RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 C9orf153Q5TBE3 101 aa3.56□□□□□ -1.84
PTPN13-201ENST00000316707 C5orf56Q8N8D9 126 aa3.56□□□□□ -1.84
PTPN13-201ENST00000316707 LINC01548A6NM66 108 aa3.56□□□□□ -1.84
PTPN13-201ENST00000316707 DYSFO75923 2080 aa3.56□□□□□ -1.84
PTPN13-201ENST00000316707 PEMTQ9UBM1 199 aa3.56□□□□□ -1.84
PTPN13-201ENST00000316707 RNASE1P07998 156 aaKnown RBP3.56□□□□□ -1.84
PTPN13-201ENST00000316707 DEFB123Q8N688 67 aa3.56□□□□□ -1.84
PTPN13-201ENST00000316707 VSIG2Q96IQ7 327 aa3.56□□□□□ -1.84
PTPN13-201ENST00000316707 LITAFQ99732 161 aa3.56□□□□□ -1.84
PTPN13-201ENST00000316707 A0A1B0GX51 115 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 J3KT08 172 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 OXLD1Q5BKU9 147 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 APC2O95996 2303 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 TMEM89A2RUT3 159 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 ATOX1O00244 68 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 NDUFA7O95182 113 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 IGHG2P01859 326 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 LRRC75A-AS1Q8N1F1 130 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 CEP192Q8TEP8 1941 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 TANC2Q9HCD6 1990 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 TRAV8-3A0A0A6YYJ7 113 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 TMEM258P61165 79 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 C19orf54Q5BKX5 351 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 GAGE2AQ6NT46 116 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 C3orf22Q8N5N4 141 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 FAM236AA0A1B0GUQ0 79 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 FAM236BA0A1B0GV22 79 aa3.55□□□□□ -1.84
PTPN13-201ENST00000316707 RPS28P62857 69 aaKnown RBP3.55□□□□□ -1.84
PTPN13-201ENST00000316707 C11orf71Q6IPW1 123 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 SHISA2Q6UWI4 295 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 UNQ9165/PRO28630Q6UXU0 137 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 RNF152Q8N8N0 203 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 Q8NA96 180 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 OR13C6PQ8NH95 151 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 TRAV12-3A0A0B4J271 114 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 F6UB75 175 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 EIF4EBP3O60516 100 aaPredicted RBP3.54□□□□□ -1.84
PTPN13-201ENST00000316707 ZFP36P26651 326 aaKnown RBP3.54□□□□□ -1.84
PTPN13-201ENST00000316707 HERVK_113P63121 156 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 AGRNO00468 2067 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 NDUFA1O15239 70 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 S100A7L2Q5SY68 101 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 MED13LQ71F56 2210 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 JPT2Q9H910 190 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 IGLV5-45A0A087WSX0 123 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 CCL21O00585 134 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 SPRY2O43597 315 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 DCANP1Q8TF63 244 aa3.54□□□□□ -1.84
PTPN13-201ENST00000316707 DSCAML1Q8TD84 2053 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 LINC01587Q99440 93 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 IGHV3-64A0A075B6Q5 118 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 H0YGX0 51 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 COX7CP15954 63 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 TMEM219Q86XT9 240 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 OPRPNQ99935 248 aaPredicted RBP3.53□□□□□ -1.84
PTPN13-201ENST00000316707 LINC00308Q8TCZ7 52 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 LY6HO94772 140 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 IGHV3-11P01762 117 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 CRYGAP11844 174 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 LMO4P61968 165 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 WFDC11Q8NEX6 87 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 NBASA2RRP1 2371 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 KHDC1LQ5JSQ8 128 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 SDIM1Q6ZPB5 146 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 ZFHX3Q15911 3703 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 TRAV13-2A0A0B4J235 113 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 K7EQG2 157 aa3.53□□□□□ -1.84
PTPN13-201ENST00000316707 IGKV3-7A0A075B6H7 116 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 UCNP55089 124 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 CLEC2BQ92478 149 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 NRGNQ92686 78 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 SPTAN1Q13813 2472 aaKnown RBP3.52□□□□□ -1.85
PTPN13-201ENST00000316707 ELANEP08246 267 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 MRPL55Q7Z7F7 128 aaKnown RBP3.52□□□□□ -1.85
PTPN13-201ENST00000316707 BRCA2P51587 3418 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 BAALC-AS2P0C853 105 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 ADAMTSL4-AS1Q5T5F5 129 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 DUX3Q96PT4 197 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 PCNX1Q96RV3 2341 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 IGLV5-39A0A0G2JS06 123 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 ADARB2-AS1A8MUL3 147 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 IGLV1-40P01703 118 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 HOXD3P31249 432 aaPredicted RBP3.52□□□□□ -1.85
PTPN13-201ENST00000316707 HIST2H2BCQ6DN03 193 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 HIST2H2BDQ6DRA6 164 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 COL27A1Q8IZC6 1860 aaPredicted RBP3.52□□□□□ -1.85
PTPN13-201ENST00000316707 IGHV3-53P01767 116 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 C5orf38Q86SI9 138 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 MYO15AQ9UKN7 3530 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 GHRHP01286 108 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 BDP1A6H8Y1 2624 aa3.52□□□□□ -1.85
PTPN13-201ENST00000316707 CEP295Q9C0D2 2601 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 C5orf47Q569G3 176 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 PRIMA1Q86XR5 153 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 SPTBN2O15020 2390 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 Q9H8V8 135 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 VPREB3Q9UKI3 123 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 CRPP02741 224 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 ATP5EP2Q5VTU8 51 aa3.51□□□□□ -1.85
PTPN13-201ENST00000316707 CHCHD5Q9BSY4 110 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms