RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TRAV8-6A0A0B4J262 113 aa16.21■□□□□ 0.19
SHMT1-206ENST00000579558 PDE6DO43924 150 aa16.21■□□□□ 0.19
SHMT1-206ENST00000579558 BCL2P10415 239 aa16.21■□□□□ 0.19
SHMT1-206ENST00000579558 OR10J3Q5JRS4 329 aa16.21■□□□□ 0.19
SHMT1-206ENST00000579558 C14orf178Q8N769 122 aaPredicted RBP16.21■□□□□ 0.19
SHMT1-206ENST00000579558 GTSF1LQ9H1H1 148 aa16.21■□□□□ 0.19
SHMT1-206ENST00000579558 IGHV3-38A0A0C4DH36 116 aa16.2■□□□□ 0.18
SHMT1-206ENST00000579558 C16orf90A8MZG2 172 aa16.2■□□□□ 0.18
SHMT1-206ENST00000579558 CRYGDP07320 174 aa16.2■□□□□ 0.18
SHMT1-206ENST00000579558 LELP1Q5T871 98 aa16.2■□□□□ 0.18
SHMT1-206ENST00000579558 NFE4Q86UQ8 179 aa16.2■□□□□ 0.18
SHMT1-206ENST00000579558 MSRB1Q9NZV6 116 aa16.2■□□□□ 0.18
SHMT1-206ENST00000579558 SPATA12Q7Z6I5 190 aa16.19■□□□□ 0.18
SHMT1-206ENST00000579558 C10orf126Q8N4M7 172 aa16.19■□□□□ 0.18
SHMT1-206ENST00000579558 VAX2Q9UIW0 290 aa16.19■□□□□ 0.18
SHMT1-206ENST00000579558 RAB19A4D1S5 217 aa16.18■□□□□ 0.18
SHMT1-206ENST00000579558 LINC00694P0DN24 101 aa16.18■□□□□ 0.18
SHMT1-206ENST00000579558 OR10AG1Q8NH19 301 aa16.18■□□□□ 0.18
SHMT1-206ENST00000579558 MED9Q9NWA0 146 aa16.18■□□□□ 0.18
SHMT1-206ENST00000579558 Q9UF83 564 aa16.18■□□□□ 0.18
SHMT1-206ENST00000579558 BOLA1Q9Y3E2 137 aa16.18■□□□□ 0.18
SHMT1-206ENST00000579558 TAGLN2P37802 199 aaKnown RBP16.17■□□□□ 0.18
SHMT1-206ENST00000579558 GNG4P50150 75 aa16.17■□□□□ 0.18
SHMT1-206ENST00000579558 LINC01556Q5JQF7 62 aa16.17■□□□□ 0.18
SHMT1-206ENST00000579558 ALKAL2Q6UX46 152 aa16.17■□□□□ 0.18
SHMT1-206ENST00000579558 SNAI2O43623 268 aa16.16■□□□□ 0.18
SHMT1-206ENST00000579558 IGLV2-8P01709 118 aa16.16■□□□□ 0.18
SHMT1-206ENST00000579558 OR5AL1P0C617 328 aa16.15■□□□□ 0.18
SHMT1-206ENST00000579558 SPANXN1Q5VSR9 72 aa16.15■□□□□ 0.18
SHMT1-206ENST00000579558 DAZAP1Q96EP5 407 aaKnown RBP16.15■□□□□ 0.18
SHMT1-206ENST00000579558 SMIM12Q96EX1 92 aa16.15■□□□□ 0.18
SHMT1-206ENST00000579558 SSBP4Q9BWG4 385 aaPredicted RBP16.15■□□□□ 0.18
SHMT1-206ENST00000579558 MUC21A0A0G2JKD1 596 aa16.14■□□□□ 0.17
SHMT1-206ENST00000579558 MUC21A0A140T8X8 626 aa16.14■□□□□ 0.17
SHMT1-206ENST00000579558 A0A1B0GVG6 124 aa16.14■□□□□ 0.17
SHMT1-206ENST00000579558 ERVFC1-1P60608 527 aa16.13■□□□□ 0.17
SHMT1-206ENST00000579558 BLOC1S1P78537 153 aa16.13■□□□□ 0.17
SHMT1-206ENST00000579558 TRBV20OR9-2A0A075B6H5 130 aa16.12■□□□□ 0.17
SHMT1-206ENST00000579558 IGHV3-30P01768 117 aa16.12■□□□□ 0.17
SHMT1-206ENST00000579558 IGHV3-33P01772 117 aa16.12■□□□□ 0.17
SHMT1-206ENST00000579558 IGHV3-30-3P0DP02 117 aa16.12■□□□□ 0.17
SHMT1-206ENST00000579558 IGHV3-30-5P0DP03 117 aa16.12■□□□□ 0.17
SHMT1-206ENST00000579558 NKX2-5P52952 324 aaPredicted RBP16.12■□□□□ 0.17
SHMT1-206ENST00000579558 KRTAP10-2P60368 255 aa16.12■□□□□ 0.17
SHMT1-206ENST00000579558 SSTP61278 116 aa16.12■□□□□ 0.17
SHMT1-206ENST00000579558 OR2D3Q8NGH3 330 aa16.12■□□□□ 0.17
SHMT1-206ENST00000579558 RYR1P21817 5038 aa16.12■□□□□ 0.17
SHMT1-206ENST00000579558 TRBV10-1A0A0K0K1A3 114 aa16.11■□□□□ 0.17
SHMT1-206ENST00000579558 C19orf71A6NCJ1 209 aa16.11■□□□□ 0.17
SHMT1-206ENST00000579558 EREGO14944 169 aa16.11■□□□□ 0.17
SHMT1-206ENST00000579558 RPS20P60866 119 aaKnown RBP16.11■□□□□ 0.17
SHMT1-206ENST00000579558 ZNF56Q15929 161 aa16.11■□□□□ 0.17
SHMT1-206ENST00000579558 BIN3Q9NQY0 253 aa16.11■□□□□ 0.17
SHMT1-206ENST00000579558 A0A087WWC5 75 aa16.1■□□□□ 0.17
SHMT1-206ENST00000579558 GZMBP10144 247 aa16.1■□□□□ 0.17
SHMT1-206ENST00000579558 IBA57-AS1B1ANH7 110 aa16.09■□□□□ 0.17
SHMT1-206ENST00000579558 P01737 135 aa16.09■□□□□ 0.17
SHMT1-206ENST00000579558 RAB4BP61018 213 aa16.09■□□□□ 0.17
SHMT1-206ENST00000579558 RPL36AP83881 106 aaKnown RBP16.09■□□□□ 0.17
SHMT1-206ENST00000579558 RPL36ALQ969Q0 106 aaKnown RBP16.09■□□□□ 0.17
SHMT1-206ENST00000579558 TPPP3Q9BW30 176 aa16.09■□□□□ 0.17
SHMT1-206ENST00000579558 FER1L6-AS1Q8NA97 138 aa16.08■□□□□ 0.16
SHMT1-206ENST00000579558 XKRY2A2RUG3 117 aa16.07■□□□□ 0.16
SHMT1-206ENST00000579558 RBFOX3A6NFN3 312 aa16.07■□□□□ 0.16
SHMT1-206ENST00000579558 IGLC6P0CF74 106 aa16.07■□□□□ 0.16
SHMT1-206ENST00000579558 AP1S3Q96PC3 154 aa16.07■□□□□ 0.16
SHMT1-206ENST00000579558 Q9HAA7 133 aa16.07■□□□□ 0.16
SHMT1-206ENST00000579558 TRBV7-3A0A075B6L6 115 aa16.06■□□□□ 0.16
SHMT1-206ENST00000579558 A0A087WTM6 91 aa16.06■□□□□ 0.16
SHMT1-206ENST00000579558 SMIM17P0DL12 118 aa16.06■□□□□ 0.16
SHMT1-206ENST00000579558 Q8N3U1 123 aa16.06■□□□□ 0.16
SHMT1-206ENST00000579558 F5H697 171 aa16.05■□□□□ 0.16
SHMT1-206ENST00000579558 UBE2D3P61077 147 aa16.05■□□□□ 0.16
SHMT1-206ENST00000579558 UBE2D2P62837 147 aa16.05■□□□□ 0.16
SHMT1-206ENST00000579558 LYPD6BQ8NI32 183 aa16.05■□□□□ 0.16
SHMT1-206ENST00000579558 PSCAO43653 123 aa16.04■□□□□ 0.16
SHMT1-206ENST00000579558 OR10G8Q8NGN5 311 aa16.04■□□□□ 0.16
SHMT1-206ENST00000579558 LRP1BQ9NZR2 4599 aa16.04■□□□□ 0.16
SHMT1-206ENST00000579558 CACNG7P62955 275 aa16.03■□□□□ 0.16
SHMT1-206ENST00000579558 NEXN-AS1Q8NBZ9 246 aa16.03■□□□□ 0.16
SHMT1-206ENST00000579558 NUDT10Q8NFP7 164 aa16.03■□□□□ 0.16
SHMT1-206ENST00000579558 NUDT11Q96G61 164 aa16.03■□□□□ 0.16
SHMT1-206ENST00000579558 PGPEP1Q9NXJ5 209 aa16.03■□□□□ 0.16
SHMT1-206ENST00000579558 KIF25-AS1Q9Y6Z4 181 aa16.03■□□□□ 0.16
SHMT1-206ENST00000579558 TMEM250H0YL14 139 aa16.02■□□□□ 0.16
SHMT1-206ENST00000579558 LAGE3Q14657 143 aa16.02■□□□□ 0.16
SHMT1-206ENST00000579558 OCC1Q8TAD7 63 aa16.02■□□□□ 0.16
SHMT1-206ENST00000579558 F2Z2F3 143 aa16.01■□□□□ 0.15
SHMT1-206ENST00000579558 K7EN84 100 aa16.01■□□□□ 0.15
SHMT1-206ENST00000579558 CDK2AP2O75956 126 aa16.01■□□□□ 0.15
SHMT1-206ENST00000579558 FUSP35637 526 aaKnown RBP eCLIP16.01■□□□□ 0.15
SHMT1-206ENST00000579558 DAZ4Q86SG3 579 aaKnown RBP16.01■□□□□ 0.15
SHMT1-206ENST00000579558 DAZ3Q9NR90 486 aaKnown RBP16.01■□□□□ 0.15
SHMT1-206ENST00000579558 URGCP-MRPS24S4R325 110 aa16.01■□□□□ 0.15
SHMT1-206ENST00000579558 MGPP08493 103 aa16■□□□□ 0.15
SHMT1-206ENST00000579558 TOR2AQ5JU69 321 aa16■□□□□ 0.15
SHMT1-206ENST00000579558 LYZL1Q6UWQ5 148 aa16■□□□□ 0.15
SHMT1-206ENST00000579558 NIT1Q86X76 327 aa16■□□□□ 0.15
SHMT1-206ENST00000579558 RNASE7Q9H1E1 156 aaKnown RBP16■□□□□ 0.15
SHMT1-206ENST00000579558 CEBPGP53567 150 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 130.1 ms