RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 P0DMU3 169 aa12.87□□□□□ -0.35
COL9A1-201ENST00000320755 FAM231AP0DMU4 169 aa12.87□□□□□ -0.35
COL9A1-201ENST00000320755 FAM231CP0DMU5 169 aa12.87□□□□□ -0.35
COL9A1-201ENST00000320755 FOXI2Q6ZQN5 318 aa12.87□□□□□ -0.35
COL9A1-201ENST00000320755 TEX48A0A1B0GUV7 120 aa12.86□□□□□ -0.35
COL9A1-201ENST00000320755 APOMO95445 188 aa12.86□□□□□ -0.35
COL9A1-201ENST00000320755 ZNRF2Q8NHG8 242 aa12.86□□□□□ -0.35
COL9A1-201ENST00000320755 TRBV27A0A0K0K1C4 114 aa12.86□□□□□ -0.35
COL9A1-201ENST00000320755 G3V4G9 280 aa12.86□□□□□ -0.35
COL9A1-201ENST00000320755 PROK1P58294 105 aa12.86□□□□□ -0.35
COL9A1-201ENST00000320755 RBMY1A1P0DJD3 496 aaKnown RBP12.85□□□□□ -0.35
COL9A1-201ENST00000320755 RBMY1CP0DJD4 496 aa12.85□□□□□ -0.35
COL9A1-201ENST00000320755 HERVK_113P61574 105 aa12.85□□□□□ -0.35
COL9A1-201ENST00000320755 RBMY1FQ15415 496 aaKnown RBP12.85□□□□□ -0.35
COL9A1-201ENST00000320755 PGPEP1Q9NXJ5 209 aa12.85□□□□□ -0.35
COL9A1-201ENST00000320755 ELANEP08246 267 aa12.85□□□□□ -0.35
COL9A1-201ENST00000320755 RRN3P1Q2M238 152 aa12.85□□□□□ -0.35
COL9A1-201ENST00000320755 Q6YL49 198 aa12.85□□□□□ -0.35
COL9A1-201ENST00000320755 UBE2E2Q96LR5 201 aa12.85□□□□□ -0.35
COL9A1-201ENST00000320755 MRPL16Q9NX20 251 aaKnown RBP12.85□□□□□ -0.35
COL9A1-201ENST00000320755 JMJD1CQ15652 2540 aa12.84□□□□□ -0.35
COL9A1-201ENST00000320755 J3QLI3 93 aa12.84□□□□□ -0.35
COL9A1-201ENST00000320755 TSPEAR-AS2P59090 65 aa12.84□□□□□ -0.35
COL9A1-201ENST00000320755 TMEM141Q96I45 108 aa12.84□□□□□ -0.35
COL9A1-201ENST00000320755 LINC01549A6NIU2 74 aa12.83□□□□□ -0.36
COL9A1-201ENST00000320755 IGHV4-31P0DP07 118 aa12.83□□□□□ -0.36
COL9A1-201ENST00000320755 RPL32P62910 135 aaKnown RBP12.83□□□□□ -0.36
COL9A1-201ENST00000320755 SH2D6Q7Z4S9 175 aa12.83□□□□□ -0.36
COL9A1-201ENST00000320755 BBC3Q96PG8 261 aaPredicted RBP12.83□□□□□ -0.36
COL9A1-201ENST00000320755 ODF3Q96PU9 254 aa12.83□□□□□ -0.36
COL9A1-201ENST00000320755 TMEM89A2RUT3 159 aa12.83□□□□□ -0.36
COL9A1-201ENST00000320755 TRPT1Q86TN4 253 aaKnown RBP12.83□□□□□ -0.36
COL9A1-201ENST00000320755 TIMM17AQ99595 171 aa12.82□□□□□ -0.36
COL9A1-201ENST00000320755 ACANP16112 2415 aa12.82□□□□□ -0.36
COL9A1-201ENST00000320755 LOC107984156A0A0G2JMH3 177 aa12.82□□□□□ -0.36
COL9A1-201ENST00000320755 ARL17AQ8IVW1 177 aa12.82□□□□□ -0.36
COL9A1-201ENST00000320755 Q9UF83 564 aa12.82□□□□□ -0.36
COL9A1-201ENST00000320755 TRBV6-5A0A0K0K1A5 114 aa12.82□□□□□ -0.36
COL9A1-201ENST00000320755 ETDBQ3ZM63 59 aa12.82□□□□□ -0.36
COL9A1-201ENST00000320755 C11orf44Q8N8P7 122 aa12.82□□□□□ -0.36
COL9A1-201ENST00000320755 MTORP42345 2549 aa12.82□□□□□ -0.36
COL9A1-201ENST00000320755 PAPPA-AS1Q5QFB9 102 aa12.81□□□□□ -0.36
COL9A1-201ENST00000320755 RNASE13Q5GAN3 156 aaKnown RBP12.81□□□□□ -0.36
COL9A1-201ENST00000320755 CEMP1Q6PRD7 247 aaPredicted RBP12.8□□□□□ -0.36
COL9A1-201ENST00000320755 TMEM61Q8N0U2 210 aa12.8□□□□□ -0.36
COL9A1-201ENST00000320755 ITPR3Q14573 2671 aa12.8□□□□□ -0.36
COL9A1-201ENST00000320755 APCP25054 2843 aa12.8□□□□□ -0.36
COL9A1-201ENST00000320755 TRGV11A0A075B6L2 103 aa12.8□□□□□ -0.36
COL9A1-201ENST00000320755 A0A0J9YY99 117 aa12.8□□□□□ -0.36
COL9A1-201ENST00000320755 I3L3M4 83 aa12.8□□□□□ -0.36
COL9A1-201ENST00000320755 COTL1Q14019 142 aa12.8□□□□□ -0.36
COL9A1-201ENST00000320755 Q5PR19 223 aa12.8□□□□□ -0.36
COL9A1-201ENST00000320755 NIPBLQ6KC79 2804 aaeCLIP12.79□□□□□ -0.36
COL9A1-201ENST00000320755 A0A0J9YXV3 536 aa12.79□□□□□ -0.36
COL9A1-201ENST00000320755 J3QQQ9 107 aa12.79□□□□□ -0.36
COL9A1-201ENST00000320755 LGALS3P17931 250 aaKnown RBP12.79□□□□□ -0.36
COL9A1-201ENST00000320755 C20orf203Q8NBC4 194 aa12.79□□□□□ -0.36
COL9A1-201ENST00000320755 CR1P17927 2039 aa12.79□□□□□ -0.36
COL9A1-201ENST00000320755 UBR5O95071 2799 aaPredicted RBP12.79□□□□□ -0.36
COL9A1-201ENST00000320755 TMEM238LA0A1B0GVL6 79 aa12.78□□□□□ -0.36
COL9A1-201ENST00000320755 A6NJY4 79 aa12.78□□□□□ -0.36
COL9A1-201ENST00000320755 GAGE13Q4V321 117 aa12.78□□□□□ -0.36
COL9A1-201ENST00000320755 VCX2Q9H322 139 aa12.78□□□□□ -0.36
COL9A1-201ENST00000320755 FLNAP21333 2647 aaKnown RBP12.78□□□□□ -0.36
COL9A1-201ENST00000320755 RBMY1BA6NDE4 496 aaKnown RBP12.78□□□□□ -0.36
COL9A1-201ENST00000320755 RBMY1EA6NEQ0 496 aaKnown RBP12.78□□□□□ -0.36
COL9A1-201ENST00000320755 RBMY1DP0C7P1 496 aaKnown RBP12.78□□□□□ -0.36
COL9A1-201ENST00000320755 Q96MF0 132 aa12.78□□□□□ -0.36
COL9A1-201ENST00000320755 ZNF469Q96JG9 3925 aaPredicted RBP12.78□□□□□ -0.36
COL9A1-201ENST00000320755 LINC01619G3V211 115 aa12.77□□□□□ -0.36
COL9A1-201ENST00000320755 A0A1B0GWB2 263 aa12.77□□□□□ -0.37
COL9A1-201ENST00000320755 H3BMM0 161 aa12.77□□□□□ -0.37
COL9A1-201ENST00000320755 DYNLRB2Q8TF09 96 aa12.77□□□□□ -0.37
COL9A1-201ENST00000320755 DLX4Q92988 240 aaPredicted RBP12.77□□□□□ -0.37
COL9A1-201ENST00000320755 F8W1H4 67 aa12.76□□□□□ -0.37
COL9A1-201ENST00000320755 PSMB2P49721 201 aa12.76□□□□□ -0.37
COL9A1-201ENST00000320755 SPAG8Q99932 426 aaPredicted RBP12.76□□□□□ -0.37
COL9A1-201ENST00000320755 ADARB2-AS1A8MUL3 147 aa12.76□□□□□ -0.37
COL9A1-201ENST00000320755 RHOHQ15669 191 aa12.76□□□□□ -0.37
COL9A1-201ENST00000320755 NSUN5P1Q3KNT7 163 aa12.76□□□□□ -0.37
COL9A1-201ENST00000320755 LINC01587Q99440 93 aa12.76□□□□□ -0.37
COL9A1-201ENST00000320755 IGHV3OR16-12A0A075B7B8 117 aa12.75□□□□□ -0.37
COL9A1-201ENST00000320755 SPXQ9BT56 116 aa12.75□□□□□ -0.37
COL9A1-201ENST00000320755 TNFRSF18Q9Y5U5 241 aa12.75□□□□□ -0.37
COL9A1-201ENST00000320755 A0A1W2PRX2 142 aa12.75□□□□□ -0.37
COL9A1-201ENST00000320755 Q6ZSN1 163 aa12.75□□□□□ -0.37
COL9A1-201ENST00000320755 SPANXB1Q9NS25 103 aaPredicted RBP12.75□□□□□ -0.37
COL9A1-201ENST00000320755 IGHV3-38A0A0C4DH36 116 aa12.75□□□□□ -0.37
COL9A1-201ENST00000320755 TSPAN13O95857 204 aa12.75□□□□□ -0.37
COL9A1-201ENST00000320755 FSHBP01225 129 aa12.75□□□□□ -0.37
COL9A1-201ENST00000320755 IGLV4-3A0A075B6K6 122 aa12.74□□□□□ -0.37
COL9A1-201ENST00000320755 CD28P10747 220 aa12.74□□□□□ -0.37
COL9A1-201ENST00000320755 ZNF418Q8TF45 676 aaPredicted RBP12.74□□□□□ -0.37
COL9A1-201ENST00000320755 H7C2G1 150 aa12.73□□□□□ -0.37
COL9A1-201ENST00000320755 UBE2D1P51668 147 aa12.73□□□□□ -0.37
COL9A1-201ENST00000320755 TRAV2A0A0B4J234 112 aa12.73□□□□□ -0.37
COL9A1-201ENST00000320755 INSL3P51460 131 aa12.73□□□□□ -0.37
COL9A1-201ENST00000320755 DEFB113Q30KQ7 82 aa12.73□□□□□ -0.37
COL9A1-201ENST00000320755 ZNF22P17026 224 aaPredicted RBP12.73□□□□□ -0.37
COL9A1-201ENST00000320755 SLC25A29Q8N8R3 303 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms