RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 LAMTOR2Q9Y2Q5 125 aa12.23□□□□□ -0.45
CLN3-252ENST00000636907 GOLT1BQ9Y3E0 138 aa12.23□□□□□ -0.45
CLN3-252ENST00000636907 IFI27P40305 119 aaPredicted RBP12.22□□□□□ -0.45
CLN3-252ENST00000636907 LINC00518Q8N0U6 118 aa12.22□□□□□ -0.45
CLN3-252ENST00000636907 NRACQ8N912 160 aa12.22□□□□□ -0.45
CLN3-252ENST00000636907 PRSS3P2Q8NHM4 247 aa12.22□□□□□ -0.45
CLN3-252ENST00000636907 STAB1Q9NY15 2570 aa12.22□□□□□ -0.45
CLN3-252ENST00000636907 CSTL1Q9H114 145 aa12.22□□□□□ -0.45
CLN3-252ENST00000636907 M0R2P5 195 aa12.21□□□□□ -0.45
CLN3-252ENST00000636907 MAP1LC3AQ9H492 121 aa12.21□□□□□ -0.45
CLN3-252ENST00000636907 CRYGDP07320 174 aa12.2□□□□□ -0.46
CLN3-252ENST00000636907 SMIM6P0DI80 62 aa12.2□□□□□ -0.46
CLN3-252ENST00000636907 PMCHL1Q16048 86 aa12.2□□□□□ -0.46
CLN3-252ENST00000636907 OXLD1Q5BKU9 147 aa12.2□□□□□ -0.46
CLN3-252ENST00000636907 PYY3Q5JQD4 70 aa12.2□□□□□ -0.46
CLN3-252ENST00000636907 FAM74A4Q5TZK3 123 aa12.2□□□□□ -0.46
CLN3-252ENST00000636907 Q6ZWC4 215 aa12.2□□□□□ -0.46
CLN3-252ENST00000636907 FA2HQ7L5A8 372 aa12.2□□□□□ -0.46
CLN3-252ENST00000636907 RNASE8Q8TDE3 154 aaKnown RBP12.2□□□□□ -0.46
CLN3-252ENST00000636907 SPXQ9BT56 116 aa12.2□□□□□ -0.46
CLN3-252ENST00000636907 IGHV1-24A0A0C4DH33 117 aa12.19□□□□□ -0.46
CLN3-252ENST00000636907 IL17DQ8TAD2 202 aa12.19□□□□□ -0.46
CLN3-252ENST00000636907 RASL10AQ92737 203 aa12.19□□□□□ -0.46
CLN3-252ENST00000636907 PTH2Q96A98 100 aa12.19□□□□□ -0.46
CLN3-252ENST00000636907 AP5S1Q9NUS5 200 aa12.19□□□□□ -0.46
CLN3-252ENST00000636907 SUMO4Q6EEV6 95 aa12.19□□□□□ -0.46
CLN3-252ENST00000636907 ZNF705AQ6ZN79 300 aaPredicted RBP12.19□□□□□ -0.46
CLN3-252ENST00000636907 TMEM263Q8WUH6 116 aaKnown RBP12.19□□□□□ -0.46
CLN3-252ENST00000636907 RPL39LQ96EH5 51 aaKnown RBP12.19□□□□□ -0.46
CLN3-252ENST00000636907 C12orf57Q99622 126 aa12.19□□□□□ -0.46
CLN3-252ENST00000636907 PIK3CD-AS1Q5SR53 167 aa12.18□□□□□ -0.46
CLN3-252ENST00000636907 MRPL16Q9NX20 251 aaKnown RBP12.18□□□□□ -0.46
CLN3-252ENST00000636907 F5H697 171 aa12.17□□□□□ -0.46
CLN3-252ENST00000636907 PRSS47A8MTI9 375 aa12.16□□□□□ -0.46
CLN3-252ENST00000636907 ZNF56Q15929 161 aa12.16□□□□□ -0.46
CLN3-252ENST00000636907 CMYA5Q8N3K9 4069 aa12.16□□□□□ -0.46
CLN3-252ENST00000636907 IGLV2-18A0A075B6J9 118 aa12.16□□□□□ -0.46
CLN3-252ENST00000636907 A8MWV9 139 aa12.16□□□□□ -0.46
CLN3-252ENST00000636907 KRTAP10-11P60412 298 aa12.16□□□□□ -0.46
CLN3-252ENST00000636907 JOSD1Q15040 202 aaPredicted RBP12.16□□□□□ -0.46
CLN3-252ENST00000636907 NXT2Q9NPJ8 142 aaKnown RBP12.16□□□□□ -0.46
CLN3-252ENST00000636907 COL6A5A8TX70 2615 aa12.15□□□□□ -0.46
CLN3-252ENST00000636907 PLAC8L1A1L4L8 177 aa12.15□□□□□ -0.46
CLN3-252ENST00000636907 RRN3P1Q2M238 152 aa12.15□□□□□ -0.46
CLN3-252ENST00000636907 Q8N8P6 123 aa12.15□□□□□ -0.46
CLN3-252ENST00000636907 C16orf74Q96GX8 76 aa12.15□□□□□ -0.46
CLN3-252ENST00000636907 LINC01546A6NGU7 62 aa12.14□□□□□ -0.47
CLN3-252ENST00000636907 SUMO2P61956 95 aaKnown RBP12.14□□□□□ -0.47
CLN3-252ENST00000636907 CFAP126Q5VTH2 177 aa12.14□□□□□ -0.47
CLN3-252ENST00000636907 UFSP1Q6NVU6 142 aa12.14□□□□□ -0.47
CLN3-252ENST00000636907 CDPF1Q6NVV7 123 aa12.14□□□□□ -0.47
CLN3-252ENST00000636907 C20orf78Q9BR46 151 aa12.14□□□□□ -0.47
CLN3-252ENST00000636907 A0A096LNJ9 63 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 TRGV1A0A0A0MS02 117 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 IGHV3-73A0A0B4J1V6 119 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 KIR2DL5BA0A0G2JN68 375 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 KIR2DL5BA0A0G2JPC4 375 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 PPP1R17O96001 155 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 EGFEM1PQ0D2K5 195 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 KIR2DL5AQ8N109 375 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 KIR2DL5BQ8NHK3 375 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 M0QY20 66 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 RS1O15537 224 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 APOC4P55056 127 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 KRTDAPP60985 99 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 SMIM2Q9BVW6 85 aa12.13□□□□□ -0.47
CLN3-252ENST00000636907 LEPROTL1O95214 131 aa12.12□□□□□ -0.47
CLN3-252ENST00000636907 IGHV4-30-4P0DP06 118 aa12.12□□□□□ -0.47
CLN3-252ENST00000636907 DAZ2Q13117 558 aaKnown RBP12.12□□□□□ -0.47
CLN3-252ENST00000636907 LINC00173Q6ZV60 143 aa12.12□□□□□ -0.47
CLN3-252ENST00000636907 NDUFAF3Q9BU61 184 aa12.12□□□□□ -0.47
CLN3-252ENST00000636907 NOP10Q9NPE3 64 aaKnown RBP12.12□□□□□ -0.47
CLN3-252ENST00000636907 C3orf79P0CE67 100 aa12.11□□□□□ -0.47
CLN3-252ENST00000636907 Q6ZTI0 123 aa12.11□□□□□ -0.47
CLN3-252ENST00000636907 NACAE9PAV3 2078 aa12.1□□□□□ -0.47
CLN3-252ENST00000636907 SCGB1D1O95968 90 aa12.1□□□□□ -0.47
CLN3-252ENST00000636907 LGALS9BQ3B8N2 356 aa12.1□□□□□ -0.47
CLN3-252ENST00000636907 ST20Q9HBF5 79 aa12.1□□□□□ -0.47
CLN3-252ENST00000636907 NIT2Q9NQR4 276 aa12.1□□□□□ -0.47
CLN3-252ENST00000636907 X6R8D5 127 aa12.1□□□□□ -0.47
CLN3-252ENST00000636907 TCAPO15273 167 aa12.1□□□□□ -0.47
CLN3-252ENST00000636907 HBDP02042 147 aa12.1□□□□□ -0.47
CLN3-252ENST00000636907 OVOL2Q9BRP0 275 aa12.1□□□□□ -0.47
CLN3-252ENST00000636907 ANK2Q01484 3957 aa12.09□□□□□ -0.47
CLN3-252ENST00000636907 TRBV6-5A0A0K0K1A5 114 aa12.09□□□□□ -0.47
CLN3-252ENST00000636907 G3V4G9 280 aa12.09□□□□□ -0.47
CLN3-252ENST00000636907 RHODO00212 210 aa12.09□□□□□ -0.47
CLN3-252ENST00000636907 DEFB135Q30KP9 77 aa12.09□□□□□ -0.47
CLN3-252ENST00000636907 Q6ZSN1 163 aa12.09□□□□□ -0.47
CLN3-252ENST00000636907 TMEM70Q9BUB7 260 aa12.09□□□□□ -0.47
CLN3-252ENST00000636907 EDA2RQ9HAV5 297 aa12.09□□□□□ -0.47
CLN3-252ENST00000636907 POLR2KP53803 58 aaKnown RBP12.08□□□□□ -0.48
CLN3-252ENST00000636907 RPL32P62910 135 aaKnown RBP12.08□□□□□ -0.48
CLN3-252ENST00000636907 LAGE3Q14657 143 aa12.08□□□□□ -0.48
CLN3-252ENST00000636907 NEGR1Q7Z3B1 354 aa12.08□□□□□ -0.48
CLN3-252ENST00000636907 MDFIQ99750 246 aa12.08□□□□□ -0.48
CLN3-252ENST00000636907 PKD1L1Q8TDX9 2849 aa12.08□□□□□ -0.48
CLN3-252ENST00000636907 FCER1GP30273 86 aa12.07□□□□□ -0.48
CLN3-252ENST00000636907 ZFP2Q6ZN57 461 aa12.07□□□□□ -0.48
CLN3-252ENST00000636907 Q8N976 141 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms