RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 Q6ZTC4 211 aa6.21□□□□□ -1.42
TRIM28-214ENST00000600840 DAZAP1Q96EP5 407 aaKnown RBP6.21□□□□□ -1.42
TRIM28-214ENST00000600840 LINC01587Q99440 93 aa6.21□□□□□ -1.42
TRIM28-214ENST00000600840 MDFICQ9P1T7 246 aa6.21□□□□□ -1.42
TRIM28-214ENST00000600840 IGHV3OR16-12A0A075B7B8 117 aa6.2□□□□□ -1.42
TRIM28-214ENST00000600840 IGHV3-16A0A0C4DH30 117 aa6.2□□□□□ -1.42
TRIM28-214ENST00000600840 RNASE3P12724 160 aaKnown RBP6.2□□□□□ -1.42
TRIM28-214ENST00000600840 RRN3P1Q2M238 152 aa6.2□□□□□ -1.42
TRIM28-214ENST00000600840 C12orf74Q32Q52 190 aa6.2□□□□□ -1.42
TRIM28-214ENST00000600840 MUC21Q5SSG8 566 aa6.2□□□□□ -1.42
TRIM28-214ENST00000600840 ZNF493Q6ZR52 646 aa6.2□□□□□ -1.42
TRIM28-214ENST00000600840 TMEM136Q6ZRR5 245 aa6.2□□□□□ -1.42
TRIM28-214ENST00000600840 LINC00612Q8N6U2 182 aa6.2□□□□□ -1.42
TRIM28-214ENST00000600840 NUDT10Q8NFP7 164 aa6.2□□□□□ -1.42
TRIM28-214ENST00000600840 NUDT11Q96G61 164 aa6.2□□□□□ -1.42
TRIM28-214ENST00000600840 RPP21Q9H633 154 aaKnown RBP6.2□□□□□ -1.42
TRIM28-214ENST00000600840 P01737 135 aa6.19□□□□□ -1.42
TRIM28-214ENST00000600840 APCSP02743 223 aa6.19□□□□□ -1.42
TRIM28-214ENST00000600840 GZMBP10144 247 aa6.19□□□□□ -1.42
TRIM28-214ENST00000600840 DAZ2Q13117 558 aaKnown RBP6.19□□□□□ -1.42
TRIM28-214ENST00000600840 PDZD11Q5EBL8 140 aa6.19□□□□□ -1.42
TRIM28-214ENST00000600840 FAM159AQ6UWV7 190 aa6.19□□□□□ -1.42
TRIM28-214ENST00000600840 MRPL52Q86TS9 123 aaKnown RBP6.19□□□□□ -1.42
TRIM28-214ENST00000600840 BAGE3Q86Y29 109 aa6.19□□□□□ -1.42
TRIM28-214ENST00000600840 TMEM263Q8WUH6 116 aaKnown RBP6.19□□□□□ -1.42
TRIM28-214ENST00000600840 C9orf85Q96MD7 179 aa6.19□□□□□ -1.42
TRIM28-214ENST00000600840 SSBP4Q9BWG4 385 aaPredicted RBP6.19□□□□□ -1.42
TRIM28-214ENST00000600840 RNASE7Q9H1E1 156 aaKnown RBP6.19□□□□□ -1.42
TRIM28-214ENST00000600840 SCRT2Q9NQ03 307 aa6.19□□□□□ -1.42
TRIM28-214ENST00000600840 IGHV4-4A0A075B6R2 117 aa6.18□□□□□ -1.42
TRIM28-214ENST00000600840 SPINK4O60575 86 aa6.18□□□□□ -1.42
TRIM28-214ENST00000600840 TCL1AP56279 114 aa6.18□□□□□ -1.42
TRIM28-214ENST00000600840 HBBP68871 147 aa6.18□□□□□ -1.42
TRIM28-214ENST00000600840 C16orf74Q96GX8 76 aa6.18□□□□□ -1.42
TRIM28-214ENST00000600840 KCNS1Q96KK3 526 aa6.18□□□□□ -1.42
TRIM28-214ENST00000600840 TMEM208Q9BTX3 173 aa6.18□□□□□ -1.42
TRIM28-214ENST00000600840 DKK2Q9UBU2 259 aa6.18□□□□□ -1.42
TRIM28-214ENST00000600840 DNAH6Q9C0G6 4158 aa6.17□□□□□ -1.42
TRIM28-214ENST00000600840 TRAV10A0A0B4J240 114 aa6.17□□□□□ -1.42
TRIM28-214ENST00000600840 TMEM189A5PLL7 270 aa6.17□□□□□ -1.42
TRIM28-214ENST00000600840 CBY3A6NI87 242 aa6.17□□□□□ -1.42
TRIM28-214ENST00000600840 ORM1P02763 201 aa6.17□□□□□ -1.42
TRIM28-214ENST00000600840 IGLC6P0CF74 106 aa6.17□□□□□ -1.42
TRIM28-214ENST00000600840 HTN1P15515 57 aa6.17□□□□□ -1.42
TRIM28-214ENST00000600840 FOXA3P55318 350 aaPredicted RBP6.17□□□□□ -1.42
TRIM28-214ENST00000600840 RPS20P60866 119 aaKnown RBP6.17□□□□□ -1.42
TRIM28-214ENST00000600840 RAB4BP61018 213 aa6.17□□□□□ -1.42
TRIM28-214ENST00000600840 PRR27Q6MZM9 219 aa6.17□□□□□ -1.42
TRIM28-214ENST00000600840 PTH2Q96A98 100 aa6.17□□□□□ -1.42
TRIM28-214ENST00000600840 BORCS7Q96B45 105 aa6.17□□□□□ -1.42
TRIM28-214ENST00000600840 SAMD10Q9BYL1 202 aa6.17□□□□□ -1.42
TRIM28-214ENST00000600840 DNAH2Q9P225 4427 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 TRGV11A0A075B6L2 103 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 DEFB131BA0A096LNP1 70 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 A0A1B0GXF2 115 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 GRIFINA4D1Z8 144 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 HIGD1CA8MV81 97 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 LINC00587B1AMM8 73 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 SNAI2O43623 268 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 PMCHP20382 165 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 DDTP30046 118 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 FAM222AQ5U5X8 452 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 LINC00336Q6ZUF6 198 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 GATD1Q8NB37 220 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 NUP35Q8NFH5 326 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 RASL10AQ92737 203 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 C18orf15Q96N68 181 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 NAGKQ9UJ70 344 aa6.16□□□□□ -1.42
TRIM28-214ENST00000600840 TIMM8BQ9Y5J9 83 aaPredicted RBP6.16□□□□□ -1.42
TRIM28-214ENST00000600840 TMSB15BA0A087X1C1 80 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 PRSS29PA6NIE9 313 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 LYRM9A8MSI8 78 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 SERF1AO75920 110 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 ARMS2P0C7Q2 107 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 EMP1P54849 157 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 TCTAP57738 103 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 RIGQ13278 110 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 LGALS9BQ3B8N2 356 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 MRPL54Q6P161 138 aaKnown RBP6.15□□□□□ -1.42
TRIM28-214ENST00000600840 POM121L12Q8N7R1 296 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 OR2D3Q8NGH3 330 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 GTSF1Q8WW33 167 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 SPXQ9BT56 116 aa6.15□□□□□ -1.42
TRIM28-214ENST00000600840 NOP10Q9NPE3 64 aaKnown RBP6.15□□□□□ -1.42
TRIM28-214ENST00000600840 FAT2Q9NYQ8 4349 aa6.15□□□□□ -1.43
TRIM28-214ENST00000600840 DNAH17Q9UFH2 4485 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 C20orf202A1L168 122 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 NXPH4O95158 308 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 SCGB1D1O95968 90 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 OR5AL1P0C617 328 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 SPART-AS1P0CW21 52 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 SRIP30626 198 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 ASIPP42127 132 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 ZNF415Q09FC8 603 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 PMCHL1Q16048 86 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 PIK3CD-AS1Q5SR53 167 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 Q6ZTI0 123 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 CHCHD1Q96BP2 118 aaKnown RBP6.14□□□□□ -1.43
TRIM28-214ENST00000600840 NDUFAF3Q9BU61 184 aa6.14□□□□□ -1.43
TRIM28-214ENST00000600840 CNFNQ9BYD5 112 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms