RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CRIP1P50238 77 aa10.77□□□□□ -0.69
CLN3-264ENST00000637985 LGALSLQ3ZCW2 172 aaPredicted RBP10.77□□□□□ -0.69
CLN3-264ENST00000637985 OR10J3Q5JRS4 329 aa10.77□□□□□ -0.69
CLN3-264ENST00000637985 FAM162BQ5T6X4 162 aa10.77□□□□□ -0.69
CLN3-264ENST00000637985 LELP1Q5T871 98 aa10.77□□□□□ -0.69
CLN3-264ENST00000637985 CST9LP1Q5W188 147 aa10.77□□□□□ -0.69
CLN3-264ENST00000637985 GTSF1LQ9H1H1 148 aa10.77□□□□□ -0.69
CLN3-264ENST00000637985 IBA57-AS1B1ANH7 110 aa10.76□□□□□ -0.69
CLN3-264ENST00000637985 SH2D1AO60880 128 aa10.76□□□□□ -0.69
CLN3-264ENST00000637985 ZNF674Q2M3X9 581 aa10.76□□□□□ -0.69
CLN3-264ENST00000637985 ATP6V0E2Q8NHE4 81 aa10.76□□□□□ -0.69
CLN3-264ENST00000637985 MBD3L1Q8WWY6 194 aa10.76□□□□□ -0.69
CLN3-264ENST00000637985 CHAC1Q9BUX1 264 aa10.76□□□□□ -0.69
CLN3-264ENST00000637985 KANTRA0A1W2PQU2 76 aa10.75□□□□□ -0.69
CLN3-264ENST00000637985 H3BVH4 76 aa10.75□□□□□ -0.69
CLN3-264ENST00000637985 LTAP01374 205 aa10.75□□□□□ -0.69
CLN3-264ENST00000637985 WFDC2Q14508 124 aa10.75□□□□□ -0.69
CLN3-264ENST00000637985 OR11H4Q8NGC9 324 aa10.75□□□□□ -0.69
CLN3-264ENST00000637985 M0R036 132 aa10.74□□□□□ -0.69
CLN3-264ENST00000637985 RHODO00212 210 aa10.74□□□□□ -0.69
CLN3-264ENST00000637985 PAGE4O60829 102 aa10.74□□□□□ -0.69
CLN3-264ENST00000637985 S100A9P06702 114 aaKnown RBP10.74□□□□□ -0.69
CLN3-264ENST00000637985 ARMS2P0C7Q2 107 aa10.74□□□□□ -0.69
CLN3-264ENST00000637985 AKR1C3P42330 323 aa10.74□□□□□ -0.69
CLN3-264ENST00000637985 HNRNPA3P51991 378 aaKnown RBP10.74□□□□□ -0.69
CLN3-264ENST00000637985 EIF5AP63241 154 aaKnown RBP10.74□□□□□ -0.69
CLN3-264ENST00000637985 LINC01559Q495D7 138 aa10.74□□□□□ -0.69
CLN3-264ENST00000637985 DMRTA1Q5VZB9 504 aa10.74□□□□□ -0.69
CLN3-264ENST00000637985 UFSP1Q6NVU6 142 aa10.74□□□□□ -0.69
CLN3-264ENST00000637985 SFT2D1Q8WV19 159 aa10.74□□□□□ -0.69
CLN3-264ENST00000637985 ZNF471Q9BX82 626 aaPredicted RBP10.74□□□□□ -0.69
CLN3-264ENST00000637985 BCL2L11O43521 198 aa10.73□□□□□ -0.69
CLN3-264ENST00000637985 FAM213BQ8TBF2 198 aa10.73□□□□□ -0.69
CLN3-264ENST00000637985 CIRBP-AS1Q8TBR5 109 aa10.73□□□□□ -0.69
CLN3-264ENST00000637985 Q9HAA7 133 aa10.73□□□□□ -0.69
CLN3-264ENST00000637985 PHLDA3Q9Y5J5 127 aa10.73□□□□□ -0.69
CLN3-264ENST00000637985 LINC00694P0DN24 101 aa10.72□□□□□ -0.69
CLN3-264ENST00000637985 TPT1P13693 172 aaKnown RBP10.72□□□□□ -0.69
CLN3-264ENST00000637985 LINC01620Q4KN68 170 aa10.72□□□□□ -0.69
CLN3-264ENST00000637985 DAZAP1Q96EP5 407 aaKnown RBP10.72□□□□□ -0.69
CLN3-264ENST00000637985 SAMD10Q9BYL1 202 aa10.72□□□□□ -0.69
CLN3-264ENST00000637985 JPT2Q9H910 190 aa10.72□□□□□ -0.69
CLN3-264ENST00000637985 GRIFINA4D1Z8 144 aa10.71□□□□□ -0.69
CLN3-264ENST00000637985 GAGE12JA6NER3 117 aa10.71□□□□□ -0.69
CLN3-264ENST00000637985 PFDN1O60925 122 aa10.71□□□□□ -0.69
CLN3-264ENST00000637985 IGLV2-8P01709 118 aa10.71□□□□□ -0.69
CLN3-264ENST00000637985 GAGE1Q13065 139 aa10.71□□□□□ -0.69
CLN3-264ENST00000637985 GAGE4Q13068 117 aa10.71□□□□□ -0.69
CLN3-264ENST00000637985 GAGE5Q13069 117 aa10.71□□□□□ -0.69
CLN3-264ENST00000637985 LAGE3Q14657 143 aa10.71□□□□□ -0.69
CLN3-264ENST00000637985 GAGE13Q4V321 117 aa10.71□□□□□ -0.69
CLN3-264ENST00000637985 SFRP2Q96HF1 295 aa10.71□□□□□ -0.69
CLN3-264ENST00000637985 A0A087WWC5 75 aa10.7□□□□□ -0.7
CLN3-264ENST00000637985 IGHV3-30P01768 117 aa10.7□□□□□ -0.7
CLN3-264ENST00000637985 IGHV3-33P01772 117 aa10.7□□□□□ -0.7
CLN3-264ENST00000637985 H2AFB1P0C5Y9 115 aa10.7□□□□□ -0.7
CLN3-264ENST00000637985 IGHV3-30-3P0DP02 117 aa10.7□□□□□ -0.7
CLN3-264ENST00000637985 IGHV3-30-5P0DP03 117 aa10.7□□□□□ -0.7
CLN3-264ENST00000637985 ZFP82Q8N141 532 aa10.7□□□□□ -0.7
CLN3-264ENST00000637985 C14orf178Q8N769 122 aaPredicted RBP10.7□□□□□ -0.7
CLN3-264ENST00000637985 TMSB15BA0A087X1C1 80 aa10.69□□□□□ -0.7
CLN3-264ENST00000637985 TMUB2Q71RG4 321 aa10.69□□□□□ -0.7
CLN3-264ENST00000637985 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.68□□□□□ -0.7
CLN3-264ENST00000637985 A0A1B0GV50 99 aa10.68□□□□□ -0.7
CLN3-264ENST00000637985 SCO2A0A1W2PP80 73 aa10.68□□□□□ -0.7
CLN3-264ENST00000637985 M0R381 172 aa10.68□□□□□ -0.7
CLN3-264ENST00000637985 CXCL1P09341 107 aa10.68□□□□□ -0.7
CLN3-264ENST00000637985 FAM74A4Q5TZK3 123 aa10.68□□□□□ -0.7
CLN3-264ENST00000637985 MLST8Q9BVC4 326 aa10.68□□□□□ -0.7
CLN3-264ENST00000637985 Q9UF83 564 aa10.68□□□□□ -0.7
CLN3-264ENST00000637985 RPL37AP61513 92 aaKnown RBP10.67□□□□□ -0.7
CLN3-264ENST00000637985 BAGE2Q86Y30 109 aa10.67□□□□□ -0.7
CLN3-264ENST00000637985 TM2D2Q9BX73 214 aa10.67□□□□□ -0.7
CLN3-264ENST00000637985 A0A087WWL8 130 aa10.66□□□□□ -0.7
CLN3-264ENST00000637985 TRBV10-1A0A0K0K1A3 114 aa10.66□□□□□ -0.7
CLN3-264ENST00000637985 LECT2O14960 151 aa10.66□□□□□ -0.7
CLN3-264ENST00000637985 RAB5CP51148 216 aa10.66□□□□□ -0.7
CLN3-264ENST00000637985 TOR2AQ5JU69 321 aa10.66□□□□□ -0.7
CLN3-264ENST00000637985 MANBALQ9NQG1 85 aa10.66□□□□□ -0.7
CLN3-264ENST00000637985 TRAV8-3A0A0A6YYJ7 113 aa10.65□□□□□ -0.7
CLN3-264ENST00000637985 EIF5AL1Q6IS14 154 aaKnown RBP10.65□□□□□ -0.7
CLN3-264ENST00000637985 KRTAP9-2Q9BYQ4 174 aa10.65□□□□□ -0.7
CLN3-264ENST00000637985 TRAV1-1A0A0B4J248 108 aa10.64□□□□□ -0.71
CLN3-264ENST00000637985 TEX46H3BTG2 121 aa10.63□□□□□ -0.71
CLN3-264ENST00000637985 SNAI2O43623 268 aa10.63□□□□□ -0.71
CLN3-264ENST00000637985 OR5AL1P0C617 328 aa10.63□□□□□ -0.71
CLN3-264ENST00000637985 RPL35P42766 123 aaKnown RBP10.63□□□□□ -0.71
CLN3-264ENST00000637985 RAB4BP61018 213 aa10.63□□□□□ -0.71
CLN3-264ENST00000637985 RPL36AP83881 106 aaKnown RBP10.63□□□□□ -0.71
CLN3-264ENST00000637985 RPL19P84098 196 aaKnown RBP10.63□□□□□ -0.71
CLN3-264ENST00000637985 RPL36ALQ969Q0 106 aaKnown RBP10.63□□□□□ -0.71
CLN3-264ENST00000637985 SSBP4Q9BWG4 385 aaPredicted RBP10.63□□□□□ -0.71
CLN3-264ENST00000637985 GNG13Q9P2W3 67 aa10.63□□□□□ -0.71
CLN3-264ENST00000637985 URGCP-MRPS24S4R325 110 aa10.63□□□□□ -0.71
CLN3-264ENST00000637985 TRBV7-3A0A075B6L6 115 aa10.62□□□□□ -0.71
CLN3-264ENST00000637985 RBFOX3A6NFN3 312 aa10.62□□□□□ -0.71
CLN3-264ENST00000637985 CCL20P78556 96 aa10.62□□□□□ -0.71
CLN3-264ENST00000637985 DAZ4Q86SG3 579 aaKnown RBP10.62□□□□□ -0.71
CLN3-264ENST00000637985 NIT1Q86X76 327 aa10.62□□□□□ -0.71
CLN3-264ENST00000637985 Q8N3U1 123 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 171.5 ms