RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SMDT1Q9H4I9 107 aa8.95□□□□□ -0.98
CLK3-224ENST00000568605 RPP21Q9H633 154 aaKnown RBP8.95□□□□□ -0.98
CLK3-224ENST00000568605 DNAH10Q8IVF4 4471 aa8.94□□□□□ -0.98
CLK3-224ENST00000568605 LOC100131303A0A0U1RQF7 123 aa8.94□□□□□ -0.98
CLK3-224ENST00000568605 IGLC6P0CF74 106 aa8.94□□□□□ -0.98
CLK3-224ENST00000568605 TIRAPP58753 221 aa8.94□□□□□ -0.98
CLK3-224ENST00000568605 RAB14P61106 215 aa8.94□□□□□ -0.98
CLK3-224ENST00000568605 PEA15Q15121 130 aa8.94□□□□□ -0.98
CLK3-224ENST00000568605 ZNF56Q15929 161 aa8.94□□□□□ -0.98
CLK3-224ENST00000568605 UFSP1Q6NVU6 142 aa8.94□□□□□ -0.98
CLK3-224ENST00000568605 ZNF575Q86XF7 245 aa8.94□□□□□ -0.98
CLK3-224ENST00000568605 OCC1Q8TAD7 63 aa8.94□□□□□ -0.98
CLK3-224ENST00000568605 SAMD10Q9BYL1 202 aa8.94□□□□□ -0.98
CLK3-224ENST00000568605 JPT2Q9H910 190 aa8.94□□□□□ -0.98
CLK3-224ENST00000568605 K7EN84 100 aa8.93□□□□□ -0.98
CLK3-224ENST00000568605 SRP19P09132 144 aaKnown RBP8.93□□□□□ -0.98
CLK3-224ENST00000568605 TRGC1P0CF51 173 aa8.93□□□□□ -0.98
CLK3-224ENST00000568605 GZMBP10144 247 aa8.93□□□□□ -0.98
CLK3-224ENST00000568605 FAM74A3Q4VXF1 159 aa8.93□□□□□ -0.98
CLK3-224ENST00000568605 NUDT10Q8NFP7 164 aa8.93□□□□□ -0.98
CLK3-224ENST00000568605 ATP6V0E2Q8NHE4 81 aa8.93□□□□□ -0.98
CLK3-224ENST00000568605 NUDT11Q96G61 164 aa8.93□□□□□ -0.98
CLK3-224ENST00000568605 RNASE7Q9H1E1 156 aaKnown RBP8.93□□□□□ -0.98
CLK3-224ENST00000568605 TRAV9-2A0A087WT02 112 aa8.92□□□□□ -0.98
CLK3-224ENST00000568605 TRAV8-6A0A0B4J262 113 aa8.92□□□□□ -0.98
CLK3-224ENST00000568605 TRBV10-1A0A0K0K1A3 114 aa8.92□□□□□ -0.98
CLK3-224ENST00000568605 K7EP13 123 aa8.92□□□□□ -0.98
CLK3-224ENST00000568605 GATCO43716 136 aaKnown RBP8.92□□□□□ -0.98
CLK3-224ENST00000568605 CRYGDP07320 174 aa8.92□□□□□ -0.98
CLK3-224ENST00000568605 BTF3P20290 206 aaKnown RBP8.92□□□□□ -0.98
CLK3-224ENST00000568605 CTRLP40313 264 aa8.92□□□□□ -0.98
CLK3-224ENST00000568605 ERVFC1-1P60608 527 aa8.92□□□□□ -0.98
CLK3-224ENST00000568605 RAB4BP61018 213 aa8.92□□□□□ -0.98
CLK3-224ENST00000568605 FAM231DQ6ZW35 169 aa8.92□□□□□ -0.98
CLK3-224ENST00000568605 C6orf223Q8N319 242 aa8.92□□□□□ -0.98
CLK3-224ENST00000568605 MUC21A0A0G2JKD1 596 aa8.91□□□□□ -0.98
CLK3-224ENST00000568605 MUC21A0A140T8X8 626 aa8.91□□□□□ -0.98
CLK3-224ENST00000568605 GAGE12JA6NER3 117 aa8.91□□□□□ -0.98
CLK3-224ENST00000568605 EVI2AP22794 236 aa8.91□□□□□ -0.98
CLK3-224ENST00000568605 RPL36AP83881 106 aaKnown RBP8.91□□□□□ -0.98
CLK3-224ENST00000568605 GAGE1Q13065 139 aa8.91□□□□□ -0.98
CLK3-224ENST00000568605 GAGE4Q13068 117 aa8.91□□□□□ -0.98
CLK3-224ENST00000568605 GAGE5Q13069 117 aa8.91□□□□□ -0.98
CLK3-224ENST00000568605 GAGE13Q4V321 117 aa8.91□□□□□ -0.98
CLK3-224ENST00000568605 CT83Q5H943 113 aa8.91□□□□□ -0.98
CLK3-224ENST00000568605 OR10J3Q5JRS4 329 aa8.91□□□□□ -0.98
CLK3-224ENST00000568605 LINC01551Q86U37 167 aa8.91□□□□□ -0.98
CLK3-224ENST00000568605 C14orf178Q8N769 122 aaPredicted RBP8.91□□□□□ -0.98
CLK3-224ENST00000568605 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.91□□□□□ -0.98
CLK3-224ENST00000568605 RPL36ALQ969Q0 106 aaKnown RBP8.91□□□□□ -0.98
CLK3-224ENST00000568605 GTSF1LQ9H1H1 148 aa8.91□□□□□ -0.98
CLK3-224ENST00000568605 PRSS29PA6NIE9 313 aa8.9□□□□□ -0.98
CLK3-224ENST00000568605 A8MWL6 223 aa8.9□□□□□ -0.98
CLK3-224ENST00000568605 F5H697 171 aa8.9□□□□□ -0.98
CLK3-224ENST00000568605 H7C1H1 209 aa8.9□□□□□ -0.98
CLK3-224ENST00000568605 LINC00694P0DN24 101 aa8.9□□□□□ -0.98
CLK3-224ENST00000568605 SSTP61278 116 aa8.9□□□□□ -0.98
CLK3-224ENST00000568605 LYZL1Q6UWQ5 148 aa8.9□□□□□ -0.98
CLK3-224ENST00000568605 Q6ZSN1 163 aa8.9□□□□□ -0.98
CLK3-224ENST00000568605 C10orf126Q8N4M7 172 aa8.9□□□□□ -0.98
CLK3-224ENST00000568605 C15orf54Q8N8G6 183 aa8.9□□□□□ -0.98
CLK3-224ENST00000568605 BORCS7Q96B45 105 aa8.9□□□□□ -0.98
CLK3-224ENST00000568605 DNAH2Q9P225 4427 aa8.9□□□□□ -0.99
CLK3-224ENST00000568605 A0A087WWC5 75 aa8.89□□□□□ -0.99
CLK3-224ENST00000568605 RTL8CO15255 209 aa8.89□□□□□ -0.99
CLK3-224ENST00000568605 MGPP08493 103 aa8.89□□□□□ -0.99
CLK3-224ENST00000568605 LELP1Q5T871 98 aa8.89□□□□□ -0.99
CLK3-224ENST00000568605 WDR73Q6P4I2 378 aa8.89□□□□□ -0.99
CLK3-224ENST00000568605 WFDC10BQ8IUB3 73 aa8.89□□□□□ -0.99
CLK3-224ENST00000568605 NAT8Q9UHE5 227 aa8.89□□□□□ -0.99
CLK3-224ENST00000568605 FRAS1Q86XX4 4008 aa8.89□□□□□ -0.99
CLK3-224ENST00000568605 TRBV7-3A0A075B6L6 115 aa8.88□□□□□ -0.99
CLK3-224ENST00000568605 IGHV3-38A0A0C4DH36 116 aa8.88□□□□□ -0.99
CLK3-224ENST00000568605 DNAH10OSP0CZ25 163 aa8.88□□□□□ -0.99
CLK3-224ENST00000568605 TMEM241Q24JQ0 296 aa8.88□□□□□ -0.99
CLK3-224ENST00000568605 LCE2DQ5TA82 110 aaPredicted RBP8.88□□□□□ -0.99
CLK3-224ENST00000568605 SMIM15Q7Z3B0 74 aa8.88□□□□□ -0.99
CLK3-224ENST00000568605 CNFNQ9BYD5 112 aa8.88□□□□□ -0.99
CLK3-224ENST00000568605 DPH3P1Q9H4G8 78 aa8.88□□□□□ -0.99
CLK3-224ENST00000568605 OSTCQ9NRP0 149 aa8.88□□□□□ -0.99
CLK3-224ENST00000568605 NTF3P20783 257 aa8.87□□□□□ -0.99
CLK3-224ENST00000568605 TWIST1Q15672 202 aa8.87□□□□□ -0.99
CLK3-224ENST00000568605 ADIRFQ15847 76 aa8.87□□□□□ -0.99
CLK3-224ENST00000568605 NFE4Q86UQ8 179 aa8.87□□□□□ -0.99
CLK3-224ENST00000568605 OR10G8Q8NGN5 311 aa8.87□□□□□ -0.99
CLK3-224ENST00000568605 KRTAP1-5Q9BYS1 174 aa8.87□□□□□ -0.99
CLK3-224ENST00000568605 LINC00315P59091 139 aa8.86□□□□□ -0.99
CLK3-224ENST00000568605 LINC01556Q5JQF7 62 aa8.86□□□□□ -0.99
CLK3-224ENST00000568605 ISOC2Q96AB3 205 aa8.86□□□□□ -0.99
CLK3-224ENST00000568605 GFRA4Q9GZZ7 299 aa8.86□□□□□ -0.99
CLK3-224ENST00000568605 KIF25-AS1Q9Y6Z4 181 aa8.86□□□□□ -0.99
CLK3-224ENST00000568605 EPPK1P58107 5090 aaKnown RBP8.86□□□□□ -0.99
CLK3-224ENST00000568605 FAM231BA6NCW3 169 aa8.85□□□□□ -0.99
CLK3-224ENST00000568605 UBE2D3P61077 147 aa8.85□□□□□ -0.99
CLK3-224ENST00000568605 RPL23P62829 140 aaKnown RBP8.85□□□□□ -0.99
CLK3-224ENST00000568605 UBE2D2P62837 147 aa8.85□□□□□ -0.99
CLK3-224ENST00000568605 CLLU1Q5K131 121 aa8.85□□□□□ -0.99
CLK3-224ENST00000568605 NEXN-AS1Q8NBZ9 246 aa8.85□□□□□ -0.99
CLK3-224ENST00000568605 TSKUQ8WUA8 353 aa8.85□□□□□ -0.99
CLK3-224ENST00000568605 GTSF1Q8WW33 167 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms