RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 NXT2Q9NPJ8 142 aaKnown RBP13.3□□□□□ -0.28
USP39-201ENST00000323701 SUMO2P61956 95 aaKnown RBP13.3□□□□□ -0.28
USP39-201ENST00000323701 MORN3Q6PF18 240 aaPredicted RBP13.3□□□□□ -0.28
USP39-201ENST00000323701 NEGR1Q7Z3B1 354 aa13.3□□□□□ -0.28
USP39-201ENST00000323701 TP73-AS1Q9UF72 201 aa13.3□□□□□ -0.28
USP39-201ENST00000323701 UBE2V1Q13404 147 aa13.29□□□□□ -0.28
USP39-201ENST00000323701 C3orf56Q8N813 242 aa13.29□□□□□ -0.28
USP39-201ENST00000323701 IL17DQ8TAD2 202 aa13.29□□□□□ -0.28
USP39-201ENST00000323701 K7EP13 123 aa13.28□□□□□ -0.28
USP39-201ENST00000323701 ZNF56Q15929 161 aa13.28□□□□□ -0.28
USP39-201ENST00000323701 UFSP1Q6NVU6 142 aa13.28□□□□□ -0.28
USP39-201ENST00000323701 SMIM2Q9BVW6 85 aa13.28□□□□□ -0.28
USP39-201ENST00000323701 COX11Q9Y6N1 276 aa13.28□□□□□ -0.28
USP39-201ENST00000323701 M0QY20 66 aa13.28□□□□□ -0.28
USP39-201ENST00000323701 Q9UF83 564 aa13.28□□□□□ -0.28
USP39-201ENST00000323701 PLAC8L1A1L4L8 177 aa13.27□□□□□ -0.28
USP39-201ENST00000323701 Q6ZSN1 163 aa13.27□□□□□ -0.28
USP39-201ENST00000323701 OXLD1Q5BKU9 147 aa13.27□□□□□ -0.29
USP39-201ENST00000323701 CFAP126Q5VTH2 177 aa13.27□□□□□ -0.29
USP39-201ENST00000323701 HBDP02042 147 aa13.26□□□□□ -0.29
USP39-201ENST00000323701 P0DMU3 169 aa13.26□□□□□ -0.29
USP39-201ENST00000323701 FAM231AP0DMU4 169 aa13.26□□□□□ -0.29
USP39-201ENST00000323701 FAM231CP0DMU5 169 aa13.26□□□□□ -0.29
USP39-201ENST00000323701 C20orf78Q9BR46 151 aa13.26□□□□□ -0.29
USP39-201ENST00000323701 CSTL1Q9H114 145 aa13.26□□□□□ -0.29
USP39-201ENST00000323701 hDV102S1A0JD36 115 aa13.25□□□□□ -0.29
USP39-201ENST00000323701 H0Y8G0 127 aa13.25□□□□□ -0.29
USP39-201ENST00000323701 WIPF1O43516 503 aa13.25□□□□□ -0.29
USP39-201ENST00000323701 HINT1P49773 126 aaPredicted RBP13.25□□□□□ -0.29
USP39-201ENST00000323701 TMEM158Q8WZ71 300 aa13.25□□□□□ -0.29
USP39-201ENST00000323701 TMEM263Q8WUH6 116 aaKnown RBP13.25□□□□□ -0.29
USP39-201ENST00000323701 SPXQ9BT56 116 aa13.25□□□□□ -0.29
USP39-201ENST00000323701 Q6ZTI0 123 aa13.24□□□□□ -0.29
USP39-201ENST00000323701 PTH2Q96A98 100 aa13.24□□□□□ -0.29
USP39-201ENST00000323701 C1QTNF4Q9BXJ3 329 aa13.24□□□□□ -0.29
USP39-201ENST00000323701 FCER1GP30273 86 aa13.24□□□□□ -0.29
USP39-201ENST00000323701 COTL1Q14019 142 aa13.24□□□□□ -0.29
USP39-201ENST00000323701 C18orf15Q96N68 181 aa13.24□□□□□ -0.29
USP39-201ENST00000323701 PMCHL2Q9BQD1 86 aa13.24□□□□□ -0.29
USP39-201ENST00000323701 HSPB8Q9UJY1 196 aa13.24□□□□□ -0.29
USP39-201ENST00000323701 TRGV1A0A0A0MS02 117 aa13.23□□□□□ -0.29
USP39-201ENST00000323701 POLR2KP53803 58 aaKnown RBP13.23□□□□□ -0.29
USP39-201ENST00000323701 LAGE3Q14657 143 aa13.23□□□□□ -0.29
USP39-201ENST00000323701 MAP1LC3CQ9BXW4 147 aa13.23□□□□□ -0.29
USP39-201ENST00000323701 NOP10Q9NPE3 64 aaKnown RBP13.23□□□□□ -0.29
USP39-201ENST00000323701 DNAH3Q8TD57 4116 aa13.23□□□□□ -0.29
USP39-201ENST00000323701 NOTCH1P46531 2555 aa13.23□□□□□ -0.29
USP39-201ENST00000323701 A8MWV9 139 aa13.22□□□□□ -0.29
USP39-201ENST00000323701 C12orf54Q6X4T0 127 aa13.22□□□□□ -0.29
USP39-201ENST00000323701 ST20Q9HBF5 79 aa13.22□□□□□ -0.29
USP39-201ENST00000323701 PIK3CD-AS1Q5SR53 167 aa13.22□□□□□ -0.29
USP39-201ENST00000323701 SDHAF1A6NFY7 115 aa13.21□□□□□ -0.29
USP39-201ENST00000323701 SHISA2Q6UWI4 295 aa13.21□□□□□ -0.29
USP39-201ENST00000323701 PET117Q6UWS5 81 aa13.21□□□□□ -0.29
USP39-201ENST00000323701 KRTAP10-11P60412 298 aa13.21□□□□□ -0.3
USP39-201ENST00000323701 Q6ZVH6 145 aa13.21□□□□□ -0.3
USP39-201ENST00000323701 RS1O15537 224 aa13.2□□□□□ -0.3
USP39-201ENST00000323701 NBEAL1Q6ZS30 2694 aa13.2□□□□□ -0.3
USP39-201ENST00000323701 TRBV6-5A0A0K0K1A5 114 aa13.2□□□□□ -0.3
USP39-201ENST00000323701 PPP1R17O96001 155 aa13.2□□□□□ -0.3
USP39-201ENST00000323701 RRN3P1Q2M238 152 aa13.2□□□□□ -0.3
USP39-201ENST00000323701 LINC01545Q5VT33 79 aa13.2□□□□□ -0.3
USP39-201ENST00000323701 ZNF479Q96JC4 524 aa13.2□□□□□ -0.3
USP39-201ENST00000323701 OR4C5Q8NGB2 326 aa13.19□□□□□ -0.3
USP39-201ENST00000323701 IFI27L1Q96BM0 104 aa13.19□□□□□ -0.3
USP39-201ENST00000323701 C16orf74Q96GX8 76 aa13.19□□□□□ -0.3
USP39-201ENST00000323701 NUDT3O95989 172 aa13.18□□□□□ -0.3
USP39-201ENST00000323701 IGHV3-53P01767 116 aa13.18□□□□□ -0.3
USP39-201ENST00000323701 DAZ2Q13117 558 aaKnown RBP13.18□□□□□ -0.3
USP39-201ENST00000323701 X6R8D5 127 aa13.18□□□□□ -0.3
USP39-201ENST00000323701 TRBV27A0A0K0K1C4 114 aa13.17□□□□□ -0.3
USP39-201ENST00000323701 EMP1P54849 157 aa13.17□□□□□ -0.3
USP39-201ENST00000323701 RPL32P62910 135 aaKnown RBP13.17□□□□□ -0.3
USP39-201ENST00000323701 IGHV4-30-4P0DP06 118 aa13.16□□□□□ -0.3
USP39-201ENST00000323701 DEFB135Q30KP9 77 aa13.16□□□□□ -0.3
USP39-201ENST00000323701 EDA2RQ9HAV5 297 aa13.16□□□□□ -0.3
USP39-201ENST00000323701 GAGE12BA1L429 117 aa13.15□□□□□ -0.3
USP39-201ENST00000323701 VCYO14598 125 aa13.15□□□□□ -0.3
USP39-201ENST00000323701 GAGE7O76087 117 aa13.15□□□□□ -0.3
USP39-201ENST00000323701 GAGE12FP0CL80 117 aa13.15□□□□□ -0.3
USP39-201ENST00000323701 GAGE12GP0CL81 117 aa13.15□□□□□ -0.3
USP39-201ENST00000323701 GAGE12IP0CL82 117 aa13.15□□□□□ -0.3
USP39-201ENST00000323701 LGALS9BQ3B8N2 356 aa13.15□□□□□ -0.3
USP39-201ENST00000323701 ORMDL2Q53FV1 153 aa13.15□□□□□ -0.3
USP39-201ENST00000323701 ZFP2Q6ZN57 461 aa13.15□□□□□ -0.3
USP39-201ENST00000323701 NEXN-AS1Q8NBZ9 246 aa13.14□□□□□ -0.31
USP39-201ENST00000323701 OVOL2Q9BRP0 275 aa13.14□□□□□ -0.31
USP39-201ENST00000323701 VAMP3Q15836 100 aa13.14□□□□□ -0.31
USP39-201ENST00000323701 TOMM6Q96B49 74 aa13.14□□□□□ -0.31
USP39-201ENST00000323701 HSBP1L1C9JCN9 74 aa13.13□□□□□ -0.31
USP39-201ENST00000323701 RHODO00212 210 aa13.13□□□□□ -0.31
USP39-201ENST00000323701 TSHBP01222 138 aa13.13□□□□□ -0.31
USP39-201ENST00000323701 RPL39P62891 51 aaKnown RBP13.13□□□□□ -0.31
USP39-201ENST00000323701 SLC25A34Q6PIV7 304 aa13.13□□□□□ -0.31
USP39-201ENST00000323701 C2orf66Q6UXQ4 117 aa13.13□□□□□ -0.31
USP39-201ENST00000323701 DKK2Q9UBU2 259 aa13.13□□□□□ -0.31
USP39-201ENST00000323701 K7EMI3 77 aa13.12□□□□□ -0.31
USP39-201ENST00000323701 MPV17L2Q567V2 206 aa13.12□□□□□ -0.31
USP39-201ENST00000323701 KIR2DL5BQ8NHK3 375 aa13.12□□□□□ -0.31
USP39-201ENST00000323701 KIR2DL4Q99706 377 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms