RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 A0A087WWL8 130 aa7.22□□□□□ -1.25
VPS39-208ENST00000564994 SCO2A0A1W2PP80 73 aa7.22□□□□□ -1.25
VPS39-208ENST00000564994 M0R381 172 aa7.22□□□□□ -1.25
VPS39-208ENST00000564994 BCL2L11O43521 198 aa7.22□□□□□ -1.25
VPS39-208ENST00000564994 PSCAO43653 123 aa7.22□□□□□ -1.25
VPS39-208ENST00000564994 SYT8Q8NBV8 401 aa7.22□□□□□ -1.25
VPS39-208ENST00000564994 SFRP2Q96HF1 295 aa7.22□□□□□ -1.25
VPS39-208ENST00000564994 ZNF471Q9BX82 626 aaPredicted RBP7.22□□□□□ -1.25
VPS39-208ENST00000564994 BOLA1Q9Y3E2 137 aa7.22□□□□□ -1.25
VPS39-208ENST00000564994 PHLDA3Q9Y5J5 127 aa7.22□□□□□ -1.25
VPS39-208ENST00000564994 VPS13BQ7Z7G8 4022 aa7.22□□□□□ -1.25
VPS39-208ENST00000564994 A0A0D9SG52 128 aa7.21□□□□□ -1.26
VPS39-208ENST00000564994 KANTRA0A1W2PQU2 76 aa7.21□□□□□ -1.26
VPS39-208ENST00000564994 UMAD1C9J7I0 102 aa7.21□□□□□ -1.26
VPS39-208ENST00000564994 RHODO00212 210 aa7.21□□□□□ -1.26
VPS39-208ENST00000564994 TPT1P13693 172 aaKnown RBP7.21□□□□□ -1.26
VPS39-208ENST00000564994 GCSHP23434 173 aa7.21□□□□□ -1.26
VPS39-208ENST00000564994 RPL19P84098 196 aaKnown RBP7.21□□□□□ -1.26
VPS39-208ENST00000564994 LAGE3Q14657 143 aa7.21□□□□□ -1.26
VPS39-208ENST00000564994 FAM74A4Q5TZK3 123 aa7.21□□□□□ -1.26
VPS39-208ENST00000564994 MLST8Q9BVC4 326 aa7.21□□□□□ -1.26
VPS39-208ENST00000564994 WFDC2Q14508 124 aa7.2□□□□□ -1.26
VPS39-208ENST00000564994 DAZ4Q86SG3 579 aaKnown RBP7.2□□□□□ -1.26
VPS39-208ENST00000564994 ZFP82Q8N141 532 aa7.2□□□□□ -1.26
VPS39-208ENST00000564994 Q8N814 137 aa7.2□□□□□ -1.26
VPS39-208ENST00000564994 DAZ3Q9NR90 486 aaKnown RBP7.2□□□□□ -1.26
VPS39-208ENST00000564994 MYCBP2O75592 4640 aa7.2□□□□□ -1.26
VPS39-208ENST00000564994 SRRM2Q9UQ35 2752 aaKnown RBP7.19□□□□□ -1.26
VPS39-208ENST00000564994 IGLV5-52A0A0A0MRZ9 124 aa7.19□□□□□ -1.26
VPS39-208ENST00000564994 EPM2AB3EWF7 344 aa7.19□□□□□ -1.26
VPS39-208ENST00000564994 S100A9P06702 114 aaKnown RBP7.19□□□□□ -1.26
VPS39-208ENST00000564994 H2AFB1P0C5Y9 115 aa7.19□□□□□ -1.26
VPS39-208ENST00000564994 CCL20P78556 96 aa7.19□□□□□ -1.26
VPS39-208ENST00000564994 HAMPP81172 84 aa7.19□□□□□ -1.26
VPS39-208ENST00000564994 TMUB2Q71RG4 321 aa7.19□□□□□ -1.26
VPS39-208ENST00000564994 OR10AG1Q8NH19 301 aa7.19□□□□□ -1.26
VPS39-208ENST00000564994 A0A087WWC5 75 aa7.18□□□□□ -1.26
VPS39-208ENST00000564994 PFDN1O60925 122 aa7.18□□□□□ -1.26
VPS39-208ENST00000564994 NIT1Q86X76 327 aa7.18□□□□□ -1.26
VPS39-208ENST00000564994 BAGE2Q86Y30 109 aa7.18□□□□□ -1.26
VPS39-208ENST00000564994 NTN5Q8WTR8 489 aaPredicted RBP7.18□□□□□ -1.26
VPS39-208ENST00000564994 DNAJC30Q96LL9 226 aa7.18□□□□□ -1.26
VPS39-208ENST00000564994 MUC21A0A0G2JKD1 596 aa7.17□□□□□ -1.26
VPS39-208ENST00000564994 TRBV10-1A0A0K0K1A3 114 aa7.17□□□□□ -1.26
VPS39-208ENST00000564994 MUC21A0A140T8X8 626 aa7.17□□□□□ -1.26
VPS39-208ENST00000564994 CXCL1P09341 107 aa7.17□□□□□ -1.26
VPS39-208ENST00000564994 RPL35P42766 123 aaKnown RBP7.17□□□□□ -1.26
VPS39-208ENST00000564994 UBE2D3P61077 147 aa7.17□□□□□ -1.26
VPS39-208ENST00000564994 UBE2D2P62837 147 aa7.17□□□□□ -1.26
VPS39-208ENST00000564994 EIF5AP63241 154 aaKnown RBP7.17□□□□□ -1.26
VPS39-208ENST00000564994 PRR27Q6MZM9 219 aa7.17□□□□□ -1.26
VPS39-208ENST00000564994 DERL1Q9BUN8 251 aa7.17□□□□□ -1.26
VPS39-208ENST00000564994 SSBP4Q9BWG4 385 aaPredicted RBP7.17□□□□□ -1.26
VPS39-208ENST00000564994 FLG2Q5D862 2391 aaPredicted RBP7.16□□□□□ -1.26
VPS39-208ENST00000564994 TRBV7-3A0A075B6L6 115 aa7.16□□□□□ -1.26
VPS39-208ENST00000564994 TRAV8-3A0A0A6YYJ7 113 aa7.16□□□□□ -1.26
VPS39-208ENST00000564994 LECT2O14960 151 aa7.16□□□□□ -1.26
VPS39-208ENST00000564994 SNAI2O43623 268 aa7.16□□□□□ -1.26
VPS39-208ENST00000564994 SMR3BP02814 79 aaPredicted RBP7.16□□□□□ -1.26
VPS39-208ENST00000564994 Q5VSD8 79 aa7.16□□□□□ -1.26
VPS39-208ENST00000564994 C11orf52Q96A22 123 aa7.16□□□□□ -1.26
VPS39-208ENST00000564994 TM2D2Q9BX73 214 aa7.16□□□□□ -1.26
VPS39-208ENST00000564994 FAM30AQ9NZY2 134 aa7.16□□□□□ -1.26
VPS39-208ENST00000564994 GNG13Q9P2W3 67 aa7.16□□□□□ -1.26
VPS39-208ENST00000564994 TRAV1-1A0A0B4J248 108 aa7.15□□□□□ -1.26
VPS39-208ENST00000564994 IGLV2-8P01709 118 aa7.15□□□□□ -1.26
VPS39-208ENST00000564994 OR5AL1P0C617 328 aa7.15□□□□□ -1.26
VPS39-208ENST00000564994 RAB4BP61018 213 aa7.15□□□□□ -1.26
VPS39-208ENST00000564994 RPL36AP83881 106 aaKnown RBP7.15□□□□□ -1.26
VPS39-208ENST00000564994 NEXN-AS1Q8NBZ9 246 aa7.15□□□□□ -1.26
VPS39-208ENST00000564994 OR10G8Q8NGN5 311 aa7.15□□□□□ -1.26
VPS39-208ENST00000564994 RPL36ALQ969Q0 106 aaKnown RBP7.15□□□□□ -1.26
VPS39-208ENST00000564994 TMEM70Q9BUB7 260 aa7.15□□□□□ -1.26
VPS39-208ENST00000564994 KLK12Q9UKR0 248 aa7.15□□□□□ -1.26
VPS39-208ENST00000564994 DMBT1Q9UGM3 2413 aaPredicted RBP7.15□□□□□ -1.27
VPS39-208ENST00000564994 SSTP61278 116 aa7.14□□□□□ -1.27
VPS39-208ENST00000564994 ZNF56Q15929 161 aa7.14□□□□□ -1.27
VPS39-208ENST00000564994 CENPWQ5EE01 88 aa7.14□□□□□ -1.27
VPS39-208ENST00000564994 TOR2AQ5JU69 321 aa7.14□□□□□ -1.27
VPS39-208ENST00000564994 BAALCQ8WXS3 180 aa7.14□□□□□ -1.27
VPS39-208ENST00000564994 FRZBQ92765 325 aa7.14□□□□□ -1.27
VPS39-208ENST00000564994 MANBALQ9NQG1 85 aa7.14□□□□□ -1.27
VPS39-208ENST00000564994 KIF25-AS1Q9Y6Z4 181 aa7.14□□□□□ -1.27
VPS39-208ENST00000564994 URGCP-MRPS24S4R325 110 aa7.14□□□□□ -1.27
VPS39-208ENST00000564994 TRBV6-8A0A0A6YYG3 113 aa7.13□□□□□ -1.27
VPS39-208ENST00000564994 RAB19A4D1S5 217 aa7.13□□□□□ -1.27
VPS39-208ENST00000564994 INAFM2P0DMQ5 153 aa7.13□□□□□ -1.27
VPS39-208ENST00000564994 GZMBP10144 247 aa7.13□□□□□ -1.27
VPS39-208ENST00000564994 SULT1A2P50226 295 aa7.13□□□□□ -1.27
VPS39-208ENST00000564994 RAB5CP51148 216 aa7.13□□□□□ -1.27
VPS39-208ENST00000564994 SPANXN1Q5VSR9 72 aa7.13□□□□□ -1.27
VPS39-208ENST00000564994 UBE2WQ96B02 151 aa7.13□□□□□ -1.27
VPS39-208ENST00000564994 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.12□□□□□ -1.27
VPS39-208ENST00000564994 IGKV2D-24A0A075B6R9 120 aa7.12□□□□□ -1.27
VPS39-208ENST00000564994 A0A087WX48 190 aa7.12□□□□□ -1.27
VPS39-208ENST00000564994 C19orf71A6NCJ1 209 aa7.12□□□□□ -1.27
VPS39-208ENST00000564994 RBFOX3A6NFN3 312 aa7.12□□□□□ -1.27
VPS39-208ENST00000564994 TCTE3Q8IZS6 198 aa7.12□□□□□ -1.27
VPS39-208ENST00000564994 CHCHD7Q9BUK0 85 aa7.12□□□□□ -1.27
VPS39-208ENST00000564994 TRBV20OR9-2A0A075B6H5 130 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms