RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 FXYD2P54710 66 aa10.82□□□□□ -0.68
CSPG4P12-202ENST00000559989 IGLC6P0CF74 106 aa10.82□□□□□ -0.68
CSPG4P12-202ENST00000559989 EPOPA6NHQ4 379 aa10.82□□□□□ -0.68
CSPG4P12-202ENST00000559989 DSCAML1Q8TD84 2053 aa10.82□□□□□ -0.68
CSPG4P12-202ENST00000559989 GP9P14770 177 aa10.81□□□□□ -0.68
CSPG4P12-202ENST00000559989 ABCA4P78363 2273 aa10.81□□□□□ -0.68
CSPG4P12-202ENST00000559989 MAPK1IP1LQ8NDC0 245 aa10.81□□□□□ -0.68
CSPG4P12-202ENST00000559989 ZSWIM8A7E2V4 1837 aa10.81□□□□□ -0.68
CSPG4P12-202ENST00000559989 LOXP28300 417 aaPredicted RBP10.81□□□□□ -0.68
CSPG4P12-202ENST00000559989 KIAA1549Q9HCM3 1950 aa10.81□□□□□ -0.68
CSPG4P12-202ENST00000559989 ENHOQ6UWT2 76 aa10.81□□□□□ -0.68
CSPG4P12-202ENST00000559989 ARHGAP32A7KAX9 2087 aa10.8□□□□□ -0.68
CSPG4P12-202ENST00000559989 APRG1Q8IVJ8 170 aa10.8□□□□□ -0.68
CSPG4P12-202ENST00000559989 ZNF581Q9P0T4 197 aa10.8□□□□□ -0.68
CSPG4P12-202ENST00000559989 VPREB3Q9UKI3 123 aa10.8□□□□□ -0.68
CSPG4P12-202ENST00000559989 PLXNA3P51805 1871 aa10.8□□□□□ -0.68
CSPG4P12-202ENST00000559989 A0A0J9YXV3 536 aa10.8□□□□□ -0.68
CSPG4P12-202ENST00000559989 PRR4Q16378 134 aa10.8□□□□□ -0.68
CSPG4P12-202ENST00000559989 MIAQ16674 131 aa10.8□□□□□ -0.68
CSPG4P12-202ENST00000559989 ZNF491Q8N8L2 437 aa10.8□□□□□ -0.68
CSPG4P12-202ENST00000559989 TIMM17BO60830 172 aa10.8□□□□□ -0.68
CSPG4P12-202ENST00000559989 PLXNB3Q9ULL4 1909 aa10.8□□□□□ -0.68
CSPG4P12-202ENST00000559989 A0A0J9YWU9 116 aa10.79□□□□□ -0.68
CSPG4P12-202ENST00000559989 WT1-ASQ06250 92 aa10.79□□□□□ -0.68
CSPG4P12-202ENST00000559989 Q8N9L7 120 aa10.79□□□□□ -0.68
CSPG4P12-202ENST00000559989 C9orf85Q96MD7 179 aa10.79□□□□□ -0.68
CSPG4P12-202ENST00000559989 GATA1P15976 413 aaPredicted RBP10.79□□□□□ -0.68
CSPG4P12-202ENST00000559989 NLRC5Q86WI3 1866 aa10.79□□□□□ -0.68
CSPG4P12-202ENST00000559989 GTSF1Q8WW33 167 aa10.78□□□□□ -0.68
CSPG4P12-202ENST00000559989 SERP2Q8N6R1 65 aa10.78□□□□□ -0.68
CSPG4P12-202ENST00000559989 FLVCR1-AS1Q8TAF5 88 aa10.78□□□□□ -0.68
CSPG4P12-202ENST00000559989 AGPAT4-IT1Q9H0P7 198 aa10.78□□□□□ -0.68
CSPG4P12-202ENST00000559989 TET1Q8NFU7 2136 aa10.78□□□□□ -0.68
CSPG4P12-202ENST00000559989 TPSG1Q9NRR2 321 aa10.78□□□□□ -0.68
CSPG4P12-202ENST00000559989 SPTA1P02549 2419 aa10.78□□□□□ -0.68
CSPG4P12-202ENST00000559989 BLCAPP62952 87 aa10.78□□□□□ -0.68
CSPG4P12-202ENST00000559989 IL17DQ8TAD2 202 aa10.78□□□□□ -0.68
CSPG4P12-202ENST00000559989 RNASE8Q8TDE3 154 aaKnown RBP10.77□□□□□ -0.68
CSPG4P12-202ENST00000559989 TCL1BO95988 128 aa10.77□□□□□ -0.68
CSPG4P12-202ENST00000559989 UNQ6494/PRO21346Q6UXR6 183 aa10.77□□□□□ -0.68
CSPG4P12-202ENST00000559989 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.77□□□□□ -0.69
CSPG4P12-202ENST00000559989 UFSP1Q6NVU6 142 aa10.77□□□□□ -0.69
CSPG4P12-202ENST00000559989 FOXL2NBQ6ZUU3 175 aa10.77□□□□□ -0.69
CSPG4P12-202ENST00000559989 LYPD6BQ8NI32 183 aa10.77□□□□□ -0.69
CSPG4P12-202ENST00000559989 NDUFA11Q86Y39 141 aa10.77□□□□□ -0.69
CSPG4P12-202ENST00000559989 TMEM263Q8WUH6 116 aaKnown RBP10.77□□□□□ -0.69
CSPG4P12-202ENST00000559989 EML5Q05BV3 1969 aa10.76□□□□□ -0.69
CSPG4P12-202ENST00000559989 NFE4Q86UQ8 179 aa10.76□□□□□ -0.69
CSPG4P12-202ENST00000559989 TCF20Q9UGU0 1960 aaKnown RBP10.76□□□□□ -0.69
CSPG4P12-202ENST00000559989 COL5A3P25940 1745 aaPredicted RBP10.76□□□□□ -0.69
CSPG4P12-202ENST00000559989 RPL39P62891 51 aaKnown RBP10.76□□□□□ -0.69
CSPG4P12-202ENST00000559989 THSD7AQ9UPZ6 1657 aa10.76□□□□□ -0.69
CSPG4P12-202ENST00000559989 IGHV4-30-2A0A087WSY4 118 aa10.76□□□□□ -0.69
CSPG4P12-202ENST00000559989 MED14OSP0DP75 135 aa10.76□□□□□ -0.69
CSPG4P12-202ENST00000559989 KLK12Q9UKR0 248 aa10.76□□□□□ -0.69
CSPG4P12-202ENST00000559989 TMEM105Q8N8V8 129 aa10.75□□□□□ -0.69
CSPG4P12-202ENST00000559989 RNF144BQ7Z419 303 aa10.75□□□□□ -0.69
CSPG4P12-202ENST00000559989 ZDBF2Q9HCK1 2354 aa10.74□□□□□ -0.69
CSPG4P12-202ENST00000559989 SLURP1P55000 103 aa10.74□□□□□ -0.69
CSPG4P12-202ENST00000559989 PMAIP1Q13794 54 aa10.74□□□□□ -0.69
CSPG4P12-202ENST00000559989 ANAPC1Q9H1A4 1944 aa10.74□□□□□ -0.69
CSPG4P12-202ENST00000559989 NDUFA7O95182 113 aa10.74□□□□□ -0.69
CSPG4P12-202ENST00000559989 HIGD2AQ9BW72 106 aa10.74□□□□□ -0.69
CSPG4P12-202ENST00000559989 COA6Q5JTJ3 125 aaKnown RBP10.74□□□□□ -0.69
CSPG4P12-202ENST00000559989 SCXQ7RTU7 201 aa10.74□□□□□ -0.69
CSPG4P12-202ENST00000559989 B3GALT5-AS1P59052 145 aa10.74□□□□□ -0.69
CSPG4P12-202ENST00000559989 FAM19A3Q7Z5A8 133 aa10.74□□□□□ -0.69
CSPG4P12-202ENST00000559989 MDFICQ9P1T7 246 aa10.74□□□□□ -0.69
CSPG4P12-202ENST00000559989 CTSGP08311 255 aa10.73□□□□□ -0.69
CSPG4P12-202ENST00000559989 LOXL1Q08397 574 aaPredicted RBP10.73□□□□□ -0.69
CSPG4P12-202ENST00000559989 VWA8A3KMH1 1905 aa10.73□□□□□ -0.69
CSPG4P12-202ENST00000559989 VPREB1P12018 145 aa10.73□□□□□ -0.69
CSPG4P12-202ENST00000559989 UBE2D1P51668 147 aa10.73□□□□□ -0.69
CSPG4P12-202ENST00000559989 FAM222AQ5U5X8 452 aa10.73□□□□□ -0.69
CSPG4P12-202ENST00000559989 FAM19A1Q7Z5A9 133 aa10.73□□□□□ -0.69
CSPG4P12-202ENST00000559989 LRCOL1A6NCL2 159 aa10.73□□□□□ -0.69
CSPG4P12-202ENST00000559989 DEFB112Q30KQ8 113 aa10.72□□□□□ -0.69
CSPG4P12-202ENST00000559989 COL6A6A6NMZ7 2263 aa10.72□□□□□ -0.69
CSPG4P12-202ENST00000559989 C15orf65H3BRN8 121 aa10.72□□□□□ -0.69
CSPG4P12-202ENST00000559989 SNURFQ9Y675 71 aa10.72□□□□□ -0.69
CSPG4P12-202ENST00000559989 COL11A2P13942 1736 aaPredicted RBP10.72□□□□□ -0.69
CSPG4P12-202ENST00000559989 DEFB136Q30KP8 78 aa10.72□□□□□ -0.69
CSPG4P12-202ENST00000559989 Q6ZS92 163 aa10.72□□□□□ -0.69
CSPG4P12-202ENST00000559989 COL18A1P39060 1754 aa10.72□□□□□ -0.69
CSPG4P12-202ENST00000559989 FNDC1Q4ZHG4 1894 aaPredicted RBP10.72□□□□□ -0.69
CSPG4P12-202ENST00000559989 TRBV27A0A0K0K1C4 114 aa10.72□□□□□ -0.69
CSPG4P12-202ENST00000559989 Q8N9W7 124 aa10.72□□□□□ -0.69
CSPG4P12-202ENST00000559989 PTH2Q96A98 100 aa10.71□□□□□ -0.69
CSPG4P12-202ENST00000559989 PCDH15Q96QU1 1955 aa10.71□□□□□ -0.69
CSPG4P12-202ENST00000559989 MT-ATP8P03928 68 aa10.71□□□□□ -0.69
CSPG4P12-202ENST00000559989 MED12LQ86YW9 2145 aa10.71□□□□□ -0.69
CSPG4P12-202ENST00000559989 UBE2D4Q9Y2X8 147 aa10.71□□□□□ -0.69
CSPG4P12-202ENST00000559989 IGKV1D-37A0A075B6S9 117 aa10.71□□□□□ -0.69
CSPG4P12-202ENST00000559989 SPTBN2O15020 2390 aa10.71□□□□□ -0.7
CSPG4P12-202ENST00000559989 MRPS36P82909 103 aaKnown RBP10.71□□□□□ -0.7
CSPG4P12-202ENST00000559989 FHL1Q13642 323 aa10.71□□□□□ -0.7
CSPG4P12-202ENST00000559989 ZNF706Q9Y5V0 76 aaPredicted RBP10.71□□□□□ -0.7
CSPG4P12-202ENST00000559989 IGKV1-17P01599 117 aa10.71□□□□□ -0.7
CSPG4P12-202ENST00000559989 A0A087WZ39 114 aa10.7□□□□□ -0.7
CSPG4P12-202ENST00000559989 IMUPQ9GZP8 106 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms