14573 2671 aa15.27■□□□□ 0.04
CCDC88B-203ENST00000359902 PHLDA1Q8WV24 401 aaPredicted RBP15.27■□□□□ 0.03
CCDC88B-203ENST00000359902 A0A1W2PPM0 123 aa15.26■□□□□ 0.03
CCDC88B-203ENST00000359902 PRM2P04554 102 aa15.26■□□□□ 0.03
CCDC88B-203ENST00000359902 DNAJC9-AS1A6NH13 148 aa15.26■□□□□ 0.03
CCDC88B-203ENST00000359902 K7ERJ3 54 aa15.26■□□□□ 0.03
CCDC88B-203ENST00000359902 RHOHQ15669 191 aa15.26■□□□□ 0.03
CCDC88B-203ENST00000359902 NSUN5P1Q3KNT7 163 aa15.26■□□□□ 0.03
CCDC88B-203ENST00000359902 K7EP34 96 aa15.25■□□□□ 0.03
CCDC88B-203ENST00000359902 P0DMU3 169 aa15.25■□□□□ 0.03
CCDC88B-203ENST00000359902 FAM231AP0DMU4 169 aa15.25■□□□□ 0.03
CCDC88B-203ENST00000359902 FAM231CP0DMU5 169 aa15.25■□□□□ 0.03
CCDC88B-203ENST00000359902 EMP1P54849 157 aa15.25■□□□□ 0.03
CCDC88B-203ENST00000359902 PAPPA-AS1Q5QFB9 102 aa15.25■□□□□ 0.03
CCDC88B-203ENST00000359902 HIST1H4GQ99525 98 aa15.25■□□□□ 0.03
CCDC88B-203ENST00000359902 SPAG8Q99932 426 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-203ENST00000359902 NHP2Q9NX24 153 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-203ENST00000359902 CD300EQ496F6 205 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-203ENST00000359902 TEX29Q8N6K0 151 aa15.25■□□□□ 0.03
CCDC88B-203ENST00000359902 TRBV7-3A0A075B6L6 115 aa15.24■□□□□ 0.03
CCDC88B-203ENST00000359902 SAMD5Q5TGI4 173 aa15.24■□□□□ 0.03
CCDC88B-203ENST00000359902 HIST2H2BCQ6DN03 193 aa15.24■□□□□ 0.03
CCDC88B-203ENST00000359902 NBPF19A0A087WUL8 3843 aa15.24■□□□□ 0.03
CCDC88B-203ENST00000359902 I3L3M4 83 aa15.23■□□□□ 0.03
CCDC88B-203ENST00000359902 SAP30O75446 220 aa15.22■□□□□ 0.03
CCDC88B-203ENST00000359902 RAX2Q96IS3 184 aa15.22■□□□□ 0.03
CCDC88B-203ENST00000359902 EDA2RQ9HAV5 297 aa15.22■□□□□ 0.03
CCDC88B-203ENST00000359902 ESM1Q9NQ30 184 aa15.22■□□□□ 0.03
CCDC88B-203ENST00000359902 SONP18583 2426 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-203ENST00000359902 IGHV3-73A0A0B4J1V6 119 aa15.22■□□□□ 0.03
CCDC88B-203ENST00000359902 TMEM238C9JI98 176 aa15.21■□□□□ 0.03
CCDC88B-203ENST00000359902 M0R2P5 195 aa15.21■□□□□ 0.03
CCDC88B-203ENST00000359902 PROK1P58294 105 aa15.21■□□□□ 0.03
CCDC88B-203ENST00000359902 C20orf203Q8NBC4 194 aa15.21■□□□□ 0.03
CCDC88B-203ENST00000359902 OPRPNQ99935 248 aaPredicted RBP15.21■□□□□ 0.03
CCDC88B-203ENST00000359902 AKAP9Q99996 3911 aa15.21■□□□□ 0.03
CCDC88B-203ENST00000359902 ZNF815PA8K554 130 aa15.21■□□□□ 0.02
CCDC88B-203ENST00000359902 ZNRF2Q8NHG8 242 aa15.21■□□□□ 0.02
CCDC88B-203ENST00000359902 SPCS1Q9Y6A9 102 aa15.21■□□□□ 0.02
CCDC88B-203ENST00000359902 FABP2P12104 132 aa15.2■□□□□ 0.02
CCDC88B-203ENST00000359902 G3V4G9 280 aa15.2■□□□□ 0.02
CCDC88B-203ENST00000359902 C12orf74Q32Q52 190 aa15.2■□□□□ 0.02
CCDC88B-203ENST00000359902 C11orf44Q8N8P7 122 aa15.2■□□□□ 0.02
CCDC88B-203ENST00000359902 ZNF415Q09FC8 603 aa15.19■□□□□ 0.02
CCDC88B-203ENST00000359902 PIK3CD-AS1Q5SR53 167 aa15.19■□□□□ 0.02
CCDC88B-203ENST00000359902 A8MWV9 139 aa15.18■□□□□ 0.02
CCDC88B-203ENST00000359902 HERVK_113P61574 105 aa15.18■□□□□ 0.02
CCDC88B-203ENST00000359902 LINC01587Q99440 93 aa15.18■□□□□ 0.02
CCDC88B-203ENST00000359902 PTH2Q96A98 100 aa15.18■□□□□ 0.02
CCDC88B-203ENST00000359902 PLEKHB2Q96CS7 222 aa15.18■□□□□ 0.02
CCDC88B-203ENST00000359902 LINC00467Q9BRT7 94 aa15.18■□□□□ 0.02
CCDC88B-203ENST00000359902 A0A1W2PRX2 142 aa15.17■□□□□ 0.02
CCDC88B-203ENST00000359902 SCGB2A2Q13296 93 aa15.17■□□□□ 0.02
CCDC88B-203ENST00000359902 FHL3Q13643 280 aa15.17■□□□□ 0.02
CCDC88B-203ENST00000359902 C11orf72Q8NBR9 251 aa15.17■□□□□ 0.02
CCDC88B-203ENST00000359902 TENM4Q6N022 2769 aa15.17■□□□□ 0.02
CCDC88B-203ENST00000359902 TMEM170BQ5T4T1 132 aa15.17■□□□□ 0.02
CCDC88B-203ENST00000359902 CD28P10747 220 aa15.16■□□□□ 0.02
CCDC88B-203ENST00000359902 ODF3L2Q3SX64 289 aa15.16■□□□□ 0.02
CCDC88B-203ENST00000359902 NFE4Q86UQ8 179 aa15.16■□□□□ 0.02
CCDC88B-203ENST00000359902 OR5A1Q8NGJ0 315 aa15.16■□□□□ 0.02
CCDC88B-203ENST00000359902 CHD6Q8TD26 2715 aa15.16■□□□□ 0.02
CCDC88B-203ENST00000359902 FLNAP21333 2647 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-203ENST00000359902 IGLL5B9A064 214 aa15.16■□□□□ 0.02
CCDC88B-203ENST00000359902 CCL24O00175 119 aa15.16■□□□□ 0.02
CCDC88B-203ENST00000359902 SCGB1D4Q6XE38 83 aa15.16■□□□□ 0.02
CCDC88B-203ENST00000359902 Q6ZSN1 163 aa15.16■□□□□ 0.02
CCDC88B-203ENST00000359902 CCDC168Q8NDH2 2452 aa15.15■□□□□ 0.02
CCDC88B-203ENST00000359902 TRAV25A0A0B4J276 109 aa15.15■□□□□ 0.02
CCDC88B-203ENST00000359902 INSP01308 110 aa15.15■□□□□ 0.02
CCDC88B-203ENST00000359902 KRTAP1-1Q07627 177 aa15.15■□□□□ 0.02
CCDC88B-203ENST00000359902 CFAP126Q5VTH2 177 aa15.15■□□□□ 0.02
CCDC88B-203ENST00000359902 CLUHP3Q96NS8 147 aa15.15■□□□□ 0.02
CCDC88B-203ENST00000359902 Q9UF83 564 aa15.15■□□□□ 0.02
CCDC88B-203ENST00000359902 A0A1B0GWB2 263 aa15.15■□□□□ 0.02
CCDC88B-203ENST00000359902 NACAE9PAV3 2078 aa15.14■□□□□ 0.01
CCDC88B-203ENST00000359902 NF1P21359 2839 aa15.14■□□□□ 0.01
CCDC88B-203ENST00000359902 IGLV4-3A0A075B6K6 122 aa15.14■□□□□ 0.01
CCDC88B-203ENST00000359902 TSPEAR-AS2P59090 65 aa15.14■□□□□ 0.01
CCDC88B-203ENST00000359902 TNFRSF18Q9Y5U5 241 aa15.14■□□□□ 0.01
CCDC88B-203ENST00000359902 SPXQ9BT56 116 aa15.12■□□□□ 0.01
CCDC88B-203ENST00000359902 BEAN1Q3B7T3 259 aa15.12■□□□□ 0.01
CCDC88B-203ENST00000359902 CITED2Q99967 270 aaPredicted RBP15.12■□□□□ 0.01
CCDC88B-203ENST00000359902 XCL2Q9UBD3 114 aa15.12■□□□□ 0.01
CCDC88B-203ENST00000359902 VCX2Q9H322 139 aa15.11■□□□□ 0.01
CCDC88B-203ENST00000359902 MRPL16Q9NX20 251 aaKnown RBP15.11■□□□□ 0.01
CCDC88B-203ENST00000359902 PDZD2O15018 2839 aa15.11■□□□□ 0.01
CCDC88B-203ENST00000359902 A0A0J9YY99 117 aa15.11■□□□□ 0.01
CCDC88B-203ENST00000359902 FAM104AQ969W3 186 aa15.11■□□□□ 0.01
CCDC88B-203ENST00000359902 PYGO1Q9Y3Y4 419 aa15.11■□□□□ 0.01
CCDC88B-203ENST00000359902 CIDEAO60543 219 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms