RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 TMEM208Q9BTX3 173 aa12.05□□□□□ -0.48
CCDC40-201ENST00000269318 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-201ENST00000269318 STPG4Q8N801 248 aa12.05□□□□□ -0.48
CCDC40-201ENST00000269318 SCGB3A1Q96QR1 104 aa12.05□□□□□ -0.48
CCDC40-201ENST00000269318 CFAP126Q5VTH2 177 aa12.04□□□□□ -0.48
CCDC40-201ENST00000269318 SLC25A34Q6PIV7 304 aa12.04□□□□□ -0.48
CCDC40-201ENST00000269318 KIR2DL4Q99706 377 aa12.04□□□□□ -0.48
CCDC40-201ENST00000269318 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.03□□□□□ -0.48
CCDC40-201ENST00000269318 RNASE8Q8TDE3 154 aaKnown RBP12.03□□□□□ -0.48
CCDC40-201ENST00000269318 MRPL16Q9NX20 251 aaKnown RBP12.03□□□□□ -0.48
CCDC40-201ENST00000269318 HHLA3Q9XRX5 114 aa12.03□□□□□ -0.48
CCDC40-201ENST00000269318 IGHV3OR16-12A0A075B7B8 117 aa12.03□□□□□ -0.48
CCDC40-201ENST00000269318 A0A087WX48 190 aa12.03□□□□□ -0.48
CCDC40-201ENST00000269318 IGHV3-73A0A0B4J1V6 119 aa12.03□□□□□ -0.48
CCDC40-201ENST00000269318 TRAV12-1A0A0B4J245 112 aa12.03□□□□□ -0.48
CCDC40-201ENST00000269318 COX8AP10176 69 aa12.03□□□□□ -0.48
CCDC40-201ENST00000269318 H7C1H1 209 aa12.02□□□□□ -0.49
CCDC40-201ENST00000269318 RIPPLY3P57055 190 aa12.02□□□□□ -0.49
CCDC40-201ENST00000269318 ERASQ7Z444 233 aa12.02□□□□□ -0.49
CCDC40-201ENST00000269318 SPATA3Q8NHX4 192 aa12.02□□□□□ -0.49
CCDC40-201ENST00000269318 CITED1Q99966 193 aa12.02□□□□□ -0.49
CCDC40-201ENST00000269318 MRPL35Q9NZE8 188 aaKnown RBP12.02□□□□□ -0.49
CCDC40-201ENST00000269318 CYSLTR1Q9Y271 337 aa12.02□□□□□ -0.49
CCDC40-201ENST00000269318 IGKCP01834 107 aa12.01□□□□□ -0.49
CCDC40-201ENST00000269318 G0S2P27469 103 aa12.01□□□□□ -0.49
CCDC40-201ENST00000269318 NEXN-AS1Q8NBZ9 246 aa12.01□□□□□ -0.49
CCDC40-201ENST00000269318 DEFB104AQ8WTQ1 72 aa12.01□□□□□ -0.49
CCDC40-201ENST00000269318 NACAE9PAV3 2078 aa12.01□□□□□ -0.49
CCDC40-201ENST00000269318 RS1O15537 224 aa12.01□□□□□ -0.49
CCDC40-201ENST00000269318 DPM2O94777 84 aa12.01□□□□□ -0.49
CCDC40-201ENST00000269318 FGF6P10767 208 aa12.01□□□□□ -0.49
CCDC40-201ENST00000269318 RPL35AP18077 110 aaKnown RBP12.01□□□□□ -0.49
CCDC40-201ENST00000269318 Q6ZSN1 163 aa12.01□□□□□ -0.49
CCDC40-201ENST00000269318 JMJD1CQ15652 2540 aa12□□□□□ -0.49
CCDC40-201ENST00000269318 LINC01549A6NIU2 74 aa12□□□□□ -0.49
CCDC40-201ENST00000269318 RHODO00212 210 aa12□□□□□ -0.49
CCDC40-201ENST00000269318 TSHBP01222 138 aa12□□□□□ -0.49
CCDC40-201ENST00000269318 LURAP1LQ8IV03 231 aa12□□□□□ -0.49
CCDC40-201ENST00000269318 CSNK1G2-AS1Q8NCQ2 148 aa12□□□□□ -0.49
CCDC40-201ENST00000269318 TMEM263Q8WUH6 116 aaKnown RBP12□□□□□ -0.49
CCDC40-201ENST00000269318 BAALCQ8WXS3 180 aa12□□□□□ -0.49
CCDC40-201ENST00000269318 TP53TG1Q9Y2A0 90 aa12□□□□□ -0.49
CCDC40-201ENST00000269318 IGIPA6NJ69 53 aa11.99□□□□□ -0.49
CCDC40-201ENST00000269318 P0DMU3 169 aa11.99□□□□□ -0.49
CCDC40-201ENST00000269318 FAM231AP0DMU4 169 aa11.99□□□□□ -0.49
CCDC40-201ENST00000269318 FAM231CP0DMU5 169 aa11.99□□□□□ -0.49
CCDC40-201ENST00000269318 A0A1B0GV90 55 aa11.99□□□□□ -0.49
CCDC40-201ENST00000269318 I3L3M4 83 aa11.99□□□□□ -0.49
CCDC40-201ENST00000269318 INSL3P51460 131 aa11.99□□□□□ -0.49
CCDC40-201ENST00000269318 RHOHQ15669 191 aa11.99□□□□□ -0.49
CCDC40-201ENST00000269318 F8VRH5 84 aa11.98□□□□□ -0.49
CCDC40-201ENST00000269318 RPL39P62891 51 aaKnown RBP11.98□□□□□ -0.49
CCDC40-201ENST00000269318 C1QTNF4Q9BXJ3 329 aa11.98□□□□□ -0.49
CCDC40-201ENST00000269318 IGHV3-53P01767 116 aa11.98□□□□□ -0.49
CCDC40-201ENST00000269318 Q9UF83 564 aa11.98□□□□□ -0.49
CCDC40-201ENST00000269318 TENM1Q9UKZ4 2725 aa11.97□□□□□ -0.49
CCDC40-201ENST00000269318 PLAC8L1A1L4L8 177 aa11.97□□□□□ -0.49
CCDC40-201ENST00000269318 PLNP26678 52 aa11.97□□□□□ -0.49
CCDC40-201ENST00000269318 TCTAP57738 103 aa11.97□□□□□ -0.49
CCDC40-201ENST00000269318 BATFQ16520 125 aa11.97□□□□□ -0.49
CCDC40-201ENST00000269318 C9orf66Q5T8R8 295 aa11.97□□□□□ -0.49
CCDC40-201ENST00000269318 C2orf91Q6ZV80 131 aa11.97□□□□□ -0.49
CCDC40-201ENST00000269318 BOD1L2Q8IYS8 172 aa11.97□□□□□ -0.49
CCDC40-201ENST00000269318 TIMM17AQ99595 171 aa11.97□□□□□ -0.49
CCDC40-201ENST00000269318 VWFP04275 2813 aa11.96□□□□□ -0.49
CCDC40-201ENST00000269318 CHTOPQ9Y3Y2 248 aaKnown RBP11.96□□□□□ -0.49
CCDC40-201ENST00000269318 TRGV1A0A0A0MS02 117 aa11.96□□□□□ -0.5
CCDC40-201ENST00000269318 PRSS29PA6NIE9 313 aa11.96□□□□□ -0.5
CCDC40-201ENST00000269318 DAZ2Q13117 558 aaKnown RBP11.96□□□□□ -0.5
CCDC40-201ENST00000269318 ZC2HC1BQ5TFG8 222 aa11.96□□□□□ -0.5
CCDC40-201ENST00000269318 TMEM141Q96I45 108 aa11.96□□□□□ -0.5
CCDC40-201ENST00000269318 IGKV2D-26A0A0A0MRZ7 120 aa11.95□□□□□ -0.5
CCDC40-201ENST00000269318 DLEU1O43261 78 aa11.95□□□□□ -0.5
CCDC40-201ENST00000269318 TNFRSF18Q9Y5U5 241 aa11.95□□□□□ -0.5
CCDC40-201ENST00000269318 HINT1P49773 126 aaPredicted RBP11.94□□□□□ -0.5
CCDC40-201ENST00000269318 Q6ZTI0 123 aa11.94□□□□□ -0.5
CCDC40-201ENST00000269318 PCP2Q8IVA1 136 aa11.94□□□□□ -0.5
CCDC40-201ENST00000269318 C20orf203Q8NBC4 194 aa11.94□□□□□ -0.5
CCDC40-201ENST00000269318 C16orf74Q96GX8 76 aa11.94□□□□□ -0.5
CCDC40-201ENST00000269318 NMUP48645 174 aa11.94□□□□□ -0.5
CCDC40-201ENST00000269318 GTSCR1Q86UQ5 136 aa11.94□□□□□ -0.5
CCDC40-201ENST00000269318 OR4C5Q8NGB2 326 aa11.93□□□□□ -0.5
CCDC40-201ENST00000269318 DNAJC30Q96LL9 226 aa11.93□□□□□ -0.5
CCDC40-201ENST00000269318 COL5A1-AS1Q5SY13 56 aa11.92□□□□□ -0.5
CCDC40-201ENST00000269318 ZNF479Q96JC4 524 aa11.92□□□□□ -0.5
CCDC40-201ENST00000269318 NOP10Q9NPE3 64 aaKnown RBP11.92□□□□□ -0.5
CCDC40-201ENST00000269318 F8P00451 2351 aa11.92□□□□□ -0.5
CCDC40-201ENST00000269318 PMVKQ15126 192 aa11.92□□□□□ -0.5
CCDC40-201ENST00000269318 MPV17L2Q567V2 206 aa11.92□□□□□ -0.5
CCDC40-201ENST00000269318 TRAV4A0A0B4J268 109 aa11.91□□□□□ -0.5
CCDC40-201ENST00000269318 RRN3P1Q2M238 152 aa11.91□□□□□ -0.5
CCDC40-201ENST00000269318 OVOL2Q9BRP0 275 aa11.91□□□□□ -0.5
CCDC40-201ENST00000269318 CST9LQ9H4G1 147 aa11.91□□□□□ -0.5
CCDC40-201ENST00000269318 IGLV4-69A0A075B6H9 119 aa11.9□□□□□ -0.5
CCDC40-201ENST00000269318 SIVA1O15304 175 aa11.9□□□□□ -0.5
CCDC40-201ENST00000269318 BVES-AS1Q5T3Y7 98 aa11.89□□□□□ -0.51
CCDC40-201ENST00000269318 WFDC9Q8NEX5 89 aa11.89□□□□□ -0.51
CCDC40-201ENST00000269318 TEP1Q99973 2627 aaKnown RBP11.89□□□□□ -0.51
CCDC40-201ENST00000269318 C12orf54Q6X4T0 127 aa11.88□□□□□ -0.51
CCDC40-201ENST00000269318 TTTY13Q9BZ97 58 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms