RNA–Protein interactions for RNA: ENST00000263666.8

PDZRN3-201, Transcript of PDZ domain containing ring finger 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDZRN3, Length 4,248 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-201ENST00000263666 CFHR3Q02985 330 aa12.2□□□□□ -0.46
PDZRN3-201ENST00000263666 COX6CP09669 75 aa12.2□□□□□ -0.46
PDZRN3-201ENST00000263666 RPL13AP40429 203 aaKnown RBP12.2□□□□□ -0.46
PDZRN3-201ENST00000263666 DAND5Q8N907 189 aa12.2□□□□□ -0.46
PDZRN3-201ENST00000263666 BBC3Q96PG8 261 aaPredicted RBP12.2□□□□□ -0.46
PDZRN3-201ENST00000263666 HIGD1BQ9P298 99 aa12.2□□□□□ -0.46
PDZRN3-201ENST00000263666 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.19□□□□□ -0.46
PDZRN3-201ENST00000263666 IGKV2-29A2NJV5 120 aaPredicted RBP12.19□□□□□ -0.46
PDZRN3-201ENST00000263666 CKS1BP61024 79 aa12.19□□□□□ -0.46
PDZRN3-201ENST00000263666 NSUN5P1Q3KNT7 163 aa12.19□□□□□ -0.46
PDZRN3-201ENST00000263666 SPAG8Q99932 426 aaPredicted RBP12.19□□□□□ -0.46
PDZRN3-201ENST00000263666 APRG1Q8IVJ8 170 aa12.19□□□□□ -0.46
PDZRN3-201ENST00000263666 TOMM6Q96B49 74 aa12.19□□□□□ -0.46
PDZRN3-201ENST00000263666 FLNCQ14315 2725 aa12.19□□□□□ -0.46
PDZRN3-201ENST00000263666 COL27A1Q8IZC6 1860 aaPredicted RBP12.19□□□□□ -0.46
PDZRN3-201ENST00000263666 J3QLI3 93 aa12.19□□□□□ -0.46
PDZRN3-201ENST00000263666 TIMM21Q9BVV7 248 aa12.19□□□□□ -0.46
PDZRN3-201ENST00000263666 TRGV1A0A0A0MS02 117 aa12.18□□□□□ -0.46
PDZRN3-201ENST00000263666 A4D1N5 150 aa12.18□□□□□ -0.46
PDZRN3-201ENST00000263666 SLURP1P55000 103 aa12.18□□□□□ -0.46
PDZRN3-201ENST00000263666 MRPL53Q96EL3 112 aaKnown RBP12.18□□□□□ -0.46
PDZRN3-201ENST00000263666 TRAV8-3A0A0A6YYJ7 113 aa12.17□□□□□ -0.46
PDZRN3-201ENST00000263666 PROK1P58294 105 aa12.17□□□□□ -0.46
PDZRN3-201ENST00000263666 RNASE3P12724 160 aaKnown RBP12.16□□□□□ -0.46
PDZRN3-201ENST00000263666 HOXD3P31249 432 aaPredicted RBP12.16□□□□□ -0.46
PDZRN3-201ENST00000263666 PRO1854Q9UHT4 67 aa12.16□□□□□ -0.46
PDZRN3-201ENST00000263666 UFSP1Q6NVU6 142 aa12.16□□□□□ -0.46
PDZRN3-201ENST00000263666 TRPT1Q86TN4 253 aaKnown RBP12.16□□□□□ -0.46
PDZRN3-201ENST00000263666 C11orf68Q9H3H3 251 aaKnown RBP12.16□□□□□ -0.46
PDZRN3-201ENST00000263666 E9PLD3 99 aa12.16□□□□□ -0.46
PDZRN3-201ENST00000263666 TRGV11A0A075B6L2 103 aa12.15□□□□□ -0.46
PDZRN3-201ENST00000263666 NEXN-AS1Q8NBZ9 246 aa12.15□□□□□ -0.46
PDZRN3-201ENST00000263666 DCHS2Q6V1P9 2916 aa12.15□□□□□ -0.46
PDZRN3-201ENST00000263666 LENEPQ9Y5L5 61 aa12.15□□□□□ -0.46
PDZRN3-201ENST00000263666 PEMTQ9UBM1 199 aa12.15□□□□□ -0.46
PDZRN3-201ENST00000263666 IGHV4OR15-8A0A075B7B6 117 aa12.14□□□□□ -0.47
PDZRN3-201ENST00000263666 A0A087WW49 117 aa12.14□□□□□ -0.47
PDZRN3-201ENST00000263666 SNCGO76070 127 aa12.14□□□□□ -0.47
PDZRN3-201ENST00000263666 IGHG2P01859 326 aa12.14□□□□□ -0.47
PDZRN3-201ENST00000263666 TAL2Q16559 108 aa12.14□□□□□ -0.47
PDZRN3-201ENST00000263666 C19orf54Q5BKX5 351 aa12.14□□□□□ -0.47
PDZRN3-201ENST00000263666 TM2D2Q9BX73 214 aa12.14□□□□□ -0.47
PDZRN3-201ENST00000263666 I3L3M4 83 aa12.14□□□□□ -0.47
PDZRN3-201ENST00000263666 UBE2L6O14933 153 aa12.14□□□□□ -0.47
PDZRN3-201ENST00000263666 TRGV2A0A075B6R0 118 aa12.13□□□□□ -0.47
PDZRN3-201ENST00000263666 A8MZ25 164 aa12.13□□□□□ -0.47
PDZRN3-201ENST00000263666 AVPP01185 164 aa12.13□□□□□ -0.47
PDZRN3-201ENST00000263666 TTC32Q5I0X7 151 aa12.13□□□□□ -0.47
PDZRN3-201ENST00000263666 MUSTN1Q8IVN3 82 aa12.13□□□□□ -0.47
PDZRN3-201ENST00000263666 CNFNQ9BYD5 112 aa12.13□□□□□ -0.47
PDZRN3-201ENST00000263666 RPL35AP18077 110 aaKnown RBP12.12□□□□□ -0.47
PDZRN3-201ENST00000263666 STHQ8IWL8 128 aa12.12□□□□□ -0.47
PDZRN3-201ENST00000263666 WFDC11Q8NEX6 87 aa12.12□□□□□ -0.47
PDZRN3-201ENST00000263666 NTN5Q8WTR8 489 aaPredicted RBP12.12□□□□□ -0.47
PDZRN3-201ENST00000263666 NDUFA12Q9UI09 145 aa12.12□□□□□ -0.47
PDZRN3-201ENST00000263666 M0R2P5 195 aa12.12□□□□□ -0.47
PDZRN3-201ENST00000263666 TSPAN13O95857 204 aa12.12□□□□□ -0.47
PDZRN3-201ENST00000263666 CIRBPQ14011 172 aaKnown RBP12.12□□□□□ -0.47
PDZRN3-201ENST00000263666 SPANXB1Q9NS25 103 aaPredicted RBP12.12□□□□□ -0.47
PDZRN3-201ENST00000263666 ITPR1Q14643 2758 aa12.12□□□□□ -0.47
PDZRN3-201ENST00000263666 SPENQ96T58 3664 aaKnown RBP12.11□□□□□ -0.47
PDZRN3-201ENST00000263666 TRAV12-1A0A0B4J245 112 aa12.11□□□□□ -0.47
PDZRN3-201ENST00000263666 VPREB3Q9UKI3 123 aa12.11□□□□□ -0.47
PDZRN3-201ENST00000263666 RNASE1P07998 156 aaKnown RBP12.11□□□□□ -0.47
PDZRN3-201ENST00000263666 TMEM141Q96I45 108 aa12.11□□□□□ -0.47
PDZRN3-201ENST00000263666 ANAPC13Q9BS18 74 aa12.11□□□□□ -0.47
PDZRN3-201ENST00000263666 SLC25A20O43772 301 aa12.11□□□□□ -0.47
PDZRN3-201ENST00000263666 ZNRF2Q8NHG8 242 aa12.11□□□□□ -0.47
PDZRN3-201ENST00000263666 IGLV2-18A0A075B6J9 118 aa12.1□□□□□ -0.47
PDZRN3-201ENST00000263666 SRSF2Q01130 221 aaKnown RBP12.1□□□□□ -0.47
PDZRN3-201ENST00000263666 C2orf82Q6UX34 121 aa12.1□□□□□ -0.47
PDZRN3-201ENST00000263666 OR13C6PQ8NH95 151 aa12.1□□□□□ -0.47
PDZRN3-201ENST00000263666 GAGE12JA6NER3 117 aa12.1□□□□□ -0.47
PDZRN3-201ENST00000263666 GAGE4Q13068 117 aa12.1□□□□□ -0.47
PDZRN3-201ENST00000263666 GAGE5Q13069 117 aa12.1□□□□□ -0.47
PDZRN3-201ENST00000263666 ZNF580Q9UK33 172 aa12.1□□□□□ -0.47
PDZRN3-201ENST00000263666 TCL1BO95988 128 aa12.09□□□□□ -0.47
PDZRN3-201ENST00000263666 KRTAP10-9P60411 292 aa12.09□□□□□ -0.47
PDZRN3-201ENST00000263666 A6NDX4 124 aa12.08□□□□□ -0.48
PDZRN3-201ENST00000263666 TMEM262E9PQX1 116 aa12.08□□□□□ -0.48
PDZRN3-201ENST00000263666 PPDPFLQ8WWR9 84 aa12.08□□□□□ -0.48
PDZRN3-201ENST00000263666 C18orf65Q6ZTR6 163 aa12.07□□□□□ -0.48
PDZRN3-201ENST00000263666 GPHB5Q86YW7 130 aa12.07□□□□□ -0.48
PDZRN3-201ENST00000263666 CFC1BP0CG36 223 aa12.07□□□□□ -0.48
PDZRN3-201ENST00000263666 CFC1P0CG37 223 aa12.07□□□□□ -0.48
PDZRN3-201ENST00000263666 ZNF415Q09FC8 603 aa12.07□□□□□ -0.48
PDZRN3-201ENST00000263666 FOXI1Q12951 378 aa12.07□□□□□ -0.48
PDZRN3-201ENST00000263666 NDUFA11Q86Y39 141 aa12.07□□□□□ -0.48
PDZRN3-201ENST00000263666 A0A0J9YX75 114 aa12.07□□□□□ -0.48
PDZRN3-201ENST00000263666 A0A0J9YY99 117 aa12.07□□□□□ -0.48
PDZRN3-201ENST00000263666 C10orf126Q8N4M7 172 aa12.07□□□□□ -0.48
PDZRN3-201ENST00000263666 ANKRD29Q8N6D5 301 aa12.07□□□□□ -0.48
PDZRN3-201ENST00000263666 TRBV7-3A0A075B6L6 115 aa12.06□□□□□ -0.48
PDZRN3-201ENST00000263666 TRBV20-1A0A075B6N2 111 aa12.06□□□□□ -0.48
PDZRN3-201ENST00000263666 PRIMA1Q86XR5 153 aa12.06□□□□□ -0.48
PDZRN3-201ENST00000263666 ZANQ9Y493 2812 aa12.06□□□□□ -0.48
PDZRN3-201ENST00000263666 PIFOQ8TCI5 191 aa12.06□□□□□ -0.48
PDZRN3-201ENST00000263666 C1QTNF4Q9BXJ3 329 aa12.06□□□□□ -0.48
PDZRN3-201ENST00000263666 ZMAT4Q9H898 229 aa12.05□□□□□ -0.48
PDZRN3-201ENST00000263666 TRAV8-4A0A0B4J246 113 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms