RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SMDT1Q9H4I9 107 aa10.34□□□□□ -0.75
UPF1-202ENST00000594243 A0A087WWL8 130 aa10.33□□□□□ -0.76
UPF1-202ENST00000594243 A0A1W2PPQ1 181 aa10.33□□□□□ -0.76
UPF1-202ENST00000594243 ZNF727A8MUV8 499 aa10.33□□□□□ -0.76
UPF1-202ENST00000594243 IGLC6P0CF74 106 aa10.33□□□□□ -0.76
UPF1-202ENST00000594243 GZMBP10144 247 aa10.33□□□□□ -0.76
UPF1-202ENST00000594243 TTC32Q5I0X7 151 aa10.33□□□□□ -0.76
UPF1-202ENST00000594243 SOHLH1Q5JUK2 328 aa10.33□□□□□ -0.76
UPF1-202ENST00000594243 Q6ZSN1 163 aa10.33□□□□□ -0.76
UPF1-202ENST00000594243 TPPP3Q9BW30 176 aa10.33□□□□□ -0.76
UPF1-202ENST00000594243 RNASE7Q9H1E1 156 aaKnown RBP10.33□□□□□ -0.76
UPF1-202ENST00000594243 MUC21A0A0G2JKD1 596 aa10.32□□□□□ -0.76
UPF1-202ENST00000594243 MUC21A0A140T8X8 626 aa10.32□□□□□ -0.76
UPF1-202ENST00000594243 SIVA1O15304 175 aa10.32□□□□□ -0.76
UPF1-202ENST00000594243 SMIM17P0DL12 118 aa10.32□□□□□ -0.76
UPF1-202ENST00000594243 RAB14P61106 215 aa10.32□□□□□ -0.76
UPF1-202ENST00000594243 SSTP61278 116 aa10.32□□□□□ -0.76
UPF1-202ENST00000594243 CACNG7P62955 275 aa10.32□□□□□ -0.76
UPF1-202ENST00000594243 FAM74A3Q4VXF1 159 aa10.32□□□□□ -0.76
UPF1-202ENST00000594243 C1orf134Q5TEV5 83 aa10.32□□□□□ -0.76
UPF1-202ENST00000594243 LINC00336Q6ZUF6 198 aa10.32□□□□□ -0.76
UPF1-202ENST00000594243 FAM231DQ6ZW35 169 aa10.32□□□□□ -0.76
UPF1-202ENST00000594243 RPP21Q9H633 154 aaKnown RBP10.32□□□□□ -0.76
UPF1-202ENST00000594243 NACAE9PAV3 2078 aa10.32□□□□□ -0.76
UPF1-202ENST00000594243 TIRAPP58753 221 aa10.31□□□□□ -0.76
UPF1-202ENST00000594243 ERVFC1-1P60608 527 aa10.31□□□□□ -0.76
UPF1-202ENST00000594243 RAB4BP61018 213 aa10.31□□□□□ -0.76
UPF1-202ENST00000594243 ATP6V0E2Q8NHE4 81 aa10.31□□□□□ -0.76
UPF1-202ENST00000594243 DNAH10Q8IVF4 4471 aa10.31□□□□□ -0.76
UPF1-202ENST00000594243 GAGE12JA6NER3 117 aa10.3□□□□□ -0.76
UPF1-202ENST00000594243 GATCO43716 136 aaKnown RBP10.3□□□□□ -0.76
UPF1-202ENST00000594243 GAGE1Q13065 139 aa10.3□□□□□ -0.76
UPF1-202ENST00000594243 GAGE4Q13068 117 aa10.3□□□□□ -0.76
UPF1-202ENST00000594243 GAGE5Q13069 117 aa10.3□□□□□ -0.76
UPF1-202ENST00000594243 GAGE13Q4V321 117 aa10.3□□□□□ -0.76
UPF1-202ENST00000594243 WDR73Q6P4I2 378 aa10.3□□□□□ -0.76
UPF1-202ENST00000594243 LYZL1Q6UWQ5 148 aa10.3□□□□□ -0.76
UPF1-202ENST00000594243 LINC01551Q86U37 167 aa10.3□□□□□ -0.76
UPF1-202ENST00000594243 C14orf178Q8N769 122 aaPredicted RBP10.3□□□□□ -0.76
UPF1-202ENST00000594243 AP1S3Q96PC3 154 aa10.3□□□□□ -0.76
UPF1-202ENST00000594243 VPS13DQ5THJ4 4388 aa10.3□□□□□ -0.76
UPF1-202ENST00000594243 TRAV9-2A0A087WT02 112 aa10.29□□□□□ -0.76
UPF1-202ENST00000594243 TRBV10-1A0A0K0K1A3 114 aa10.29□□□□□ -0.76
UPF1-202ENST00000594243 ZNF56Q15929 161 aa10.29□□□□□ -0.76
UPF1-202ENST00000594243 TMEM241Q24JQ0 296 aa10.29□□□□□ -0.76
UPF1-202ENST00000594243 GTSF1LQ9H1H1 148 aa10.29□□□□□ -0.76
UPF1-202ENST00000594243 TRAV8-6A0A0B4J262 113 aa10.28□□□□□ -0.76
UPF1-202ENST00000594243 A8MWL6 223 aa10.28□□□□□ -0.76
UPF1-202ENST00000594243 F5H697 171 aa10.28□□□□□ -0.76
UPF1-202ENST00000594243 K7EP13 123 aa10.28□□□□□ -0.76
UPF1-202ENST00000594243 BTF3P20290 206 aaKnown RBP10.28□□□□□ -0.76
UPF1-202ENST00000594243 NTF3P20783 257 aa10.28□□□□□ -0.76
UPF1-202ENST00000594243 SRSF3P84103 164 aaKnown RBP10.28□□□□□ -0.76
UPF1-202ENST00000594243 C6orf223Q8N319 242 aa10.28□□□□□ -0.76
UPF1-202ENST00000594243 C9JQL5 133 aa10.27□□□□□ -0.77
UPF1-202ENST00000594243 RTL8CO15255 209 aa10.27□□□□□ -0.77
UPF1-202ENST00000594243 TRGC1P0CF51 173 aa10.27□□□□□ -0.77
UPF1-202ENST00000594243 CTRLP40313 264 aa10.27□□□□□ -0.77
UPF1-202ENST00000594243 RPL36AP83881 106 aaKnown RBP10.27□□□□□ -0.77
UPF1-202ENST00000594243 CT83Q5H943 113 aa10.27□□□□□ -0.77
UPF1-202ENST00000594243 LELP1Q5T871 98 aa10.27□□□□□ -0.77
UPF1-202ENST00000594243 RPL36ALQ969Q0 106 aaKnown RBP10.27□□□□□ -0.77
UPF1-202ENST00000594243 KIF25-AS1Q9Y6Z4 181 aa10.27□□□□□ -0.77
UPF1-202ENST00000594243 TRBV7-3A0A075B6L6 115 aa10.26□□□□□ -0.77
UPF1-202ENST00000594243 PRSS29PA6NIE9 313 aa10.26□□□□□ -0.77
UPF1-202ENST00000594243 LINC00694P0DN24 101 aa10.26□□□□□ -0.77
UPF1-202ENST00000594243 EVI2AP22794 236 aa10.26□□□□□ -0.77
UPF1-202ENST00000594243 OR10J3Q5JRS4 329 aa10.26□□□□□ -0.77
UPF1-202ENST00000594243 WFDC10BQ8IUB3 73 aa10.26□□□□□ -0.77
UPF1-202ENST00000594243 C15orf54Q8N8G6 183 aa10.26□□□□□ -0.77
UPF1-202ENST00000594243 OSTCQ9NRP0 149 aa10.26□□□□□ -0.77
UPF1-202ENST00000594243 MSRB1Q9NZV6 116 aa10.26□□□□□ -0.77
UPF1-202ENST00000594243 Q9UF83 564 aa10.26□□□□□ -0.77
UPF1-202ENST00000594243 NAT8Q9UHE5 227 aa10.26□□□□□ -0.77
UPF1-202ENST00000594243 DNAH6Q9C0G6 4158 aa10.25□□□□□ -0.77
UPF1-202ENST00000594243 A0A087WWC5 75 aa10.25□□□□□ -0.77
UPF1-202ENST00000594243 DNAH10OSP0CZ25 163 aa10.25□□□□□ -0.77
UPF1-202ENST00000594243 FOXA3P55318 350 aaPredicted RBP10.25□□□□□ -0.77
UPF1-202ENST00000594243 TWIST1Q15672 202 aa10.25□□□□□ -0.77
UPF1-202ENST00000594243 OR10G8Q8NGN5 311 aa10.25□□□□□ -0.77
UPF1-202ENST00000594243 GTSF1Q8WW33 167 aa10.25□□□□□ -0.77
UPF1-202ENST00000594243 CNFNQ9BYD5 112 aa10.25□□□□□ -0.77
UPF1-202ENST00000594243 IGHV3-38A0A0C4DH36 116 aa10.24□□□□□ -0.77
UPF1-202ENST00000594243 LINC00315P59091 139 aa10.24□□□□□ -0.77
UPF1-202ENST00000594243 RPL23P62829 140 aaKnown RBP10.24□□□□□ -0.77
UPF1-202ENST00000594243 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.24□□□□□ -0.77
UPF1-202ENST00000594243 ISOC2Q96AB3 205 aa10.24□□□□□ -0.77
UPF1-202ENST00000594243 KRTAP1-5Q9BYS1 174 aa10.24□□□□□ -0.77
UPF1-202ENST00000594243 GFRA4Q9GZZ7 299 aa10.24□□□□□ -0.77
UPF1-202ENST00000594243 FAM231BA6NCW3 169 aa10.23□□□□□ -0.77
UPF1-202ENST00000594243 H7C1H1 209 aa10.23□□□□□ -0.77
UPF1-202ENST00000594243 MGPP08493 103 aa10.23□□□□□ -0.77
UPF1-202ENST00000594243 CLLU1Q5K131 121 aa10.23□□□□□ -0.77
UPF1-202ENST00000594243 SMIM15Q7Z3B0 74 aa10.23□□□□□ -0.77
UPF1-202ENST00000594243 TSKUQ8WUA8 353 aa10.23□□□□□ -0.77
UPF1-202ENST00000594243 BORCS7Q96B45 105 aa10.23□□□□□ -0.77
UPF1-202ENST00000594243 DPH3P1Q9H4G8 78 aa10.23□□□□□ -0.77
UPF1-202ENST00000594243 UBE2D3P61077 147 aa10.22□□□□□ -0.77
UPF1-202ENST00000594243 UBE2D2P62837 147 aa10.22□□□□□ -0.77
UPF1-202ENST00000594243 ADIRFQ15847 76 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 155 ms