RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 Q8N1Y9 231 aa13.36□□□□□ -0.27
VIM-209ENST00000544301 CREBBPQ92793 2442 aa13.36□□□□□ -0.27
VIM-209ENST00000544301 AGRNO00468 2067 aa13.36□□□□□ -0.27
VIM-209ENST00000544301 TRAV8-6A0A0B4J262 113 aa13.36□□□□□ -0.27
VIM-209ENST00000544301 AMTNQ6UX39 209 aa13.36□□□□□ -0.27
VIM-209ENST00000544301 OR4C5Q8NGB2 326 aa13.36□□□□□ -0.27
VIM-209ENST00000544301 CHTOPQ9Y3Y2 248 aaKnown RBP13.36□□□□□ -0.27
VIM-209ENST00000544301 H3BRM9 83 aa13.35□□□□□ -0.27
VIM-209ENST00000544301 POLR2KP53803 58 aaKnown RBP13.35□□□□□ -0.27
VIM-209ENST00000544301 BAALCQ8WXS3 180 aa13.35□□□□□ -0.27
VIM-209ENST00000544301 TRBV25-1A0A075B6N4 114 aa13.34□□□□□ -0.27
VIM-209ENST00000544301 F5H697 171 aa13.34□□□□□ -0.27
VIM-209ENST00000544301 APCP25054 2843 aa13.34□□□□□ -0.27
VIM-209ENST00000544301 SYT8Q8NBV8 401 aa13.34□□□□□ -0.27
VIM-209ENST00000544301 CHAC1Q9BUX1 264 aa13.34□□□□□ -0.27
VIM-209ENST00000544301 MAPKAPK5-AS1Q8N8E1 139 aa13.33□□□□□ -0.28
VIM-209ENST00000544301 EPG5Q9HCE0 2579 aa13.32□□□□□ -0.28
VIM-209ENST00000544301 C9orf118A6NHY6 69 aa13.32□□□□□ -0.28
VIM-209ENST00000544301 LINC01619G3V211 115 aa13.32□□□□□ -0.28
VIM-209ENST00000544301 VCYO14598 125 aa13.32□□□□□ -0.28
VIM-209ENST00000544301 FAM74A4Q5TZK3 123 aa13.32□□□□□ -0.28
VIM-209ENST00000544301 ZNF469Q96JG9 3925 aaPredicted RBP13.32□□□□□ -0.28
VIM-209ENST00000544301 PRSS29PA6NIE9 313 aa13.31□□□□□ -0.28
VIM-209ENST00000544301 ZFP2Q6ZN57 461 aa13.31□□□□□ -0.28
VIM-209ENST00000544301 CYSLTR1Q9Y271 337 aa13.31□□□□□ -0.28
VIM-209ENST00000544301 SORL1Q92673 2214 aa13.31□□□□□ -0.28
VIM-209ENST00000544301 AKAP9Q99996 3911 aa13.31□□□□□ -0.28
VIM-209ENST00000544301 TRBV6-5A0A0K0K1A5 114 aa13.31□□□□□ -0.28
VIM-209ENST00000544301 KNCNA6PVL3 124 aa13.31□□□□□ -0.28
VIM-209ENST00000544301 CRYGDP07320 174 aa13.31□□□□□ -0.28
VIM-209ENST00000544301 OR11H1Q8NG94 326 aa13.31□□□□□ -0.28
VIM-209ENST00000544301 SDHAF1A6NFY7 115 aa13.3□□□□□ -0.28
VIM-209ENST00000544301 GCSHP23434 173 aa13.3□□□□□ -0.28
VIM-209ENST00000544301 DEFB104AQ8WTQ1 72 aa13.3□□□□□ -0.28
VIM-209ENST00000544301 C4orf3Q8WVX3 66 aa13.3□□□□□ -0.28
VIM-209ENST00000544301 KIR2DL4Q99706 377 aa13.3□□□□□ -0.28
VIM-209ENST00000544301 TP53TG1Q9Y2A0 90 aa13.3□□□□□ -0.28
VIM-209ENST00000544301 K7EP13 123 aa13.3□□□□□ -0.28
VIM-209ENST00000544301 DEFB131AP59861 70 aa13.3□□□□□ -0.28
VIM-209ENST00000544301 DUX3Q96PT4 197 aa13.3□□□□□ -0.28
VIM-209ENST00000544301 NBPF19A0A087WUL8 3843 aa13.29□□□□□ -0.28
VIM-209ENST00000544301 TRBV27A0A0K0K1C4 114 aa13.29□□□□□ -0.28
VIM-209ENST00000544301 M0QY20 66 aa13.29□□□□□ -0.28
VIM-209ENST00000544301 RBMY1A1P0DJD3 496 aaKnown RBP13.29□□□□□ -0.28
VIM-209ENST00000544301 RBMY1CP0DJD4 496 aa13.29□□□□□ -0.28
VIM-209ENST00000544301 FXYD2P54710 66 aa13.29□□□□□ -0.28
VIM-209ENST00000544301 RBMY1FQ15415 496 aaKnown RBP13.29□□□□□ -0.28
VIM-209ENST00000544301 ZNF56Q15929 161 aa13.29□□□□□ -0.28
VIM-209ENST00000544301 MORN3Q6PF18 240 aaPredicted RBP13.29□□□□□ -0.28
VIM-209ENST00000544301 TRGV11A0A075B6L2 103 aa13.28□□□□□ -0.28
VIM-209ENST00000544301 IGIPA6NJ69 53 aa13.28□□□□□ -0.28
VIM-209ENST00000544301 TSHBP01222 138 aa13.28□□□□□ -0.28
VIM-209ENST00000544301 JMJD8Q96S16 334 aa13.28□□□□□ -0.28
VIM-209ENST00000544301 PEMTQ9UBM1 199 aa13.28□□□□□ -0.28
VIM-209ENST00000544301 LINC01549A6NIU2 74 aa13.28□□□□□ -0.28
VIM-209ENST00000544301 ZNF876PQ49A33 203 aa13.28□□□□□ -0.28
VIM-209ENST00000544301 RAB37Q96AX2 223 aa13.28□□□□□ -0.28
VIM-209ENST00000544301 TRAV2A0A0B4J234 112 aa13.27□□□□□ -0.28
VIM-209ENST00000544301 A8MTW9 85 aa13.27□□□□□ -0.28
VIM-209ENST00000544301 H3BUT2 72 aa13.27□□□□□ -0.28
VIM-209ENST00000544301 MYO9AB2RTY4 2548 aa13.27□□□□□ -0.29
VIM-209ENST00000544301 H3BMM0 161 aa13.27□□□□□ -0.29
VIM-209ENST00000544301 RIPPLY3P57055 190 aa13.27□□□□□ -0.29
VIM-209ENST00000544301 RPL39P62891 51 aaKnown RBP13.27□□□□□ -0.29
VIM-209ENST00000544301 KHDC1LQ5JSQ8 128 aa13.27□□□□□ -0.29
VIM-209ENST00000544301 TMEM61Q8N0U2 210 aa13.27□□□□□ -0.29
VIM-209ENST00000544301 DLX4Q92988 240 aaPredicted RBP13.27□□□□□ -0.29
VIM-209ENST00000544301 NAA38Q9BRA0 125 aaKnown RBP13.27□□□□□ -0.29
VIM-209ENST00000544301 TM2D2Q9BX73 214 aa13.27□□□□□ -0.29
VIM-209ENST00000544301 OR11H12B2RN74 326 aa13.26□□□□□ -0.29
VIM-209ENST00000544301 CEND1Q8N111 149 aa13.26□□□□□ -0.29
VIM-209ENST00000544301 TMEM86BQ8N661 226 aa13.26□□□□□ -0.29
VIM-209ENST00000544301 OR11H2Q8NH07 326 aa13.26□□□□□ -0.29
VIM-209ENST00000544301 ITPR3Q14573 2671 aa13.26□□□□□ -0.29
VIM-209ENST00000544301 RBMY1BA6NDE4 496 aaKnown RBP13.25□□□□□ -0.29
VIM-209ENST00000544301 RBMY1EA6NEQ0 496 aaKnown RBP13.25□□□□□ -0.29
VIM-209ENST00000544301 RBMY1DP0C7P1 496 aaKnown RBP13.25□□□□□ -0.29
VIM-209ENST00000544301 SMIM13P0DJ93 91 aa13.25□□□□□ -0.29
VIM-209ENST00000544301 TMEM141Q96I45 108 aa13.25□□□□□ -0.29
VIM-209ENST00000544301 ZNF256Q9Y2P7 627 aaPredicted RBP13.25□□□□□ -0.29
VIM-209ENST00000544301 GAGE10A6NGK3 116 aa13.25□□□□□ -0.29
VIM-209ENST00000544301 HIST2H2BDQ6DRA6 164 aa13.25□□□□□ -0.29
VIM-209ENST00000544301 TRPT1Q86TN4 253 aaKnown RBP13.25□□□□□ -0.29
VIM-209ENST00000544301 KLHL30-AS1Q8NEE0 82 aa13.25□□□□□ -0.29
VIM-209ENST00000544301 RNASE8Q8TDE3 154 aaKnown RBP13.25□□□□□ -0.29
VIM-209ENST00000544301 MYMXA0A1B0GTQ4 84 aa13.24□□□□□ -0.29
VIM-209ENST00000544301 E9PLD3 99 aa13.24□□□□□ -0.29
VIM-209ENST00000544301 WFDC11Q8NEX6 87 aa13.24□□□□□ -0.29
VIM-209ENST00000544301 TIMM17AQ99595 171 aa13.24□□□□□ -0.29
VIM-209ENST00000544301 TAL2Q16559 108 aa13.24□□□□□ -0.29
VIM-209ENST00000544301 Q6ZSV7 163 aa13.24□□□□□ -0.29
VIM-209ENST00000544301 IGLV4-69A0A075B6H9 119 aa13.23□□□□□ -0.29
VIM-209ENST00000544301 PMVKQ15126 192 aa13.23□□□□□ -0.29
VIM-209ENST00000544301 UFSP1Q6NVU6 142 aa13.23□□□□□ -0.29
VIM-209ENST00000544301 CST9LQ9H4G1 147 aa13.23□□□□□ -0.29
VIM-209ENST00000544301 TLN2Q9Y4G6 2542 aa13.23□□□□□ -0.29
VIM-209ENST00000544301 HTN1P15515 57 aa13.22□□□□□ -0.29
VIM-209ENST00000544301 DYNLRB2Q8TF09 96 aa13.22□□□□□ -0.29
VIM-209ENST00000544301 PRADC1Q9BSG0 188 aa13.22□□□□□ -0.29
VIM-209ENST00000544301 A0A1W2PPM0 123 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms