RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TRBV10-1A0A0K0K1A3 114 aa12.6□□□□□ -0.39
CLN3-259ENST00000637551 SRP19P09132 144 aaKnown RBP12.6□□□□□ -0.39
CLN3-259ENST00000637551 PEA15Q15121 130 aa12.6□□□□□ -0.39
CLN3-259ENST00000637551 FER1L6-AS1Q8NA97 138 aa12.6□□□□□ -0.39
CLN3-259ENST00000637551 OCC1Q8TAD7 63 aa12.6□□□□□ -0.39
CLN3-259ENST00000637551 CNFNQ9BYD5 112 aa12.6□□□□□ -0.39
CLN3-259ENST00000637551 Q9H8V8 135 aa12.6□□□□□ -0.39
CLN3-259ENST00000637551 NBDYA0A0U1RRE5 68 aa12.59□□□□□ -0.39
CLN3-259ENST00000637551 M0R381 172 aa12.59□□□□□ -0.39
CLN3-259ENST00000637551 CRYGDP07320 174 aa12.59□□□□□ -0.39
CLN3-259ENST00000637551 SOHLH1Q5JUK2 328 aa12.59□□□□□ -0.39
CLN3-259ENST00000637551 SPANXN1Q5VSR9 72 aa12.59□□□□□ -0.39
CLN3-259ENST00000637551 LYPD5Q6UWN5 251 aa12.59□□□□□ -0.39
CLN3-259ENST00000637551 OR10AG1Q8NH19 301 aa12.59□□□□□ -0.39
CLN3-259ENST00000637551 AP1S3Q96PC3 154 aa12.59□□□□□ -0.39
CLN3-259ENST00000637551 RPP21Q9H633 154 aaKnown RBP12.59□□□□□ -0.39
CLN3-259ENST00000637551 K7EN84 100 aa12.58□□□□□ -0.4
CLN3-259ENST00000637551 LINC00694P0DN24 101 aa12.58□□□□□ -0.4
CLN3-259ENST00000637551 CTRLP40313 264 aa12.58□□□□□ -0.4
CLN3-259ENST00000637551 NUDT10Q8NFP7 164 aa12.58□□□□□ -0.4
CLN3-259ENST00000637551 NUDT11Q96G61 164 aa12.58□□□□□ -0.4
CLN3-259ENST00000637551 FAM231BA6NCW3 169 aa12.57□□□□□ -0.4
CLN3-259ENST00000637551 ZNF727A8MUV8 499 aa12.57□□□□□ -0.4
CLN3-259ENST00000637551 RAB4BP61018 213 aa12.57□□□□□ -0.4
CLN3-259ENST00000637551 RAB14P61106 215 aa12.57□□□□□ -0.4
CLN3-259ENST00000637551 LINC01551Q86U37 167 aa12.57□□□□□ -0.4
CLN3-259ENST00000637551 SIVA1O15304 175 aa12.56□□□□□ -0.4
CLN3-259ENST00000637551 A8MWL6 223 aa12.55□□□□□ -0.4
CLN3-259ENST00000637551 OR10G8Q8NGN5 311 aa12.55□□□□□ -0.4
CLN3-259ENST00000637551 SAMD10Q9BYL1 202 aa12.55□□□□□ -0.4
CLN3-259ENST00000637551 GFRA4Q9GZZ7 299 aa12.55□□□□□ -0.4
CLN3-259ENST00000637551 A0A087WWC5 75 aa12.54□□□□□ -0.4
CLN3-259ENST00000637551 TRGC1P0CF51 173 aa12.54□□□□□ -0.4
CLN3-259ENST00000637551 FOXA3P55318 350 aaPredicted RBP12.54□□□□□ -0.4
CLN3-259ENST00000637551 FAM74A4Q5TZK3 123 aa12.54□□□□□ -0.4
CLN3-259ENST00000637551 GTSF1LQ9H1H1 148 aa12.54□□□□□ -0.4
CLN3-259ENST00000637551 JPT2Q9H910 190 aa12.54□□□□□ -0.4
CLN3-259ENST00000637551 OSTCQ9NRP0 149 aa12.54□□□□□ -0.4
CLN3-259ENST00000637551 IGHV3-73A0A0B4J1V6 119 aa12.53□□□□□ -0.4
CLN3-259ENST00000637551 SMIM17P0DL12 118 aa12.53□□□□□ -0.4
CLN3-259ENST00000637551 C1orf134Q5TEV5 83 aa12.53□□□□□ -0.4
CLN3-259ENST00000637551 ATP6V0E2Q8NHE4 81 aa12.53□□□□□ -0.4
CLN3-259ENST00000637551 RNASE7Q9H1E1 156 aaKnown RBP12.53□□□□□ -0.4
CLN3-259ENST00000637551 IGLV2-18A0A075B6J9 118 aa12.52□□□□□ -0.41
CLN3-259ENST00000637551 TRAV9-2A0A087WT02 112 aa12.52□□□□□ -0.41
CLN3-259ENST00000637551 GATCO43716 136 aaKnown RBP12.52□□□□□ -0.41
CLN3-259ENST00000637551 DNAH10OSP0CZ25 163 aa12.52□□□□□ -0.41
CLN3-259ENST00000637551 CEBPGP53567 150 aa12.52□□□□□ -0.41
CLN3-259ENST00000637551 ERVFC1-1P60608 527 aa12.52□□□□□ -0.41
CLN3-259ENST00000637551 TMEM241Q24JQ0 296 aa12.52□□□□□ -0.41
CLN3-259ENST00000637551 CLLU1Q5K131 121 aa12.52□□□□□ -0.41
CLN3-259ENST00000637551 LELP1Q5T871 98 aa12.52□□□□□ -0.41
CLN3-259ENST00000637551 C10orf126Q8N4M7 172 aa12.52□□□□□ -0.41
CLN3-259ENST00000637551 NAT8Q9UHE5 227 aa12.52□□□□□ -0.41
CLN3-259ENST00000637551 KIF25-AS1Q9Y6Z4 181 aa12.52□□□□□ -0.41
CLN3-259ENST00000637551 A0A087WWL8 130 aa12.51□□□□□ -0.41
CLN3-259ENST00000637551 LOC100131303A0A0U1RQF7 123 aa12.51□□□□□ -0.41
CLN3-259ENST00000637551 H7C1H1 209 aa12.51□□□□□ -0.41
CLN3-259ENST00000637551 RPL36AP83881 106 aaKnown RBP12.51□□□□□ -0.41
CLN3-259ENST00000637551 Q6ZSN1 163 aa12.51□□□□□ -0.41
CLN3-259ENST00000637551 C15orf54Q8N8G6 183 aa12.51□□□□□ -0.41
CLN3-259ENST00000637551 RPL36ALQ969Q0 106 aaKnown RBP12.51□□□□□ -0.41
CLN3-259ENST00000637551 ABCA13Q86UQ4 5058 aa12.51□□□□□ -0.41
CLN3-259ENST00000637551 TRBV7-3A0A075B6L6 115 aa12.5□□□□□ -0.41
CLN3-259ENST00000637551 TRAV8-6A0A0B4J262 113 aa12.5□□□□□ -0.41
CLN3-259ENST00000637551 GZMBP10144 247 aa12.5□□□□□ -0.41
CLN3-259ENST00000637551 LYZL1Q6UWQ5 148 aa12.5□□□□□ -0.41
CLN3-259ENST00000637551 C6orf223Q8N319 242 aa12.5□□□□□ -0.41
CLN3-259ENST00000637551 ZNF56Q15929 161 aa12.49□□□□□ -0.41
CLN3-259ENST00000637551 C14orf178Q8N769 122 aaPredicted RBP12.49□□□□□ -0.41
CLN3-259ENST00000637551 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.49□□□□□ -0.41
CLN3-259ENST00000637551 TSKUQ8WUA8 353 aa12.49□□□□□ -0.41
CLN3-259ENST00000637551 FRZBQ92765 325 aa12.49□□□□□ -0.41
CLN3-259ENST00000637551 TPPP3Q9BW30 176 aa12.49□□□□□ -0.41
CLN3-259ENST00000637551 M0R2N4 97 aa12.48□□□□□ -0.41
CLN3-259ENST00000637551 RTL8CO15255 209 aa12.48□□□□□ -0.41
CLN3-259ENST00000637551 EVI2AP22794 236 aa12.48□□□□□ -0.41
CLN3-259ENST00000637551 LINC00315P59091 139 aa12.48□□□□□ -0.41
CLN3-259ENST00000637551 LINC01556Q5JQF7 62 aa12.48□□□□□ -0.41
CLN3-259ENST00000637551 ISOC2Q96AB3 205 aa12.48□□□□□ -0.41
CLN3-259ENST00000637551 DPH3P1Q9H4G8 78 aa12.48□□□□□ -0.41
CLN3-259ENST00000637551 NTF3P20783 257 aa12.47□□□□□ -0.41
CLN3-259ENST00000637551 UBE2D3P61077 147 aa12.47□□□□□ -0.41
CLN3-259ENST00000637551 UBE2D2P62837 147 aa12.47□□□□□ -0.41
CLN3-259ENST00000637551 TMEM97Q5BJF2 176 aa12.47□□□□□ -0.41
CLN3-259ENST00000637551 GTSF1Q8WW33 167 aa12.47□□□□□ -0.41
CLN3-259ENST00000637551 DNAJC30Q96LL9 226 aa12.47□□□□□ -0.41
CLN3-259ENST00000637551 IGHV3-38A0A0C4DH36 116 aa12.46□□□□□ -0.41
CLN3-259ENST00000637551 C9JQL5 133 aa12.46□□□□□ -0.41
CLN3-259ENST00000637551 RPL23P62829 140 aaKnown RBP12.46□□□□□ -0.41
CLN3-259ENST00000637551 SMIM15Q7Z3B0 74 aa12.46□□□□□ -0.41
CLN3-259ENST00000637551 NFE4Q86UQ8 179 aa12.46□□□□□ -0.41
CLN3-259ENST00000637551 BORCS7Q96B45 105 aa12.46□□□□□ -0.41
CLN3-259ENST00000637551 GAGE12JA6NER3 117 aa12.45□□□□□ -0.42
CLN3-259ENST00000637551 SRSF3P84103 164 aaKnown RBP12.45□□□□□ -0.42
CLN3-259ENST00000637551 PNRC1Q12796 327 aaPredicted RBP12.45□□□□□ -0.42
CLN3-259ENST00000637551 GAGE1Q13065 139 aa12.45□□□□□ -0.42
CLN3-259ENST00000637551 GAGE4Q13068 117 aa12.45□□□□□ -0.42
CLN3-259ENST00000637551 GAGE5Q13069 117 aa12.45□□□□□ -0.42
CLN3-259ENST00000637551 GAGE13Q4V321 117 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms