RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 MUC21A0A0G2JKD1 596 aa13.38□□□□□ -0.27
SHKBP1-221ENST00000599833 MUC21A0A140T8X8 626 aa13.38□□□□□ -0.27
SHKBP1-221ENST00000599833 C14orf178Q8N769 122 aaPredicted RBP13.38□□□□□ -0.27
SHKBP1-221ENST00000599833 KRTAP1-5Q9BYS1 174 aa13.38□□□□□ -0.27
SHKBP1-221ENST00000599833 KIF25-AS1Q9Y6Z4 181 aa13.38□□□□□ -0.27
SHKBP1-221ENST00000599833 A0A087WWL8 130 aa13.37□□□□□ -0.27
SHKBP1-221ENST00000599833 M0R2N4 97 aa13.37□□□□□ -0.27
SHKBP1-221ENST00000599833 P01737 135 aa13.37□□□□□ -0.27
SHKBP1-221ENST00000599833 NEGR1Q7Z3B1 354 aa13.37□□□□□ -0.27
SHKBP1-221ENST00000599833 CEBPGP53567 150 aa13.36□□□□□ -0.27
SHKBP1-221ENST00000599833 LINC00315P59091 139 aa13.36□□□□□ -0.27
SHKBP1-221ENST00000599833 RPS20P60866 119 aaKnown RBP13.36□□□□□ -0.27
SHKBP1-221ENST00000599833 RHOHQ15669 191 aa13.36□□□□□ -0.27
SHKBP1-221ENST00000599833 FAM231DQ6ZW35 169 aa13.36□□□□□ -0.27
SHKBP1-221ENST00000599833 LINC01551Q86U37 167 aa13.36□□□□□ -0.27
SHKBP1-221ENST00000599833 DAZAP1Q96EP5 407 aaKnown RBP13.36□□□□□ -0.27
SHKBP1-221ENST00000599833 SMIM7Q9BQ49 75 aa13.36□□□□□ -0.27
SHKBP1-221ENST00000599833 BIN3Q9NQY0 253 aa13.36□□□□□ -0.27
SHKBP1-221ENST00000599833 SRIP30626 198 aa13.35□□□□□ -0.27
SHKBP1-221ENST00000599833 CTRLP40313 264 aa13.35□□□□□ -0.27
SHKBP1-221ENST00000599833 RPP21Q9H633 154 aaKnown RBP13.35□□□□□ -0.27
SHKBP1-221ENST00000599833 Q9H8V8 135 aa13.35□□□□□ -0.27
SHKBP1-221ENST00000599833 DNAH5Q8TE73 4624 aa13.35□□□□□ -0.27
SHKBP1-221ENST00000599833 NBDYA0A0U1RRE5 68 aa13.34□□□□□ -0.27
SHKBP1-221ENST00000599833 RHODO00212 210 aa13.34□□□□□ -0.27
SHKBP1-221ENST00000599833 RTL8CO15255 209 aa13.34□□□□□ -0.27
SHKBP1-221ENST00000599833 FER1L6-AS1Q8NA97 138 aa13.34□□□□□ -0.27
SHKBP1-221ENST00000599833 GTSF1Q8WW33 167 aa13.34□□□□□ -0.27
SHKBP1-221ENST00000599833 CNFNQ9BYD5 112 aa13.34□□□□□ -0.27
SHKBP1-221ENST00000599833 MSRB1Q9NZV6 116 aa13.34□□□□□ -0.27
SHKBP1-221ENST00000599833 ZNF727A8MUV8 499 aa13.33□□□□□ -0.28
SHKBP1-221ENST00000599833 TIRAPP58753 221 aa13.33□□□□□ -0.28
SHKBP1-221ENST00000599833 FAM74A4Q5TZK3 123 aa13.33□□□□□ -0.28
SHKBP1-221ENST00000599833 SMDT1Q9H4I9 107 aa13.33□□□□□ -0.28
SHKBP1-221ENST00000599833 LYZL1Q6UWQ5 148 aa13.32□□□□□ -0.28
SHKBP1-221ENST00000599833 PRADC1Q9BSG0 188 aa13.32□□□□□ -0.28
SHKBP1-221ENST00000599833 SPANXN1Q5VSR9 72 aa13.31□□□□□ -0.28
SHKBP1-221ENST00000599833 RPL23P62829 140 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-221ENST00000599833 PEA15Q15121 130 aa13.3□□□□□ -0.28
SHKBP1-221ENST00000599833 FAM74A3Q4VXF1 159 aa13.3□□□□□ -0.28
SHKBP1-221ENST00000599833 CLLU1Q5K131 121 aa13.3□□□□□ -0.28
SHKBP1-221ENST00000599833 WFDC10BQ8IUB3 73 aa13.3□□□□□ -0.28
SHKBP1-221ENST00000599833 A0A1W2PPQ1 181 aa13.29□□□□□ -0.28
SHKBP1-221ENST00000599833 XKRY2A2RUG3 117 aa13.29□□□□□ -0.28
SHKBP1-221ENST00000599833 SSTP61278 116 aa13.29□□□□□ -0.28
SHKBP1-221ENST00000599833 CT83Q5H943 113 aa13.29□□□□□ -0.28
SHKBP1-221ENST00000599833 WDR73Q6P4I2 378 aa13.29□□□□□ -0.28
SHKBP1-221ENST00000599833 SH2D6Q7Z4S9 175 aa13.29□□□□□ -0.28
SHKBP1-221ENST00000599833 TPPP3Q9BW30 176 aa13.29□□□□□ -0.28
SHKBP1-221ENST00000599833 GAGE12JA6NER3 117 aa13.28□□□□□ -0.28
SHKBP1-221ENST00000599833 F2Z2F3 143 aa13.28□□□□□ -0.28
SHKBP1-221ENST00000599833 GATCO43716 136 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-221ENST00000599833 RAB4BP61018 213 aa13.28□□□□□ -0.28
SHKBP1-221ENST00000599833 CACNG7P62955 275 aa13.28□□□□□ -0.28
SHKBP1-221ENST00000599833 GAGE1Q13065 139 aa13.28□□□□□ -0.28
SHKBP1-221ENST00000599833 GAGE4Q13068 117 aa13.28□□□□□ -0.28
SHKBP1-221ENST00000599833 GAGE5Q13069 117 aa13.28□□□□□ -0.28
SHKBP1-221ENST00000599833 GAGE13Q4V321 117 aa13.28□□□□□ -0.28
SHKBP1-221ENST00000599833 ISOC2Q96AB3 205 aa13.28□□□□□ -0.28
SHKBP1-221ENST00000599833 OSTCQ9NRP0 149 aa13.28□□□□□ -0.28
SHKBP1-221ENST00000599833 FOXA3P55318 350 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-221ENST00000599833 TMEM241Q24JQ0 296 aa13.27□□□□□ -0.29
SHKBP1-221ENST00000599833 OR10G8Q8NGN5 311 aa13.27□□□□□ -0.29
SHKBP1-221ENST00000599833 AP1S3Q96PC3 154 aa13.27□□□□□ -0.29
SHKBP1-221ENST00000599833 V9GYV3 84 aa13.27□□□□□ -0.29
SHKBP1-221ENST00000599833 TRBV10-1A0A0K0K1A3 114 aa13.26□□□□□ -0.29
SHKBP1-221ENST00000599833 SIVA1O15304 175 aa13.26□□□□□ -0.29
SHKBP1-221ENST00000599833 NTF3P20783 257 aa13.26□□□□□ -0.29
SHKBP1-221ENST00000599833 ERVFC1-1P60608 527 aa13.26□□□□□ -0.29
SHKBP1-221ENST00000599833 ATP6V0E2Q8NHE4 81 aa13.26□□□□□ -0.29
SHKBP1-221ENST00000599833 GTSF1LQ9H1H1 148 aa13.26□□□□□ -0.29
SHKBP1-221ENST00000599833 LRP1BQ9NZR2 4599 aa13.25□□□□□ -0.29
SHKBP1-221ENST00000599833 DNAH10OSP0CZ25 163 aa13.25□□□□□ -0.29
SHKBP1-221ENST00000599833 EVI2AP22794 236 aa13.25□□□□□ -0.29
SHKBP1-221ENST00000599833 NEXN-AS1Q8NBZ9 246 aa13.25□□□□□ -0.29
SHKBP1-221ENST00000599833 NAT8Q9UHE5 227 aa13.25□□□□□ -0.29
SHKBP1-221ENST00000599833 A0A1B0GVY2 172 aa13.24□□□□□ -0.29
SHKBP1-221ENST00000599833 UBE2D3P61077 147 aa13.24□□□□□ -0.29
SHKBP1-221ENST00000599833 UBE2D2P62837 147 aa13.24□□□□□ -0.29
SHKBP1-221ENST00000599833 A8MWL6 223 aa13.23□□□□□ -0.29
SHKBP1-221ENST00000599833 ZNF56Q15929 161 aa13.23□□□□□ -0.29
SHKBP1-221ENST00000599833 LELP1Q5T871 98 aa13.23□□□□□ -0.29
SHKBP1-221ENST00000599833 C1orf134Q5TEV5 83 aa13.23□□□□□ -0.29
SHKBP1-221ENST00000599833 C6orf223Q8N319 242 aa13.23□□□□□ -0.29
SHKBP1-221ENST00000599833 TSKUQ8WUA8 353 aa13.23□□□□□ -0.29
SHKBP1-221ENST00000599833 M0QY20 66 aa13.22□□□□□ -0.29
SHKBP1-221ENST00000599833 RAB14P61106 215 aa13.22□□□□□ -0.29
SHKBP1-221ENST00000599833 TTC32Q5I0X7 151 aa13.22□□□□□ -0.29
SHKBP1-221ENST00000599833 SOHLH1Q5JUK2 328 aa13.22□□□□□ -0.29
SHKBP1-221ENST00000599833 Q6ZRN7 208 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-221ENST00000599833 GFRA4Q9GZZ7 299 aa13.22□□□□□ -0.29
SHKBP1-221ENST00000599833 TRBV7-3A0A075B6L6 115 aa13.21□□□□□ -0.29
SHKBP1-221ENST00000599833 ADIRFQ15847 76 aa13.21□□□□□ -0.29
SHKBP1-221ENST00000599833 SUMO4Q6EEV6 95 aa13.21□□□□□ -0.29
SHKBP1-221ENST00000599833 LINC00336Q6ZUF6 198 aa13.21□□□□□ -0.29
SHKBP1-221ENST00000599833 PGLYRP4Q96LB8 373 aa13.21□□□□□ -0.29
SHKBP1-221ENST00000599833 FAM231BA6NCW3 169 aa13.2□□□□□ -0.3
SHKBP1-221ENST00000599833 HIGD1CA8MV81 97 aa13.2□□□□□ -0.3
SHKBP1-221ENST00000599833 DPH3P1Q9H4G8 78 aa13.2□□□□□ -0.3
SHKBP1-221ENST00000599833 TRGC1P0CF51 173 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 129.1 ms