RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 LY96Q9Y6Y9 160 aa13.31□□□□□ -0.28
UPF1-212ENST00000601689 A0A087WWL8 130 aa13.3□□□□□ -0.28
UPF1-212ENST00000601689 C19orf71A6NCJ1 209 aa13.3□□□□□ -0.28
UPF1-212ENST00000601689 F2Z2F3 143 aa13.3□□□□□ -0.28
UPF1-212ENST00000601689 CACNG7P62955 275 aa13.3□□□□□ -0.28
UPF1-212ENST00000601689 TEX261Q6UWH6 196 aa13.3□□□□□ -0.28
UPF1-212ENST00000601689 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.3□□□□□ -0.28
UPF1-212ENST00000601689 SAMD10Q9BYL1 202 aa13.3□□□□□ -0.28
UPF1-212ENST00000601689 OR10J3Q5JRS4 329 aa13.29□□□□□ -0.28
UPF1-212ENST00000601689 OR10AG1Q8NH19 301 aa13.29□□□□□ -0.28
UPF1-212ENST00000601689 GTSF1LQ9H1H1 148 aa13.29□□□□□ -0.28
UPF1-212ENST00000601689 TRBV20OR9-2A0A075B6H5 130 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 GAGE12JA6NER3 117 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 RTL8CO15255 209 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 RAB4BP61018 213 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 SSTP61278 116 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 GAGE1Q13065 139 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 GAGE4Q13068 117 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 GAGE5Q13069 117 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 ZNF56Q15929 161 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 GAGE13Q4V321 117 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 ZNF575Q86XF7 245 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 OCC1Q8TAD7 63 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 AP1S3Q96PC3 154 aa13.28□□□□□ -0.28
UPF1-212ENST00000601689 TRBV10-1A0A0K0K1A3 114 aa13.27□□□□□ -0.29
UPF1-212ENST00000601689 F5H697 171 aa13.27□□□□□ -0.29
UPF1-212ENST00000601689 CRYGDP07320 174 aa13.27□□□□□ -0.29
UPF1-212ENST00000601689 RPL36AP83881 106 aaKnown RBP13.27□□□□□ -0.29
UPF1-212ENST00000601689 UFSP1Q6NVU6 142 aa13.27□□□□□ -0.29
UPF1-212ENST00000601689 C10orf126Q8N4M7 172 aa13.27□□□□□ -0.29
UPF1-212ENST00000601689 NUDT10Q8NFP7 164 aa13.27□□□□□ -0.29
UPF1-212ENST00000601689 RPL36ALQ969Q0 106 aaKnown RBP13.27□□□□□ -0.29
UPF1-212ENST00000601689 NUDT11Q96G61 164 aa13.27□□□□□ -0.29
UPF1-212ENST00000601689 ZNF727A8MUV8 499 aa13.26□□□□□ -0.29
UPF1-212ENST00000601689 PEA15Q15121 130 aa13.26□□□□□ -0.29
UPF1-212ENST00000601689 LELP1Q5T871 98 aa13.26□□□□□ -0.29
UPF1-212ENST00000601689 SMIM7Q9BQ49 75 aa13.26□□□□□ -0.29
UPF1-212ENST00000601689 RPP21Q9H633 154 aaKnown RBP13.26□□□□□ -0.29
UPF1-212ENST00000601689 A0A087WWC5 75 aa13.25□□□□□ -0.29
UPF1-212ENST00000601689 MUC21A0A0G2JKD1 596 aa13.25□□□□□ -0.29
UPF1-212ENST00000601689 MUC21A0A140T8X8 626 aa13.25□□□□□ -0.29
UPF1-212ENST00000601689 TRGC1P0CF51 173 aa13.25□□□□□ -0.29
UPF1-212ENST00000601689 GZMBP10144 247 aa13.25□□□□□ -0.29
UPF1-212ENST00000601689 NFE4Q86UQ8 179 aa13.25□□□□□ -0.29
UPF1-212ENST00000601689 DNAH10Q8IVF4 4471 aa13.24□□□□□ -0.29
UPF1-212ENST00000601689 IGHV3-38A0A0C4DH36 116 aa13.24□□□□□ -0.29
UPF1-212ENST00000601689 ERVFC1-1P60608 527 aa13.24□□□□□ -0.29
UPF1-212ENST00000601689 Q6ZSN1 163 aa13.24□□□□□ -0.29
UPF1-212ENST00000601689 WFDC10BQ8IUB3 73 aa13.24□□□□□ -0.29
UPF1-212ENST00000601689 C14orf178Q8N769 122 aaPredicted RBP13.24□□□□□ -0.29
UPF1-212ENST00000601689 SMDT1Q9H4I9 107 aa13.24□□□□□ -0.29
UPF1-212ENST00000601689 FRAS1Q86XX4 4008 aa13.23□□□□□ -0.29
UPF1-212ENST00000601689 GATCO43716 136 aaKnown RBP13.23□□□□□ -0.29
UPF1-212ENST00000601689 IGLC6P0CF74 106 aa13.23□□□□□ -0.29
UPF1-212ENST00000601689 DNAH10OSP0CZ25 163 aa13.23□□□□□ -0.29
UPF1-212ENST00000601689 RAB14P61106 215 aa13.23□□□□□ -0.29
UPF1-212ENST00000601689 FAM74A3Q4VXF1 159 aa13.23□□□□□ -0.29
UPF1-212ENST00000601689 RNASE7Q9H1E1 156 aaKnown RBP13.23□□□□□ -0.29
UPF1-212ENST00000601689 TRBV7-3A0A075B6L6 115 aa13.22□□□□□ -0.29
UPF1-212ENST00000601689 A8MWL6 223 aa13.22□□□□□ -0.29
UPF1-212ENST00000601689 H7C1H1 209 aa13.22□□□□□ -0.29
UPF1-212ENST00000601689 WDR73Q6P4I2 378 aa13.22□□□□□ -0.29
UPF1-212ENST00000601689 SMIM15Q7Z3B0 74 aa13.22□□□□□ -0.29
UPF1-212ENST00000601689 BORCS7Q96B45 105 aa13.22□□□□□ -0.29
UPF1-212ENST00000601689 K7EN84 100 aa13.21□□□□□ -0.29
UPF1-212ENST00000601689 SRP19P09132 144 aaKnown RBP13.21□□□□□ -0.29
UPF1-212ENST00000601689 KCNIP4Q6PIL6 250 aa13.21□□□□□ -0.29
UPF1-212ENST00000601689 LYZL1Q6UWQ5 148 aa13.21□□□□□ -0.29
UPF1-212ENST00000601689 FAM231DQ6ZW35 169 aa13.21□□□□□ -0.29
UPF1-212ENST00000601689 URGCP-MRPS24S4R325 110 aa13.21□□□□□ -0.29
UPF1-212ENST00000601689 EPPK1P58107 5090 aaKnown RBP13.2□□□□□ -0.3
UPF1-212ENST00000601689 MGPP08493 103 aa13.2□□□□□ -0.3
UPF1-212ENST00000601689 C15orf54Q8N8G6 183 aa13.2□□□□□ -0.3
UPF1-212ENST00000601689 LINC00315P59091 139 aa13.19□□□□□ -0.3
UPF1-212ENST00000601689 TWIST1Q15672 202 aa13.19□□□□□ -0.3
UPF1-212ENST00000601689 LINC01556Q5JQF7 62 aa13.19□□□□□ -0.3
UPF1-212ENST00000601689 KRTAP1-5Q9BYS1 174 aa13.19□□□□□ -0.3
UPF1-212ENST00000601689 EREGO14944 169 aa13.18□□□□□ -0.3
UPF1-212ENST00000601689 LINC00694P0DN24 101 aa13.18□□□□□ -0.3
UPF1-212ENST00000601689 NTF3P20783 257 aa13.18□□□□□ -0.3
UPF1-212ENST00000601689 TMEM241Q24JQ0 296 aa13.18□□□□□ -0.3
UPF1-212ENST00000601689 TMEM97Q5BJF2 176 aa13.18□□□□□ -0.3
UPF1-212ENST00000601689 DPH3P1Q9H4G8 78 aa13.18□□□□□ -0.3
UPF1-212ENST00000601689 MSRB1Q9NZV6 116 aa13.18□□□□□ -0.3
UPF1-212ENST00000601689 CTRLP40313 264 aa13.17□□□□□ -0.3
UPF1-212ENST00000601689 CT83Q5H943 113 aa13.17□□□□□ -0.3
UPF1-212ENST00000601689 LINC01551Q86U37 167 aa13.17□□□□□ -0.3
UPF1-212ENST00000601689 OR10G8Q8NGN5 311 aa13.17□□□□□ -0.3
UPF1-212ENST00000601689 TNFRSF18Q9Y5U5 241 aa13.17□□□□□ -0.3
UPF1-212ENST00000601689 DNAH2Q9P225 4427 aa13.16□□□□□ -0.3
UPF1-212ENST00000601689 TNP2Q05952 138 aa13.16□□□□□ -0.3
UPF1-212ENST00000601689 DNAJC30Q96LL9 226 aa13.16□□□□□ -0.3
UPF1-212ENST00000601689 UBE2D3P61077 147 aa13.15□□□□□ -0.3
UPF1-212ENST00000601689 UBE2D2P62837 147 aa13.15□□□□□ -0.3
UPF1-212ENST00000601689 DAZ4Q86SG3 579 aaKnown RBP13.15□□□□□ -0.3
UPF1-212ENST00000601689 DAZ3Q9NR90 486 aaKnown RBP13.15□□□□□ -0.3
UPF1-212ENST00000601689 OSTCQ9NRP0 149 aa13.15□□□□□ -0.3
UPF1-212ENST00000601689 NAT8Q9UHE5 227 aa13.15□□□□□ -0.3
UPF1-212ENST00000601689 IGHV3-30P01768 117 aa13.14□□□□□ -0.31
UPF1-212ENST00000601689 IGHV3-33P01772 117 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms