RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 HLA-DRB4X5D2U9 266 aa11.98□□□□□ -0.49
CUX1-211ENST00000546411 TRBV25-1A0A075B6N4 114 aa11.98□□□□□ -0.49
CUX1-211ENST00000546411 RPL39P62891 51 aaKnown RBP11.98□□□□□ -0.49
CUX1-211ENST00000546411 OCIAD2Q56VL3 154 aa11.98□□□□□ -0.49
CUX1-211ENST00000546411 SCRT2Q9NQ03 307 aa11.98□□□□□ -0.49
CUX1-211ENST00000546411 ERG28Q9UKR5 140 aa11.98□□□□□ -0.49
CUX1-211ENST00000546411 A0A087WX48 190 aa11.98□□□□□ -0.49
CUX1-211ENST00000546411 IGHV4OR15-8A0A075B7B6 117 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 A0A087WW49 117 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 GAGE12JA6NER3 117 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 GAGE1Q13065 139 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 GAGE4Q13068 117 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 GAGE5Q13069 117 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 DEFB125Q8N687 156 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 MRPL53Q96EL3 112 aaKnown RBP11.97□□□□□ -0.49
CUX1-211ENST00000546411 TIMM21Q9BVV7 248 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 LENEPQ9Y5L5 61 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 MYMXA0A1B0GTQ4 84 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 ELANEP08246 267 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 ADAMTSL5Q6ZMM2 481 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 C9orf47Q6ZRZ4 202 aa11.97□□□□□ -0.49
CUX1-211ENST00000546411 ZNF48Q96MX3 618 aaPredicted RBP11.97□□□□□ -0.49
CUX1-211ENST00000546411 TRAV8-2A0A0B4J237 113 aa11.96□□□□□ -0.49
CUX1-211ENST00000546411 GTSF1LQ9H1H1 148 aa11.96□□□□□ -0.49
CUX1-211ENST00000546411 H3BMG7 143 aa11.96□□□□□ -0.49
CUX1-211ENST00000546411 ZNRF2Q8NHG8 242 aa11.96□□□□□ -0.49
CUX1-211ENST00000546411 Q6ZQT7 251 aa11.96□□□□□ -0.5
CUX1-211ENST00000546411 Q6ZS46 218 aa11.96□□□□□ -0.5
CUX1-211ENST00000546411 Q8N1Y9 231 aa11.95□□□□□ -0.5
CUX1-211ENST00000546411 C20orf78Q9BR46 151 aa11.95□□□□□ -0.5
CUX1-211ENST00000546411 H3BUA1 57 aa11.95□□□□□ -0.5
CUX1-211ENST00000546411 GAS8-AS1O95177 125 aa11.95□□□□□ -0.5
CUX1-211ENST00000546411 ZFAND3Q9H8U3 227 aa11.95□□□□□ -0.5
CUX1-211ENST00000546411 TMEM238C9JI98 176 aa11.95□□□□□ -0.5
CUX1-211ENST00000546411 I3L3M4 83 aa11.95□□□□□ -0.5
CUX1-211ENST00000546411 MDFICQ9P1T7 246 aa11.95□□□□□ -0.5
CUX1-211ENST00000546411 K7EP13 123 aa11.94□□□□□ -0.5
CUX1-211ENST00000546411 LGALS1P09382 135 aaKnown RBP11.94□□□□□ -0.5
CUX1-211ENST00000546411 SUMO4Q6EEV6 95 aa11.94□□□□□ -0.5
CUX1-211ENST00000546411 GAGE7O76087 117 aa11.94□□□□□ -0.5
CUX1-211ENST00000546411 GAGE12FP0CL80 117 aa11.94□□□□□ -0.5
CUX1-211ENST00000546411 GAGE12GP0CL81 117 aa11.94□□□□□ -0.5
CUX1-211ENST00000546411 GAGE12IP0CL82 117 aa11.94□□□□□ -0.5
CUX1-211ENST00000546411 FXYD2P54710 66 aa11.94□□□□□ -0.5
CUX1-211ENST00000546411 PAX2Q02962 417 aa11.94□□□□□ -0.5
CUX1-211ENST00000546411 C20orf173Q96LM9 149 aa11.94□□□□□ -0.5
CUX1-211ENST00000546411 ATP6V0BQ99437 205 aa11.94□□□□□ -0.5
CUX1-211ENST00000546411 EBI3Q14213 229 aa11.93□□□□□ -0.5
CUX1-211ENST00000546411 TRBV6-1A0A0K0K1D8 114 aa11.93□□□□□ -0.5
CUX1-211ENST00000546411 J3QLI3 93 aa11.93□□□□□ -0.5
CUX1-211ENST00000546411 DNAL4O96015 105 aa11.93□□□□□ -0.5
CUX1-211ENST00000546411 PLEKHB2Q96CS7 222 aa11.93□□□□□ -0.5
CUX1-211ENST00000546411 TRBV7-9A0A0J9YWB2 115 aa11.93□□□□□ -0.5
CUX1-211ENST00000546411 A0A1W2PPM0 123 aa11.93□□□□□ -0.5
CUX1-211ENST00000546411 A8MWV9 139 aa11.93□□□□□ -0.5
CUX1-211ENST00000546411 IGLC6P0CF74 106 aa11.93□□□□□ -0.5
CUX1-211ENST00000546411 ZNF493Q6ZR52 646 aa11.93□□□□□ -0.5
CUX1-211ENST00000546411 A6NDX4 124 aa11.92□□□□□ -0.5
CUX1-211ENST00000546411 CEND1Q8N111 149 aa11.92□□□□□ -0.5
CUX1-211ENST00000546411 ODF1Q14990 250 aa11.92□□□□□ -0.5
CUX1-211ENST00000546411 SPATA12Q7Z6I5 190 aa11.92□□□□□ -0.5
CUX1-211ENST00000546411 RAI1Q7Z5J4 1906 aaPredicted RBP11.92□□□□□ -0.5
CUX1-211ENST00000546411 TAX1BP3O14907 124 aa11.91□□□□□ -0.5
CUX1-211ENST00000546411 AZU1P20160 251 aa11.91□□□□□ -0.5
CUX1-211ENST00000546411 DLX4Q92988 240 aaPredicted RBP11.91□□□□□ -0.5
CUX1-211ENST00000546411 FLNBO75369 2602 aaKnown RBP11.91□□□□□ -0.5
CUX1-211ENST00000546411 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.91□□□□□ -0.5
CUX1-211ENST00000546411 IGKV2-29A2NJV5 120 aaPredicted RBP11.91□□□□□ -0.5
CUX1-211ENST00000546411 M0R2P5 195 aa11.91□□□□□ -0.5
CUX1-211ENST00000546411 A0A1B0GV72 72 aa11.91□□□□□ -0.5
CUX1-211ENST00000546411 PRIMA1Q86XR5 153 aa11.91□□□□□ -0.5
CUX1-211ENST00000546411 RNASE8Q8TDE3 154 aaKnown RBP11.91□□□□□ -0.5
CUX1-211ENST00000546411 J3QQQ9 107 aa11.91□□□□□ -0.5
CUX1-211ENST00000546411 LINC00158P58513 81 aa11.91□□□□□ -0.5
CUX1-211ENST00000546411 GATD1Q8NB37 220 aa11.91□□□□□ -0.5
CUX1-211ENST00000546411 C11orf21Q9P2W6 132 aa11.91□□□□□ -0.5
CUX1-211ENST00000546411 FSTL3O95633 263 aa11.9□□□□□ -0.5
CUX1-211ENST00000546411 Q8N6K4 173 aa11.9□□□□□ -0.5
CUX1-211ENST00000546411 OPRPNQ99935 248 aaPredicted RBP11.9□□□□□ -0.5
CUX1-211ENST00000546411 DEFB113Q30KQ7 82 aa11.9□□□□□ -0.5
CUX1-211ENST00000546411 PRORYQ9H606 182 aa11.9□□□□□ -0.5
CUX1-211ENST00000546411 FOXI2Q6ZQN5 318 aa11.9□□□□□ -0.51
CUX1-211ENST00000546411 AKAP13Q12802 2813 aa11.89□□□□□ -0.51
CUX1-211ENST00000546411 C12orf74Q32Q52 190 aa11.89□□□□□ -0.51
CUX1-211ENST00000546411 A0A0J9YXV3 536 aa11.89□□□□□ -0.51
CUX1-211ENST00000546411 C9JAW5 83 aa11.89□□□□□ -0.51
CUX1-211ENST00000546411 K7EP34 96 aa11.89□□□□□ -0.51
CUX1-211ENST00000546411 ZFP2Q6ZN57 461 aa11.89□□□□□ -0.51
CUX1-211ENST00000546411 TMEM61Q8N0U2 210 aa11.89□□□□□ -0.51
CUX1-211ENST00000546411 TMEM141Q96I45 108 aa11.89□□□□□ -0.51
CUX1-211ENST00000546411 U3KQE9 123 aa11.88□□□□□ -0.51
CUX1-211ENST00000546411 MRGPRG-AS1Q2M3A8 158 aa11.88□□□□□ -0.51
CUX1-211ENST00000546411 A0A096LPF7 62 aa11.87□□□□□ -0.51
CUX1-211ENST00000546411 HIST2H2BCQ6DN03 193 aa11.87□□□□□ -0.51
CUX1-211ENST00000546411 BOD1L2Q8IYS8 172 aa11.87□□□□□ -0.51
CUX1-211ENST00000546411 SIGMAR1Q99720 223 aa11.87□□□□□ -0.51
CUX1-211ENST00000546411 SPINK8P0C7L1 97 aa11.87□□□□□ -0.51
CUX1-211ENST00000546411 URB1-AS1Q96HZ7 61 aa11.87□□□□□ -0.51
CUX1-211ENST00000546411 RHODO00212 210 aa11.87□□□□□ -0.51
CUX1-211ENST00000546411 NDUFA12Q9UI09 145 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms