RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 SIVA1O15304 175 aa14.12□□□□□ -0.15
HOXC4-201ENST00000303406 STPG4Q8N801 248 aa14.12□□□□□ -0.15
HOXC4-201ENST00000303406 LINC00482Q8N8I6 264 aa14.12□□□□□ -0.15
HOXC4-201ENST00000303406 TMEM141Q96I45 108 aa14.12□□□□□ -0.15
HOXC4-201ENST00000303406 TIMM17AQ99595 171 aa14.12□□□□□ -0.15
HOXC4-201ENST00000303406 XCL2Q9UBD3 114 aa14.12□□□□□ -0.15
HOXC4-201ENST00000303406 RS1O15537 224 aa14.11□□□□□ -0.15
HOXC4-201ENST00000303406 MRPL35Q9NZE8 188 aaKnown RBP14.11□□□□□ -0.15
HOXC4-201ENST00000303406 NEGR1Q7Z3B1 354 aa14.1□□□□□ -0.15
HOXC4-201ENST00000303406 BAALCQ8WXS3 180 aa14.1□□□□□ -0.15
HOXC4-201ENST00000303406 TMEM208Q9BTX3 173 aa14.1□□□□□ -0.15
HOXC4-201ENST00000303406 I3L3M4 83 aa14.1□□□□□ -0.15
HOXC4-201ENST00000303406 CRLF1O75462 422 aa14.1□□□□□ -0.15
HOXC4-201ENST00000303406 PF4P02776 101 aa14.1□□□□□ -0.15
HOXC4-201ENST00000303406 BATFQ16520 125 aa14.1□□□□□ -0.15
HOXC4-201ENST00000303406 CFAP126Q5VTH2 177 aa14.1□□□□□ -0.15
HOXC4-201ENST00000303406 C12orf54Q6X4T0 127 aa14.1□□□□□ -0.15
HOXC4-201ENST00000303406 CHTOPQ9Y3Y2 248 aaKnown RBP14.1□□□□□ -0.15
HOXC4-201ENST00000303406 IGIPA6NJ69 53 aa14.09□□□□□ -0.15
HOXC4-201ENST00000303406 C2orf91Q6ZV80 131 aa14.09□□□□□ -0.15
HOXC4-201ENST00000303406 C1QTNF4Q9BXJ3 329 aa14.09□□□□□ -0.15
HOXC4-201ENST00000303406 TP53TG1Q9Y2A0 90 aa14.09□□□□□ -0.15
HOXC4-201ENST00000303406 DNAJC30Q96LL9 226 aa14.08□□□□□ -0.16
HOXC4-201ENST00000303406 TSHBP01222 138 aa14.07□□□□□ -0.16
HOXC4-201ENST00000303406 HINT1P49773 126 aaPredicted RBP14.07□□□□□ -0.16
HOXC4-201ENST00000303406 INSL3P51460 131 aa14.07□□□□□ -0.16
HOXC4-201ENST00000303406 ZC2HC1BQ5TFG8 222 aa14.07□□□□□ -0.16
HOXC4-201ENST00000303406 RNASE8Q8TDE3 154 aaKnown RBP14.07□□□□□ -0.16
HOXC4-201ENST00000303406 TMEM263Q8WUH6 116 aaKnown RBP14.07□□□□□ -0.16
HOXC4-201ENST00000303406 IGHV3-53P01767 116 aa14.06□□□□□ -0.16
HOXC4-201ENST00000303406 PRM2P04554 102 aa14.06□□□□□ -0.16
HOXC4-201ENST00000303406 TP73-AS1Q9UF72 201 aa14.06□□□□□ -0.16
HOXC4-201ENST00000303406 MTORP42345 2549 aa14.06□□□□□ -0.16
HOXC4-201ENST00000303406 GIG44P09565 113 aaPredicted RBP14.05□□□□□ -0.16
HOXC4-201ENST00000303406 PAPPA-AS1Q5QFB9 102 aa14.05□□□□□ -0.16
HOXC4-201ENST00000303406 HECTD1Q9ULT8 2610 aa14.05□□□□□ -0.16
HOXC4-201ENST00000303406 PRSS29PA6NIE9 313 aa14.05□□□□□ -0.16
HOXC4-201ENST00000303406 AZU1P20160 251 aa14.05□□□□□ -0.16
HOXC4-201ENST00000303406 NMUP48645 174 aa14.05□□□□□ -0.16
HOXC4-201ENST00000303406 MRPL16Q9NX20 251 aaKnown RBP14.05□□□□□ -0.16
HOXC4-201ENST00000303406 CUBNO60494 3623 aa14.04□□□□□ -0.16
HOXC4-201ENST00000303406 PMVKQ15126 192 aa14.04□□□□□ -0.16
HOXC4-201ENST00000303406 MPV17L2Q567V2 206 aa14.04□□□□□ -0.16
HOXC4-201ENST00000303406 BVES-AS1Q5T3Y7 98 aa14.04□□□□□ -0.16
HOXC4-201ENST00000303406 C20orf203Q8NBC4 194 aa14.04□□□□□ -0.16
HOXC4-201ENST00000303406 TNFRSF18Q9Y5U5 241 aa14.04□□□□□ -0.16
HOXC4-201ENST00000303406 DAZ2Q13117 558 aaKnown RBP14.03□□□□□ -0.16
HOXC4-201ENST00000303406 HIGD1BQ9P298 99 aa14.03□□□□□ -0.16
HOXC4-201ENST00000303406 NPSP0C0P6 89 aa14.02□□□□□ -0.16
HOXC4-201ENST00000303406 P0DMU3 169 aa14.02□□□□□ -0.16
HOXC4-201ENST00000303406 FAM231AP0DMU4 169 aa14.02□□□□□ -0.16
HOXC4-201ENST00000303406 FAM231CP0DMU5 169 aa14.02□□□□□ -0.16
HOXC4-201ENST00000303406 GTSCR1Q86UQ5 136 aa14.02□□□□□ -0.16
HOXC4-201ENST00000303406 PCP2Q8IVA1 136 aa14.02□□□□□ -0.16
HOXC4-201ENST00000303406 C16orf74Q96GX8 76 aa14.02□□□□□ -0.16
HOXC4-201ENST00000303406 IGKV2D-26A0A0A0MRZ7 120 aa14.01□□□□□ -0.17
HOXC4-201ENST00000303406 RPL39P62891 51 aaKnown RBP14.01□□□□□ -0.17
HOXC4-201ENST00000303406 TMEM97Q5BJF2 176 aa14.01□□□□□ -0.17
HOXC4-201ENST00000303406 C9orf66Q5T8R8 295 aa14.01□□□□□ -0.17
HOXC4-201ENST00000303406 CSNK1G2-AS1Q8NCQ2 148 aa14.01□□□□□ -0.17
HOXC4-201ENST00000303406 NACAE9PAV3 2078 aa14□□□□□ -0.17
HOXC4-201ENST00000303406 IGHV3OR16-12A0A075B7B8 117 aa14□□□□□ -0.17
HOXC4-201ENST00000303406 IGHV3-73A0A0B4J1V6 119 aa14□□□□□ -0.17
HOXC4-201ENST00000303406 CIDEAO60543 219 aa14□□□□□ -0.17
HOXC4-201ENST00000303406 PYGO1Q9Y3Y4 419 aa14□□□□□ -0.17
HOXC4-201ENST00000303406 NF1P21359 2839 aa14□□□□□ -0.17
HOXC4-201ENST00000303406 HSD52Q0P140 79 aa14□□□□□ -0.17
HOXC4-201ENST00000303406 WFDC10AQ9H1F0 79 aa14□□□□□ -0.17
HOXC4-201ENST00000303406 CST9LQ9H4G1 147 aa14□□□□□ -0.17
HOXC4-201ENST00000303406 WNK1Q9H4A3 2382 aa13.99□□□□□ -0.17
HOXC4-201ENST00000303406 TRAV4A0A0B4J268 109 aa13.99□□□□□ -0.17
HOXC4-201ENST00000303406 CRYBA4P53673 196 aa13.99□□□□□ -0.17
HOXC4-201ENST00000303406 Q6ZSN1 163 aa13.99□□□□□ -0.17
HOXC4-201ENST00000303406 OR4C5Q8NGB2 326 aa13.99□□□□□ -0.17
HOXC4-201ENST00000303406 CITED1Q99966 193 aa13.99□□□□□ -0.17
HOXC4-201ENST00000303406 OTOGQ6ZRI0 2925 aa13.98□□□□□ -0.17
HOXC4-201ENST00000303406 TRGV1A0A0A0MS02 117 aa13.98□□□□□ -0.17
HOXC4-201ENST00000303406 RPL35AP18077 110 aaKnown RBP13.98□□□□□ -0.17
HOXC4-201ENST00000303406 SEC11AP67812 179 aa13.98□□□□□ -0.17
HOXC4-201ENST00000303406 OVOL2Q9BRP0 275 aa13.98□□□□□ -0.17
HOXC4-201ENST00000303406 IGLV4-69A0A075B6H9 119 aa13.97□□□□□ -0.17
HOXC4-201ENST00000303406 TRBV10-1A0A0K0K1A3 114 aa13.97□□□□□ -0.17
HOXC4-201ENST00000303406 E9PLD3 99 aa13.97□□□□□ -0.17
HOXC4-201ENST00000303406 ZMAT5Q9UDW3 170 aaKnown RBP13.96□□□□□ -0.17
HOXC4-201ENST00000303406 PLAC8L1A1L4L8 177 aa13.95□□□□□ -0.18
HOXC4-201ENST00000303406 TCTAP57738 103 aa13.95□□□□□ -0.18
HOXC4-201ENST00000303406 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.95□□□□□ -0.18
HOXC4-201ENST00000303406 GAGE1Q13065 139 aa13.95□□□□□ -0.18
HOXC4-201ENST00000303406 RRN3P1Q2M238 152 aa13.95□□□□□ -0.18
HOXC4-201ENST00000303406 NFE4Q86UQ8 179 aa13.95□□□□□ -0.18
HOXC4-201ENST00000303406 OR11H2Q8NH07 326 aa13.95□□□□□ -0.18
HOXC4-201ENST00000303406 HERVK_113P61574 105 aa13.94□□□□□ -0.18
HOXC4-201ENST00000303406 Q6ZTI0 123 aa13.94□□□□□ -0.18
HOXC4-201ENST00000303406 ORAOV1Q8WV07 137 aa13.94□□□□□ -0.18
HOXC4-201ENST00000303406 IGLV4-3A0A075B6K6 122 aa13.93□□□□□ -0.18
HOXC4-201ENST00000303406 C11orf86A6NJI1 115 aa13.93□□□□□ -0.18
HOXC4-201ENST00000303406 CHCHD7Q9BUK0 85 aa13.93□□□□□ -0.18
HOXC4-201ENST00000303406 SPANXA1Q9NS26 97 aa13.93□□□□□ -0.18
HOXC4-201ENST00000303406 COX11Q9Y6N1 276 aa13.93□□□□□ -0.18
HOXC4-201ENST00000303406 SETXQ7Z333 2677 aaKnown RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms