RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 RPL19P84098 196 aaKnown RBP10.06□□□□□ -0.8
SS18-212ENST00000579061 LINC01556Q5JQF7 62 aa10.06□□□□□ -0.8
SS18-212ENST00000579061 DERL1Q9BUN8 251 aa10.06□□□□□ -0.8
SS18-212ENST00000579061 SSBP4Q9BWG4 385 aaPredicted RBP10.06□□□□□ -0.8
SS18-212ENST00000579061 MSRB1Q9NZV6 116 aa10.06□□□□□ -0.8
SS18-212ENST00000579061 C16orf90A8MZG2 172 aa10.05□□□□□ -0.8
SS18-212ENST00000579061 OR10J3Q5JRS4 329 aa10.05□□□□□ -0.8
SS18-212ENST00000579061 FAM74A4Q5TZK3 123 aa10.05□□□□□ -0.8
SS18-212ENST00000579061 PRR27Q6MZM9 219 aa10.05□□□□□ -0.8
SS18-212ENST00000579061 VAX2Q9UIW0 290 aa10.05□□□□□ -0.8
SS18-212ENST00000579061 GAGE12JA6NER3 117 aa10.04□□□□□ -0.8
SS18-212ENST00000579061 IGLV2-8P01709 118 aa10.04□□□□□ -0.8
SS18-212ENST00000579061 GAGE1Q13065 139 aa10.04□□□□□ -0.8
SS18-212ENST00000579061 GAGE4Q13068 117 aa10.04□□□□□ -0.8
SS18-212ENST00000579061 GAGE5Q13069 117 aa10.04□□□□□ -0.8
SS18-212ENST00000579061 GAGE13Q4V321 117 aa10.04□□□□□ -0.8
SS18-212ENST00000579061 CENPWQ5EE01 88 aa10.04□□□□□ -0.8
SS18-212ENST00000579061 C14orf178Q8N769 122 aaPredicted RBP10.04□□□□□ -0.8
SS18-212ENST00000579061 KIAA1109Q2LD37 5005 aa10.04□□□□□ -0.8
SS18-212ENST00000579061 A0A087WWC5 75 aa10.03□□□□□ -0.8
SS18-212ENST00000579061 A0A087WWL8 130 aa10.03□□□□□ -0.8
SS18-212ENST00000579061 TRBV10-1A0A0K0K1A3 114 aa10.03□□□□□ -0.8
SS18-212ENST00000579061 GNG4P50150 75 aa10.03□□□□□ -0.8
SS18-212ENST00000579061 BLOC1S1P78537 153 aa10.03□□□□□ -0.8
SS18-212ENST00000579061 SPATA12Q7Z6I5 190 aa10.03□□□□□ -0.8
SS18-212ENST00000579061 OR10AG1Q8NH19 301 aa10.03□□□□□ -0.8
SS18-212ENST00000579061 DAZAP1Q96EP5 407 aaKnown RBP10.03□□□□□ -0.8
SS18-212ENST00000579061 MED9Q9NWA0 146 aa10.03□□□□□ -0.8
SS18-212ENST00000579061 TNFRSF18Q9Y5U5 241 aa10.03□□□□□ -0.8
SS18-212ENST00000579061 A0A1B0GVG6 124 aa10.02□□□□□ -0.81
SS18-212ENST00000579061 RAB19A4D1S5 217 aa10.02□□□□□ -0.81
SS18-212ENST00000579061 C19orf71A6NCJ1 209 aa10.02□□□□□ -0.81
SS18-212ENST00000579061 EREGO14944 169 aa10.02□□□□□ -0.81
SS18-212ENST00000579061 ERVFC1-1P60608 527 aa10.02□□□□□ -0.81
SS18-212ENST00000579061 RPS20P60866 119 aaKnown RBP10.02□□□□□ -0.81
SS18-212ENST00000579061 BIN3Q9NQY0 253 aa10.02□□□□□ -0.81
SS18-212ENST00000579061 Q9UF83 564 aa10.02□□□□□ -0.81
SS18-212ENST00000579061 IBA57-AS1B1ANH7 110 aa10.01□□□□□ -0.81
SS18-212ENST00000579061 RAB4BP61018 213 aa10.01□□□□□ -0.81
SS18-212ENST00000579061 SPANXN1Q5VSR9 72 aa10.01□□□□□ -0.81
SS18-212ENST00000579061 LRP1BQ9NZR2 4599 aa10□□□□□ -0.81
SS18-212ENST00000579061 TRBV20OR9-2A0A075B6H5 130 aa10□□□□□ -0.81
SS18-212ENST00000579061 RPL36AP83881 106 aaKnown RBP10□□□□□ -0.81
SS18-212ENST00000579061 ALKAL2Q6UX46 152 aa10□□□□□ -0.81
SS18-212ENST00000579061 OR10G8Q8NGN5 311 aa10□□□□□ -0.81
SS18-212ENST00000579061 LYPD6BQ8NI32 183 aa10□□□□□ -0.81
SS18-212ENST00000579061 RPL36ALQ969Q0 106 aaKnown RBP10□□□□□ -0.81
SS18-212ENST00000579061 XKRY2A2RUG3 117 aa9.99□□□□□ -0.81
SS18-212ENST00000579061 IGLC6P0CF74 106 aa9.99□□□□□ -0.81
SS18-212ENST00000579061 KRTAP10-2P60368 255 aa9.99□□□□□ -0.81
SS18-212ENST00000579061 LAGE3Q14657 143 aa9.99□□□□□ -0.81
SS18-212ENST00000579061 OR2D3Q8NGH3 330 aa9.99□□□□□ -0.81
SS18-212ENST00000579061 PGPEP1Q9NXJ5 209 aa9.99□□□□□ -0.81
SS18-212ENST00000579061 TRBV7-3A0A075B6L6 115 aa9.98□□□□□ -0.81
SS18-212ENST00000579061 CDK2AP2O75956 126 aa9.98□□□□□ -0.81
SS18-212ENST00000579061 P01737 135 aa9.98□□□□□ -0.81
SS18-212ENST00000579061 FER1L6-AS1Q8NA97 138 aa9.98□□□□□ -0.81
SS18-212ENST00000579061 A0A087WTM6 91 aa9.97□□□□□ -0.81
SS18-212ENST00000579061 TMEM250H0YL14 139 aa9.97□□□□□ -0.81
SS18-212ENST00000579061 IGHV3-30P01768 117 aa9.97□□□□□ -0.81
SS18-212ENST00000579061 IGHV3-33P01772 117 aa9.97□□□□□ -0.81
SS18-212ENST00000579061 IGHV3-30-3P0DP02 117 aa9.97□□□□□ -0.81
SS18-212ENST00000579061 IGHV3-30-5P0DP03 117 aa9.97□□□□□ -0.81
SS18-212ENST00000579061 UBE2D3P61077 147 aa9.97□□□□□ -0.81
SS18-212ENST00000579061 UBE2D2P62837 147 aa9.97□□□□□ -0.81
SS18-212ENST00000579061 CACNG7P62955 275 aa9.97□□□□□ -0.81
SS18-212ENST00000579061 ZNF56Q15929 161 aa9.97□□□□□ -0.81
SS18-212ENST00000579061 CDPF1Q6NVV7 123 aa9.97□□□□□ -0.81
SS18-212ENST00000579061 AP1S3Q96PC3 154 aa9.97□□□□□ -0.81
SS18-212ENST00000579061 DNAH5Q8TE73 4624 aa9.96□□□□□ -0.81
SS18-212ENST00000579061 MUC21A0A0G2JKD1 596 aa9.96□□□□□ -0.82
SS18-212ENST00000579061 MUC21A0A140T8X8 626 aa9.96□□□□□ -0.82
SS18-212ENST00000579061 RBFOX3A6NFN3 312 aa9.96□□□□□ -0.82
SS18-212ENST00000579061 F2Z2F3 143 aa9.96□□□□□ -0.82
SS18-212ENST00000579061 NDUFS6O75380 124 aaKnown RBP9.96□□□□□ -0.82
SS18-212ENST00000579061 SMIM17P0DL12 118 aa9.96□□□□□ -0.82
SS18-212ENST00000579061 NEXN-AS1Q8NBZ9 246 aa9.96□□□□□ -0.82
SS18-212ENST00000579061 KIF25-AS1Q9Y6Z4 181 aa9.96□□□□□ -0.82
SS18-212ENST00000579061 RYR1P21817 5038 aa9.95□□□□□ -0.82
SS18-212ENST00000579061 GZMBP10144 247 aa9.95□□□□□ -0.82
SS18-212ENST00000579061 NKX2-5P52952 324 aaPredicted RBP9.95□□□□□ -0.82
SS18-212ENST00000579061 TOR2AQ5JU69 321 aa9.95□□□□□ -0.82
SS18-212ENST00000579061 NUDT10Q8NFP7 164 aa9.95□□□□□ -0.82
SS18-212ENST00000579061 NUDT11Q96G61 164 aa9.95□□□□□ -0.82
SS18-212ENST00000579061 CHCHD7Q9BUK0 85 aa9.95□□□□□ -0.82
SS18-212ENST00000579061 HSPG2P98160 4391 aa9.94□□□□□ -0.82
SS18-212ENST00000579061 TRAV8-3A0A0A6YYJ7 113 aa9.94□□□□□ -0.82
SS18-212ENST00000579061 F5H697 171 aa9.94□□□□□ -0.82
SS18-212ENST00000579061 PSCAO43653 123 aa9.94□□□□□ -0.82
SS18-212ENST00000579061 WDR73Q6P4I2 378 aa9.94□□□□□ -0.82
SS18-212ENST00000579061 NIT1Q86X76 327 aa9.94□□□□□ -0.82
SS18-212ENST00000579061 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.94□□□□□ -0.82
SS18-212ENST00000579061 OCC1Q8TAD7 63 aa9.94□□□□□ -0.82
SS18-212ENST00000579061 TM2D2Q9BX73 214 aa9.94□□□□□ -0.82
SS18-212ENST00000579061 SSTP61278 116 aa9.93□□□□□ -0.82
SS18-212ENST00000579061 TPPP3Q9BW30 176 aa9.93□□□□□ -0.82
SS18-212ENST00000579061 Q9HAA7 133 aa9.93□□□□□ -0.82
SS18-212ENST00000579061 URGCP-MRPS24S4R325 110 aa9.93□□□□□ -0.82
SS18-212ENST00000579061 LRCOL1A6NCL2 159 aa9.92□□□□□ -0.82
SS18-212ENST00000579061 K7EN84 100 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms