RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 MSRB1Q9NZV6 116 aa13.85□□□□□ -0.19
SS18-224ENST00000584083 DYNC1H1Q14204 4646 aaKnown RBP13.85□□□□□ -0.19
SS18-224ENST00000584083 LELP1Q5T871 98 aa13.84□□□□□ -0.19
SS18-224ENST00000584083 C9orf62Q8N4C0 152 aa13.84□□□□□ -0.19
SS18-224ENST00000584083 C10orf126Q8N4M7 172 aa13.84□□□□□ -0.19
SS18-224ENST00000584083 BOLA1Q9Y3E2 137 aa13.84□□□□□ -0.19
SS18-224ENST00000584083 DNAH11Q96DT5 4516 aa13.83□□□□□ -0.19
SS18-224ENST00000584083 CXCL1P09341 107 aa13.83□□□□□ -0.2
SS18-224ENST00000584083 MEF2BQ02080 365 aaPredicted RBP13.83□□□□□ -0.2
SS18-224ENST00000584083 CENPWQ5EE01 88 aa13.83□□□□□ -0.2
SS18-224ENST00000584083 Q9UF83 564 aa13.83□□□□□ -0.2
SS18-224ENST00000584083 HERC2O95714 4834 aa13.83□□□□□ -0.2
SS18-224ENST00000584083 PDE6DO43924 150 aa13.82□□□□□ -0.2
SS18-224ENST00000584083 RAB19A4D1S5 217 aa13.81□□□□□ -0.2
SS18-224ENST00000584083 EREGO14944 169 aa13.81□□□□□ -0.2
SS18-224ENST00000584083 LINC01556Q5JQF7 62 aa13.81□□□□□ -0.2
SS18-224ENST00000584083 MED9Q9NWA0 146 aa13.81□□□□□ -0.2
SS18-224ENST00000584083 BCL2P10415 239 aa13.8□□□□□ -0.2
SS18-224ENST00000584083 GNG4P50150 75 aa13.8□□□□□ -0.2
SS18-224ENST00000584083 KRTAP10-2P60368 255 aa13.8□□□□□ -0.2
SS18-224ENST00000584083 ERVFC1-1P60608 527 aa13.8□□□□□ -0.2
SS18-224ENST00000584083 OR10AG1Q8NH19 301 aa13.8□□□□□ -0.2
SS18-224ENST00000584083 DAZAP1Q96EP5 407 aaKnown RBP13.8□□□□□ -0.2
SS18-224ENST00000584083 VAX2Q9UIW0 290 aa13.8□□□□□ -0.2
SS18-224ENST00000584083 MUC21A0A0G2JKD1 596 aa13.79□□□□□ -0.2
SS18-224ENST00000584083 MUC21A0A140T8X8 626 aa13.79□□□□□ -0.2
SS18-224ENST00000584083 IGHV3-30P01768 117 aa13.79□□□□□ -0.2
SS18-224ENST00000584083 IGHV3-33P01772 117 aa13.79□□□□□ -0.2
SS18-224ENST00000584083 LINC00694P0DN24 101 aa13.79□□□□□ -0.2
SS18-224ENST00000584083 IGHV3-30-3P0DP02 117 aa13.79□□□□□ -0.2
SS18-224ENST00000584083 IGHV3-30-5P0DP03 117 aa13.79□□□□□ -0.2
SS18-224ENST00000584083 SSTP61278 116 aa13.79□□□□□ -0.2
SS18-224ENST00000584083 SPANXN1Q5VSR9 72 aa13.79□□□□□ -0.2
SS18-224ENST00000584083 SNAI2O43623 268 aa13.77□□□□□ -0.21
SS18-224ENST00000584083 IGLV2-8P01709 118 aa13.77□□□□□ -0.21
SS18-224ENST00000584083 OR5AL1P0C617 328 aa13.77□□□□□ -0.21
SS18-224ENST00000584083 TAGLN2P37802 199 aaKnown RBP13.77□□□□□ -0.21
SS18-224ENST00000584083 ALKAL2Q6UX46 152 aa13.77□□□□□ -0.21
SS18-224ENST00000584083 SSBP4Q9BWG4 385 aaPredicted RBP13.77□□□□□ -0.21
SS18-224ENST00000584083 A0A087WWC5 75 aa13.76□□□□□ -0.21
SS18-224ENST00000584083 IBA57-AS1B1ANH7 110 aa13.76□□□□□ -0.21
SS18-224ENST00000584083 ZNF56Q15929 161 aa13.76□□□□□ -0.21
SS18-224ENST00000584083 OR2D3Q8NGH3 330 aa13.76□□□□□ -0.21
SS18-224ENST00000584083 SMIM12Q96EX1 92 aa13.76□□□□□ -0.21
SS18-224ENST00000584083 Q9HAA7 133 aa13.76□□□□□ -0.21
SS18-224ENST00000584083 TRBV10-1A0A0K0K1A3 114 aa13.75□□□□□ -0.21
SS18-224ENST00000584083 GZMBP10144 247 aa13.75□□□□□ -0.21
SS18-224ENST00000584083 RPS20P60866 119 aaKnown RBP13.75□□□□□ -0.21
SS18-224ENST00000584083 RAB4BP61018 213 aa13.75□□□□□ -0.21
SS18-224ENST00000584083 RPL36AP83881 106 aaKnown RBP13.75□□□□□ -0.21
SS18-224ENST00000584083 RPL36ALQ969Q0 106 aaKnown RBP13.75□□□□□ -0.21
SS18-224ENST00000584083 TPPP3Q9BW30 176 aa13.75□□□□□ -0.21
SS18-224ENST00000584083 A0A087WTM6 91 aa13.74□□□□□ -0.21
SS18-224ENST00000584083 PSCAO43653 123 aa13.74□□□□□ -0.21
SS18-224ENST00000584083 BLOC1S1P78537 153 aa13.74□□□□□ -0.21
SS18-224ENST00000584083 BIN3Q9NQY0 253 aa13.74□□□□□ -0.21
SS18-224ENST00000584083 TRBV20OR9-2A0A075B6H5 130 aa13.73□□□□□ -0.21
SS18-224ENST00000584083 C19orf71A6NCJ1 209 aa13.73□□□□□ -0.21
SS18-224ENST00000584083 F5H697 171 aa13.73□□□□□ -0.21
SS18-224ENST00000584083 P01737 135 aa13.73□□□□□ -0.21
SS18-224ENST00000584083 FER1L6-AS1Q8NA97 138 aa13.73□□□□□ -0.21
SS18-224ENST00000584083 PGPEP1Q9NXJ5 209 aa13.73□□□□□ -0.21
SS18-224ENST00000584083 TRBV7-3A0A075B6L6 115 aa13.72□□□□□ -0.21
SS18-224ENST00000584083 A0A1B0GVG6 124 aa13.72□□□□□ -0.21
SS18-224ENST00000584083 SMIM17P0DL12 118 aa13.72□□□□□ -0.21
SS18-224ENST00000584083 FUSP35637 526 aaKnown RBP eCLIP13.72□□□□□ -0.21
SS18-224ENST00000584083 NKX2-5P52952 324 aaPredicted RBP13.72□□□□□ -0.21
SS18-224ENST00000584083 Q8N3U1 123 aa13.72□□□□□ -0.21
SS18-224ENST00000584083 XKRY2A2RUG3 117 aa13.71□□□□□ -0.21
SS18-224ENST00000584083 RBFOX3A6NFN3 312 aa13.71□□□□□ -0.21
SS18-224ENST00000584083 CDK2AP2O75956 126 aa13.71□□□□□ -0.21
SS18-224ENST00000584083 AP1S3Q96PC3 154 aa13.71□□□□□ -0.21
SS18-224ENST00000584083 URGCP-MRPS24S4R325 110 aa13.71□□□□□ -0.21
SS18-224ENST00000584083 IGLC6P0CF74 106 aa13.7□□□□□ -0.22
SS18-224ENST00000584083 UBE2D3P61077 147 aa13.7□□□□□ -0.22
SS18-224ENST00000584083 UBE2D2P62837 147 aa13.7□□□□□ -0.22
SS18-224ENST00000584083 LAGE3Q14657 143 aa13.69□□□□□ -0.22
SS18-224ENST00000584083 DAZ4Q86SG3 579 aaKnown RBP13.69□□□□□ -0.22
SS18-224ENST00000584083 OR10G8Q8NGN5 311 aa13.69□□□□□ -0.22
SS18-224ENST00000584083 DAZ3Q9NR90 486 aaKnown RBP13.69□□□□□ -0.22
SS18-224ENST00000584083 CACNG7P62955 275 aa13.68□□□□□ -0.22
SS18-224ENST00000584083 CDPF1Q6NVV7 123 aa13.68□□□□□ -0.22
SS18-224ENST00000584083 NEXN-AS1Q8NBZ9 246 aa13.68□□□□□ -0.22
SS18-224ENST00000584083 F2Z2F3 143 aa13.67□□□□□ -0.22
SS18-224ENST00000584083 NUDT10Q8NFP7 164 aa13.67□□□□□ -0.22
SS18-224ENST00000584083 NUDT11Q96G61 164 aa13.67□□□□□ -0.22
SS18-224ENST00000584083 KIF25-AS1Q9Y6Z4 181 aa13.67□□□□□ -0.22
SS18-224ENST00000584083 TRAV8-3A0A0A6YYJ7 113 aa13.66□□□□□ -0.22
SS18-224ENST00000584083 MGPP08493 103 aa13.66□□□□□ -0.22
SS18-224ENST00000584083 TOR2AQ5JU69 321 aa13.66□□□□□ -0.22
SS18-224ENST00000584083 NIT1Q86X76 327 aa13.66□□□□□ -0.22
SS18-224ENST00000584083 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.66□□□□□ -0.22
SS18-224ENST00000584083 OCC1Q8TAD7 63 aa13.66□□□□□ -0.22
SS18-224ENST00000584083 TM2D2Q9BX73 214 aa13.66□□□□□ -0.22
SS18-224ENST00000584083 A0A087WX48 190 aa13.65□□□□□ -0.22
SS18-224ENST00000584083 TMEM250H0YL14 139 aa13.65□□□□□ -0.22
SS18-224ENST00000584083 CEBPGP53567 150 aa13.65□□□□□ -0.22
SS18-224ENST00000584083 KCNIP4Q6PIL6 250 aa13.65□□□□□ -0.22
SS18-224ENST00000584083 LYZL1Q6UWQ5 148 aa13.65□□□□□ -0.22
SS18-224ENST00000584083 LYPD6BQ8NI32 183 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms