RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 OR11H4Q8NGC9 324 aa11.29□□□□□ -0.6
CLN3-216ENST00000565316 SFRP2Q96HF1 295 aa11.29□□□□□ -0.6
CLN3-216ENST00000565316 TRBV6-1A0A0K0K1D8 114 aa11.28□□□□□ -0.6
CLN3-216ENST00000565316 M0R036 132 aa11.28□□□□□ -0.6
CLN3-216ENST00000565316 LECT2O14960 151 aa11.28□□□□□ -0.6
CLN3-216ENST00000565316 ZNF674Q2M3X9 581 aa11.28□□□□□ -0.6
CLN3-216ENST00000565316 AKR1C8PQ5T2L2 129 aa11.28□□□□□ -0.6
CLN3-216ENST00000565316 FMC1Q96HJ9 113 aa11.28□□□□□ -0.6
CLN3-216ENST00000565316 GRIFINA4D1Z8 144 aa11.27□□□□□ -0.61
CLN3-216ENST00000565316 FHITP49789 147 aa11.27□□□□□ -0.61
CLN3-216ENST00000565316 LINC01559Q495D7 138 aa11.27□□□□□ -0.61
CLN3-216ENST00000565316 BAALCQ8WXS3 180 aa11.27□□□□□ -0.61
CLN3-216ENST00000565316 TCEAL7Q9BRU2 100 aa11.27□□□□□ -0.61
CLN3-216ENST00000565316 G3V3Q6 166 aa11.26□□□□□ -0.61
CLN3-216ENST00000565316 SEC11BP0C7V7 166 aa11.26□□□□□ -0.61
CLN3-216ENST00000565316 RMI2Q96E14 147 aa11.26□□□□□ -0.61
CLN3-216ENST00000565316 CYTL1Q9NRR1 136 aa11.26□□□□□ -0.61
CLN3-216ENST00000565316 PHLDA3Q9Y5J5 127 aa11.26□□□□□ -0.61
CLN3-216ENST00000565316 A0A087WWL8 130 aa11.25□□□□□ -0.61
CLN3-216ENST00000565316 TRBV10-1A0A0K0K1A3 114 aa11.25□□□□□ -0.61
CLN3-216ENST00000565316 MAP1LC3B2A6NCE7 125 aa11.25□□□□□ -0.61
CLN3-216ENST00000565316 LTAP01374 205 aa11.25□□□□□ -0.61
CLN3-216ENST00000565316 PLA2G1BP04054 148 aaKnown RBP11.25□□□□□ -0.61
CLN3-216ENST00000565316 TPT1P13693 172 aaKnown RBP11.25□□□□□ -0.61
CLN3-216ENST00000565316 FAM74A4Q5TZK3 123 aa11.25□□□□□ -0.61
CLN3-216ENST00000565316 DNAJC30Q96LL9 226 aa11.25□□□□□ -0.61
CLN3-216ENST00000565316 CHCHD7Q9BUK0 85 aa11.25□□□□□ -0.61
CLN3-216ENST00000565316 MAP1LC3BQ9GZQ8 125 aa11.25□□□□□ -0.61
CLN3-216ENST00000565316 URGCP-MRPS24S4R325 110 aa11.25□□□□□ -0.61
CLN3-216ENST00000565316 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.24□□□□□ -0.61
CLN3-216ENST00000565316 UBE2G1P62253 170 aa11.24□□□□□ -0.61
CLN3-216ENST00000565316 ZFP82Q8N141 532 aa11.24□□□□□ -0.61
CLN3-216ENST00000565316 Q8N976 141 aa11.24□□□□□ -0.61
CLN3-216ENST00000565316 M0R381 172 aa11.23□□□□□ -0.61
CLN3-216ENST00000565316 UBE2D3P61077 147 aa11.23□□□□□ -0.61
CLN3-216ENST00000565316 UBE2D2P62837 147 aa11.23□□□□□ -0.61
CLN3-216ENST00000565316 ATRAIDQ6UW56 229 aa11.23□□□□□ -0.61
CLN3-216ENST00000565316 LINC00528Q8N1L1 170 aa11.23□□□□□ -0.61
CLN3-216ENST00000565316 KLK12Q9UKR0 248 aa11.23□□□□□ -0.61
CLN3-216ENST00000565316 IGKV2D-24A0A075B6R9 120 aa11.22□□□□□ -0.61
CLN3-216ENST00000565316 TMSB15BA0A087X1C1 80 aa11.22□□□□□ -0.61
CLN3-216ENST00000565316 ELOBQ15370 118 aa11.22□□□□□ -0.61
CLN3-216ENST00000565316 OR10G8Q8NGN5 311 aa11.22□□□□□ -0.61
CLN3-216ENST00000565316 TRBV7-3A0A075B6L6 115 aa11.21□□□□□ -0.61
CLN3-216ENST00000565316 A0A087WX48 190 aa11.21□□□□□ -0.61
CLN3-216ENST00000565316 RPL36AP83881 106 aaKnown RBP11.21□□□□□ -0.61
CLN3-216ENST00000565316 CST9LP1Q5W188 147 aa11.21□□□□□ -0.61
CLN3-216ENST00000565316 STOML3Q8TAV4 291 aa11.21□□□□□ -0.61
CLN3-216ENST00000565316 RPL36ALQ969Q0 106 aaKnown RBP11.21□□□□□ -0.61
CLN3-216ENST00000565316 UBE2WQ96B02 151 aa11.21□□□□□ -0.61
CLN3-216ENST00000565316 RBFOX3A6NFN3 312 aa11.2□□□□□ -0.62
CLN3-216ENST00000565316 KRTAP29-1A8MX34 341 aaPredicted RBP11.2□□□□□ -0.62
CLN3-216ENST00000565316 AKR1C3P42330 323 aa11.2□□□□□ -0.62
CLN3-216ENST00000565316 LINC01620Q4KN68 170 aa11.2□□□□□ -0.62
CLN3-216ENST00000565316 SCXQ7RTU7 201 aa11.2□□□□□ -0.62
CLN3-216ENST00000565316 J3QL48 77 aa11.19□□□□□ -0.62
CLN3-216ENST00000565316 ARPC5O15511 151 aa11.19□□□□□ -0.62
CLN3-216ENST00000565316 CXCL1P09341 107 aa11.19□□□□□ -0.62
CLN3-216ENST00000565316 RAB4BP61018 213 aa11.19□□□□□ -0.62
CLN3-216ENST00000565316 PRR27Q6MZM9 219 aa11.19□□□□□ -0.62
CLN3-216ENST00000565316 CHAC1Q9BUX1 264 aa11.19□□□□□ -0.62
CLN3-216ENST00000565316 LRP1Q07954 4544 aaKnown RBP11.19□□□□□ -0.62
CLN3-216ENST00000565316 PAGE4O60829 102 aa11.18□□□□□ -0.62
CLN3-216ENST00000565316 S100A9P06702 114 aaKnown RBP11.18□□□□□ -0.62
CLN3-216ENST00000565316 Q0VG73 95 aa11.18□□□□□ -0.62
CLN3-216ENST00000565316 KCNIP4Q6PIL6 250 aa11.18□□□□□ -0.62
CLN3-216ENST00000565316 DEFB104AQ8WTQ1 72 aa11.18□□□□□ -0.62
CLN3-216ENST00000565316 MBD3L1Q8WWY6 194 aa11.18□□□□□ -0.62
CLN3-216ENST00000565316 MLST8Q9BVC4 326 aa11.18□□□□□ -0.62
CLN3-216ENST00000565316 TRBV6-8A0A0A6YYG3 113 aa11.17□□□□□ -0.62
CLN3-216ENST00000565316 SSBP4Q9BWG4 385 aaPredicted RBP11.17□□□□□ -0.62
CLN3-216ENST00000565316 FAT3Q8TDW7 4589 aa11.16□□□□□ -0.62
CLN3-216ENST00000565316 KRTAP10-4P60372 401 aaPredicted RBP11.16□□□□□ -0.62
CLN3-216ENST00000565316 ENHOQ6UWT2 76 aa11.16□□□□□ -0.62
CLN3-216ENST00000565316 NEXN-AS1Q8NBZ9 246 aa11.16□□□□□ -0.62
CLN3-216ENST00000565316 OR10AG1Q8NH19 301 aa11.16□□□□□ -0.62
CLN3-216ENST00000565316 SNAI2O43623 268 aa11.15□□□□□ -0.62
CLN3-216ENST00000565316 RPL19P84098 196 aaKnown RBP11.15□□□□□ -0.62
CLN3-216ENST00000565316 KCNRGQ8N5I3 272 aa11.15□□□□□ -0.62
CLN3-216ENST00000565316 SFT2D1Q8WV19 159 aa11.15□□□□□ -0.62
CLN3-216ENST00000565316 TMEM262E9PQX1 116 aa11.14□□□□□ -0.63
CLN3-216ENST00000565316 OR5AL1P0C617 328 aa11.14□□□□□ -0.63
CLN3-216ENST00000565316 ZNF345Q14585 488 aa11.14□□□□□ -0.63
CLN3-216ENST00000565316 C14orf177Q52M58 125 aa11.14□□□□□ -0.63
CLN3-216ENST00000565316 CIRBP-AS1Q8TBR5 109 aa11.14□□□□□ -0.63
CLN3-216ENST00000565316 C1orf43Q9BWL3 253 aa11.14□□□□□ -0.63
CLN3-216ENST00000565316 ZNF471Q9BX82 626 aaPredicted RBP11.14□□□□□ -0.63
CLN3-216ENST00000565316 SCO2A0A1W2PP80 73 aa11.13□□□□□ -0.63
CLN3-216ENST00000565316 UMAD1C9J7I0 102 aa11.13□□□□□ -0.63
CLN3-216ENST00000565316 ZNF56Q15929 161 aa11.13□□□□□ -0.63
CLN3-216ENST00000565316 MPV17L2Q567V2 206 aa11.13□□□□□ -0.63
CLN3-216ENST00000565316 BAGE2Q86Y30 109 aa11.13□□□□□ -0.63
CLN3-216ENST00000565316 SMLR1H3BR10 107 aa11.12□□□□□ -0.63
CLN3-216ENST00000565316 PKIAP61925 76 aa11.12□□□□□ -0.63
CLN3-216ENST00000565316 RGS21Q2M5E4 152 aa11.12□□□□□ -0.63
CLN3-216ENST00000565316 C15orf54Q8N8G6 183 aa11.12□□□□□ -0.63
CLN3-216ENST00000565316 FAM213BQ8TBF2 198 aa11.12□□□□□ -0.63
CLN3-216ENST00000565316 VAX2Q9UIW0 290 aa11.12□□□□□ -0.63
CLN3-216ENST00000565316 KIF25-AS1Q9Y6Z4 181 aa11.12□□□□□ -0.63
CLN3-216ENST00000565316 PKHD1L1Q86WI1 4243 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms