RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 HLA-DRB4P13762 266 aa14.96□□□□□ -0.01
CLN3-230ENST00000568076 BVES-AS1Q5T3Y7 98 aa14.96□□□□□ -0.01
CLN3-230ENST00000568076 BOD1L2Q8IYS8 172 aa14.96□□□□□ -0.01
CLN3-230ENST00000568076 HLA-DRB4X5D2U9 266 aa14.96□□□□□ -0.01
CLN3-230ENST00000568076 NF1P21359 2839 aa14.96□□□□□ -0.02
CLN3-230ENST00000568076 H3BMM0 161 aa14.95□□□□□ -0.02
CLN3-230ENST00000568076 PPP1R17O96001 155 aa14.95□□□□□ -0.02
CLN3-230ENST00000568076 C11orf44Q8N8P7 122 aa14.95□□□□□ -0.02
CLN3-230ENST00000568076 TOMM6Q96B49 74 aa14.95□□□□□ -0.02
CLN3-230ENST00000568076 RAX2Q96IS3 184 aa14.95□□□□□ -0.02
CLN3-230ENST00000568076 CSTL1Q9H114 145 aa14.95□□□□□ -0.02
CLN3-230ENST00000568076 ITPR2Q14571 2701 aa14.95□□□□□ -0.02
CLN3-230ENST00000568076 HELZ2Q9BYK8 2649 aaKnown RBP14.95□□□□□ -0.02
CLN3-230ENST00000568076 K7EMI3 77 aa14.94□□□□□ -0.02
CLN3-230ENST00000568076 IGKCP01834 107 aa14.94□□□□□ -0.02
CLN3-230ENST00000568076 DEFB114Q30KQ6 69 aa14.94□□□□□ -0.02
CLN3-230ENST00000568076 Q6ZVH6 145 aa14.94□□□□□ -0.02
CLN3-230ENST00000568076 NEGR1Q7Z3B1 354 aa14.94□□□□□ -0.02
CLN3-230ENST00000568076 YAE1D1Q9NRH1 226 aa14.94□□□□□ -0.02
CLN3-230ENST00000568076 DYNLRB2Q8TF09 96 aa14.94□□□□□ -0.02
CLN3-230ENST00000568076 ANK3Q12955 4377 aaKnown RBP14.93□□□□□ -0.02
CLN3-230ENST00000568076 PCP2Q8IVA1 136 aa14.93□□□□□ -0.02
CLN3-230ENST00000568076 MRPL35Q9NZE8 188 aaKnown RBP14.93□□□□□ -0.02
CLN3-230ENST00000568076 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.93□□□□□ -0.02
CLN3-230ENST00000568076 DLEU1O43261 78 aa14.93□□□□□ -0.02
CLN3-230ENST00000568076 DPM2O94777 84 aa14.93□□□□□ -0.02
CLN3-230ENST00000568076 CRYGDP07320 174 aa14.93□□□□□ -0.02
CLN3-230ENST00000568076 CD28P10747 220 aa14.93□□□□□ -0.02
CLN3-230ENST00000568076 NMUP48645 174 aa14.93□□□□□ -0.02
CLN3-230ENST00000568076 CD300EQ496F6 205 aaPredicted RBP14.93□□□□□ -0.02
CLN3-230ENST00000568076 FAM74A4Q5TZK3 123 aa14.93□□□□□ -0.02
CLN3-230ENST00000568076 MAP6D1Q9H9H5 199 aa14.93□□□□□ -0.02
CLN3-230ENST00000568076 A0A087WX48 190 aa14.92□□□□□ -0.02
CLN3-230ENST00000568076 IGKV2D-26A0A0A0MRZ7 120 aa14.92□□□□□ -0.02
CLN3-230ENST00000568076 F5H697 171 aa14.92□□□□□ -0.02
CLN3-230ENST00000568076 POLR2KP53803 58 aaKnown RBP14.92□□□□□ -0.02
CLN3-230ENST00000568076 RPL32P62910 135 aaKnown RBP14.92□□□□□ -0.02
CLN3-230ENST00000568076 C12orf54Q6X4T0 127 aa14.92□□□□□ -0.02
CLN3-230ENST00000568076 SYT8Q8NBV8 401 aa14.92□□□□□ -0.02
CLN3-230ENST00000568076 A0A1W2PRX2 142 aa14.91□□□□□ -0.02
CLN3-230ENST00000568076 C2orf66Q6UXQ4 117 aa14.91□□□□□ -0.02
CLN3-230ENST00000568076 SCGB3A1Q96QR1 104 aa14.91□□□□□ -0.02
CLN3-230ENST00000568076 ACANP16112 2415 aa14.91□□□□□ -0.02
CLN3-230ENST00000568076 FHL3Q13643 280 aa14.91□□□□□ -0.02
CLN3-230ENST00000568076 TMEM160Q9NX00 188 aa14.91□□□□□ -0.02
CLN3-230ENST00000568076 TRGV11A0A075B6L2 103 aa14.9□□□□□ -0.02
CLN3-230ENST00000568076 CBY3A6NI87 242 aa14.9□□□□□ -0.02
CLN3-230ENST00000568076 ZNF256Q9Y2P7 627 aaPredicted RBP14.9□□□□□ -0.02
CLN3-230ENST00000568076 UNC79Q9P2D8 2635 aa14.89□□□□□ -0.03
CLN3-230ENST00000568076 GAGE1Q13065 139 aa14.89□□□□□ -0.03
CLN3-230ENST00000568076 ZC2HC1BQ5TFG8 222 aa14.89□□□□□ -0.03
CLN3-230ENST00000568076 MORN3Q6PF18 240 aaPredicted RBP14.89□□□□□ -0.03
CLN3-230ENST00000568076 GTSCR1Q86UQ5 136 aa14.89□□□□□ -0.03
CLN3-230ENST00000568076 DEFB104AQ8WTQ1 72 aa14.89□□□□□ -0.03
CLN3-230ENST00000568076 TRAV12-1A0A0B4J245 112 aa14.89□□□□□ -0.03
CLN3-230ENST00000568076 PRM2P04554 102 aa14.89□□□□□ -0.03
CLN3-230ENST00000568076 ZNF876PQ49A33 203 aa14.89□□□□□ -0.03
CLN3-230ENST00000568076 NPSP0C0P6 89 aa14.88□□□□□ -0.03
CLN3-230ENST00000568076 HTN1P15515 57 aa14.88□□□□□ -0.03
CLN3-230ENST00000568076 LINC01006Q8NI28 216 aa14.88□□□□□ -0.03
CLN3-230ENST00000568076 COX11Q9Y6N1 276 aa14.88□□□□□ -0.03
CLN3-230ENST00000568076 M0QY20 66 aa14.87□□□□□ -0.03
CLN3-230ENST00000568076 RNASE1P07998 156 aaKnown RBP14.87□□□□□ -0.03
CLN3-230ENST00000568076 ZNF56Q15929 161 aa14.87□□□□□ -0.03
CLN3-230ENST00000568076 NEXN-AS1Q8NBZ9 246 aa14.87□□□□□ -0.03
CLN3-230ENST00000568076 TTTY13Q9BZ97 58 aa14.87□□□□□ -0.03
CLN3-230ENST00000568076 TRBV6-5A0A0K0K1A5 114 aa14.87□□□□□ -0.03
CLN3-230ENST00000568076 SDHAF1A6NFY7 115 aa14.87□□□□□ -0.03
CLN3-230ENST00000568076 CCL24O00175 119 aa14.87□□□□□ -0.03
CLN3-230ENST00000568076 SPAG8Q99932 426 aaPredicted RBP14.87□□□□□ -0.03
CLN3-230ENST00000568076 CITED2Q99967 270 aaPredicted RBP14.87□□□□□ -0.03
CLN3-230ENST00000568076 ORAOV1Q8WV07 137 aa14.86□□□□□ -0.03
CLN3-230ENST00000568076 BAALCQ8WXS3 180 aa14.86□□□□□ -0.03
CLN3-230ENST00000568076 VCYO14598 125 aa14.85□□□□□ -0.03
CLN3-230ENST00000568076 SIVA1O15304 175 aa14.85□□□□□ -0.03
CLN3-230ENST00000568076 TMEM97Q5BJF2 176 aa14.85□□□□□ -0.03
CLN3-230ENST00000568076 ZFP2Q6ZN57 461 aa14.85□□□□□ -0.03
CLN3-230ENST00000568076 C16orf95Q9H693 158 aa14.85□□□□□ -0.03
CLN3-230ENST00000568076 TRBV27A0A0K0K1C4 114 aa14.85□□□□□ -0.03
CLN3-230ENST00000568076 F8VRH5 84 aa14.85□□□□□ -0.03
CLN3-230ENST00000568076 H7C1H1 209 aa14.85□□□□□ -0.03
CLN3-230ENST00000568076 TAX1BP3O14907 124 aa14.85□□□□□ -0.03
CLN3-230ENST00000568076 ERASQ7Z444 233 aa14.85□□□□□ -0.03
CLN3-230ENST00000568076 PLNP26678 52 aa14.84□□□□□ -0.03
CLN3-230ENST00000568076 ODF3L2Q3SX64 289 aa14.84□□□□□ -0.03
CLN3-230ENST00000568076 KIR2DL4Q99706 377 aa14.84□□□□□ -0.03
CLN3-230ENST00000568076 TP53TG1Q9Y2A0 90 aa14.84□□□□□ -0.03
CLN3-230ENST00000568076 CHTOPQ9Y3Y2 248 aaKnown RBP14.84□□□□□ -0.03
CLN3-230ENST00000568076 CYSLTR1Q9Y271 337 aa14.83□□□□□ -0.04
CLN3-230ENST00000568076 TSHBP01222 138 aa14.82□□□□□ -0.04
CLN3-230ENST00000568076 TSSC4Q9Y5U2 329 aaPredicted RBP14.82□□□□□ -0.04
CLN3-230ENST00000568076 TRAV25A0A0B4J276 109 aa14.82□□□□□ -0.04
CLN3-230ENST00000568076 RPL39P62891 51 aaKnown RBP14.82□□□□□ -0.04
CLN3-230ENST00000568076 PRSS29PA6NIE9 313 aa14.81□□□□□ -0.04
CLN3-230ENST00000568076 IGIPA6NJ69 53 aa14.81□□□□□ -0.04
CLN3-230ENST00000568076 TRPT1Q86TN4 253 aaKnown RBP14.81□□□□□ -0.04
CLN3-230ENST00000568076 MTORP42345 2549 aa14.81□□□□□ -0.04
CLN3-230ENST00000568076 RIPPLY3P57055 190 aa14.8□□□□□ -0.04
CLN3-230ENST00000568076 HSD52Q0P140 79 aa14.8□□□□□ -0.04
CLN3-230ENST00000568076 SMR3AQ99954 134 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms