RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 CFC1P0CG37 223 aa8.76□□□□□ -1.01
CLN3-238ENST00000569430 Q6ZUT4 128 aa8.76□□□□□ -1.01
CLN3-238ENST00000569430 C3orf56Q8N813 242 aa8.76□□□□□ -1.01
CLN3-238ENST00000569430 DUX5Q96PT3 197 aa8.76□□□□□ -1.01
CLN3-238ENST00000569430 DUX3Q96PT4 197 aa8.76□□□□□ -1.01
CLN3-238ENST00000569430 C15orf53Q8NAA6 179 aa8.76□□□□□ -1.01
CLN3-238ENST00000569430 TOMM7Q9P0U1 55 aa8.76□□□□□ -1.01
CLN3-238ENST00000569430 SMAD5-AS1Q9Y6J3 95 aa8.76□□□□□ -1.01
CLN3-238ENST00000569430 CENPEQ02224 2701 aa8.76□□□□□ -1.01
CLN3-238ENST00000569430 TCL1BO95988 128 aa8.76□□□□□ -1.01
CLN3-238ENST00000569430 OPRPNQ99935 248 aaPredicted RBP8.76□□□□□ -1.01
CLN3-238ENST00000569430 H3BMM0 161 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 SPINK13Q1W4C9 94 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 UBE2WQ96B02 151 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 BPESC1Q9GZL8 116 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 C11orf21Q9P2W6 132 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 GAGE12JA6NER3 117 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 GAGE7O76087 117 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 GAGE12FP0CL80 117 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 GAGE12GP0CL81 117 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 GAGE12IP0CL82 117 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 GAGE4Q13068 117 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 GATD1Q8NB37 220 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 NPBQ8NG41 125 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 MOB4Q9Y3A3 225 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 TNRC6BQ9UPQ9 1833 aaKnown RBP8.75□□□□□ -1.01
CLN3-238ENST00000569430 H3BUX3 64 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 RNASE1P07998 156 aaKnown RBP8.75□□□□□ -1.01
CLN3-238ENST00000569430 IFITM1P13164 125 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 C19orf54Q5BKX5 351 aa8.75□□□□□ -1.01
CLN3-238ENST00000569430 PHLDA1Q8WV24 401 aaPredicted RBP8.75□□□□□ -1.01
CLN3-238ENST00000569430 SMIM20Q8N5G0 67 aa8.74□□□□□ -1.01
CLN3-238ENST00000569430 A0A0J9YXV3 536 aa8.74□□□□□ -1.01
CLN3-238ENST00000569430 RBAKDNA6NC62 111 aa8.74□□□□□ -1.01
CLN3-238ENST00000569430 DNAL4O96015 105 aa8.74□□□□□ -1.01
CLN3-238ENST00000569430 TRAV12-1A0A0B4J245 112 aa8.74□□□□□ -1.01
CLN3-238ENST00000569430 LINC01548A6NM66 108 aa8.74□□□□□ -1.01
CLN3-238ENST00000569430 NDUFA11Q86Y39 141 aa8.74□□□□□ -1.01
CLN3-238ENST00000569430 MUSTN1Q8IVN3 82 aa8.74□□□□□ -1.01
CLN3-238ENST00000569430 OR13C6PQ8NH95 151 aa8.74□□□□□ -1.01
CLN3-238ENST00000569430 DYNLRB2Q8TF09 96 aa8.74□□□□□ -1.01
CLN3-238ENST00000569430 TOMM6Q96B49 74 aa8.74□□□□□ -1.01
CLN3-238ENST00000569430 Q8N9W7 124 aa8.73□□□□□ -1.01
CLN3-238ENST00000569430 TMEM141Q96I45 108 aa8.73□□□□□ -1.01
CLN3-238ENST00000569430 NOTCH2Q04721 2471 aa8.73□□□□□ -1.01
CLN3-238ENST00000569430 MYO18BQ8IUG5 2567 aa8.73□□□□□ -1.01
CLN3-238ENST00000569430 RASL10AQ92737 203 aa8.73□□□□□ -1.01
CLN3-238ENST00000569430 NDUFA12Q9UI09 145 aa8.72□□□□□ -1.01
CLN3-238ENST00000569430 ATP5J2P56134 94 aa8.72□□□□□ -1.01
CLN3-238ENST00000569430 PIP4P2Q8N4L2 257 aa8.72□□□□□ -1.01
CLN3-238ENST00000569430 LINC01587Q99440 93 aa8.72□□□□□ -1.01
CLN3-238ENST00000569430 PRSS47A8MTI9 375 aa8.72□□□□□ -1.01
CLN3-238ENST00000569430 UBE2E1P51965 193 aa8.72□□□□□ -1.01
CLN3-238ENST00000569430 XGP55808 180 aa8.72□□□□□ -1.01
CLN3-238ENST00000569430 SUMO4Q6EEV6 95 aa8.71□□□□□ -1.01
CLN3-238ENST00000569430 LY6G5BQ8NDX9 201 aa8.71□□□□□ -1.01
CLN3-238ENST00000569430 DAZ1Q9NQZ3 744 aaKnown RBP8.71□□□□□ -1.01
CLN3-238ENST00000569430 IGHV3-38A0A0C4DH36 116 aa8.71□□□□□ -1.02
CLN3-238ENST00000569430 ITLN2Q8WWU7 325 aaPredicted RBP8.71□□□□□ -1.02
CLN3-238ENST00000569430 CELSR1Q9NYQ6 3014 aa8.71□□□□□ -1.02
CLN3-238ENST00000569430 TCTEX1D4Q5JR98 221 aa8.71□□□□□ -1.02
CLN3-238ENST00000569430 NRACQ8N912 160 aa8.71□□□□□ -1.02
CLN3-238ENST00000569430 CARD19Q96LW7 228 aa8.71□□□□□ -1.02
CLN3-238ENST00000569430 CUBNO60494 3623 aa8.71□□□□□ -1.02
CLN3-238ENST00000569430 MRPS12O15235 138 aaKnown RBP8.7□□□□□ -1.02
CLN3-238ENST00000569430 NEXN-AS1Q8NBZ9 246 aa8.7□□□□□ -1.02
CLN3-238ENST00000569430 HOXB4P17483 251 aaPredicted RBP8.7□□□□□ -1.02
CLN3-238ENST00000569430 UNQ9165/PRO28630Q6UXU0 137 aa8.7□□□□□ -1.02
CLN3-238ENST00000569430 SPATA25Q9BR10 227 aa8.7□□□□□ -1.02
CLN3-238ENST00000569430 TRAV13-1A0A0B4J241 112 aa8.7□□□□□ -1.02
CLN3-238ENST00000569430 IGHV3-16A0A0C4DH30 117 aa8.7□□□□□ -1.02
CLN3-238ENST00000569430 MRGPRG-AS1Q2M3A8 158 aa8.7□□□□□ -1.02
CLN3-238ENST00000569430 LINC01620Q4KN68 170 aa8.7□□□□□ -1.02
CLN3-238ENST00000569430 C9orf47Q6ZRZ4 202 aa8.7□□□□□ -1.02
CLN3-238ENST00000569430 YAE1D1Q9NRH1 226 aa8.7□□□□□ -1.02
CLN3-238ENST00000569430 TRBV7-3A0A075B6L6 115 aa8.69□□□□□ -1.02
CLN3-238ENST00000569430 TRBV7-9A0A0J9YWB2 115 aa8.69□□□□□ -1.02
CLN3-238ENST00000569430 UBE2L6O14933 153 aa8.69□□□□□ -1.02
CLN3-238ENST00000569430 TRBV12-3P01733 135 aa8.69□□□□□ -1.02
CLN3-238ENST00000569430 C16orf54Q6UWD8 224 aa8.69□□□□□ -1.02
CLN3-238ENST00000569430 DAND5Q8N907 189 aa8.69□□□□□ -1.02
CLN3-238ENST00000569430 FAM223BA6NKX1 122 aa8.69□□□□□ -1.02
CLN3-238ENST00000569430 RS1O15537 224 aa8.69□□□□□ -1.02
CLN3-238ENST00000569430 ZFP36P26651 326 aaKnown RBP8.69□□□□□ -1.02
CLN3-238ENST00000569430 CFAP126Q5VTH2 177 aa8.69□□□□□ -1.02
CLN3-238ENST00000569430 FAM223AQ8IWN6 122 aa8.69□□□□□ -1.02
CLN3-238ENST00000569430 A0A0J9YY99 117 aa8.68□□□□□ -1.02
CLN3-238ENST00000569430 CCDC140Q96MF4 163 aa8.68□□□□□ -1.02
CLN3-238ENST00000569430 I3L3M4 83 aa8.68□□□□□ -1.02
CLN3-238ENST00000569430 PIP4P1Q86T03 277 aa8.68□□□□□ -1.02
CLN3-238ENST00000569430 MSRB2Q9Y3D2 182 aa8.68□□□□□ -1.02
CLN3-238ENST00000569430 ZFYVE26Q68DK2 2539 aa8.68□□□□□ -1.02
CLN3-238ENST00000569430 SYNJ2BPP57105 145 aa8.68□□□□□ -1.02
CLN3-238ENST00000569430 Q6ZS46 218 aa8.68□□□□□ -1.02
CLN3-238ENST00000569430 ATP6V0E2Q8NHE4 81 aa8.68□□□□□ -1.02
CLN3-238ENST00000569430 PIMREGQ9BSJ6 248 aa8.68□□□□□ -1.02
CLN3-238ENST00000569430 LENEPQ9Y5L5 61 aa8.68□□□□□ -1.02
CLN3-238ENST00000569430 IGHV1-69DA0A0B4J2H0 117 aa8.67□□□□□ -1.02
CLN3-238ENST00000569430 CENPVL3A0A0U1RRI6 287 aa8.67□□□□□ -1.02
CLN3-238ENST00000569430 TEX49A0A1B0GTD5 131 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms