RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 GNRH2O43555 120 aa7.34□□□□□ -1.23
SS18-205ENST00000542420 ZNF688P0C7X2 276 aa7.34□□□□□ -1.23
SS18-205ENST00000542420 C10orf99Q6UWK7 81 aa7.34□□□□□ -1.23
SS18-205ENST00000542420 AMTNQ6UX39 209 aa7.34□□□□□ -1.23
SS18-205ENST00000542420 H7C1H1 209 aa7.33□□□□□ -1.24
SS18-205ENST00000542420 POLR2KP53803 58 aaKnown RBP7.33□□□□□ -1.24
SS18-205ENST00000542420 C14orf178Q8N769 122 aaPredicted RBP7.33□□□□□ -1.24
SS18-205ENST00000542420 FOXC2Q99958 501 aa7.33□□□□□ -1.24
SS18-205ENST00000542420 DKK2Q9UBU2 259 aa7.33□□□□□ -1.24
SS18-205ENST00000542420 CSPG4Q6UVK1 2322 aa7.33□□□□□ -1.24
SS18-205ENST00000542420 IGKV3-7A0A075B6H7 116 aa7.33□□□□□ -1.24
SS18-205ENST00000542420 TRAV26-2A0A0B4J265 109 aa7.33□□□□□ -1.24
SS18-205ENST00000542420 F8VRH5 84 aa7.33□□□□□ -1.24
SS18-205ENST00000542420 VCYO14598 125 aa7.33□□□□□ -1.24
SS18-205ENST00000542420 CD7P09564 240 aa7.33□□□□□ -1.24
SS18-205ENST00000542420 PAPPA-AS1Q5QFB9 102 aa7.33□□□□□ -1.24
SS18-205ENST00000542420 SPAG8Q99932 426 aaPredicted RBP7.33□□□□□ -1.24
SS18-205ENST00000542420 UBR5O95071 2799 aaPredicted RBP7.32□□□□□ -1.24
SS18-205ENST00000542420 OR11H12B2RN74 326 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 J3KRW8 73 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 EDN2P20800 178 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 TAL2Q16559 108 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 WFDC3Q8IUB2 231 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 OR11H1Q8NG94 326 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 OR11H2Q8NH07 326 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 TMEM141Q96I45 108 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 TRAV12-3A0A0B4J271 114 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 TRBV27A0A0K0K1C4 114 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 MGPP08493 103 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 SRD5A1P18405 259 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 DEFB1P60022 68 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 RHOHQ15669 191 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 NEXN-AS1Q8NBZ9 246 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 MAPK1IP1LQ8NDC0 245 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 RAB37Q96AX2 223 aa7.32□□□□□ -1.24
SS18-205ENST00000542420 SPG11Q96JI7 2443 aa7.31□□□□□ -1.24
SS18-205ENST00000542420 FXYD7P58549 80 aa7.31□□□□□ -1.24
SS18-205ENST00000542420 SCGB3A1Q96QR1 104 aa7.31□□□□□ -1.24
SS18-205ENST00000542420 TIMM17AQ99595 171 aa7.31□□□□□ -1.24
SS18-205ENST00000542420 MRPL16Q9NX20 251 aaKnown RBP7.31□□□□□ -1.24
SS18-205ENST00000542420 CYSLTR1Q9Y271 337 aa7.31□□□□□ -1.24
SS18-205ENST00000542420 FABP2P12104 132 aa7.3□□□□□ -1.24
SS18-205ENST00000542420 WFDC2Q14508 124 aa7.3□□□□□ -1.24
SS18-205ENST00000542420 SUMO4Q6EEV6 95 aa7.3□□□□□ -1.24
SS18-205ENST00000542420 C2orf66Q6UXQ4 117 aa7.3□□□□□ -1.24
SS18-205ENST00000542420 TRPT1Q86TN4 253 aaKnown RBP7.3□□□□□ -1.24
SS18-205ENST00000542420 PHLDA1Q8WV24 401 aaPredicted RBP7.3□□□□□ -1.24
SS18-205ENST00000542420 KIR2DL4Q99706 377 aa7.3□□□□□ -1.24
SS18-205ENST00000542420 CMC4P56277 68 aaPredicted RBP7.3□□□□□ -1.24
SS18-205ENST00000542420 SAMD5Q5TGI4 173 aa7.3□□□□□ -1.24
SS18-205ENST00000542420 RPL39LQ96EH5 51 aaKnown RBP7.3□□□□□ -1.24
SS18-205ENST00000542420 C16orf95Q9H693 158 aa7.3□□□□□ -1.24
SS18-205ENST00000542420 MRPL35Q9NZE8 188 aaKnown RBP7.3□□□□□ -1.24
SS18-205ENST00000542420 FHL3Q13643 280 aa7.29□□□□□ -1.24
SS18-205ENST00000542420 NSUN5P1Q3KNT7 163 aa7.29□□□□□ -1.24
SS18-205ENST00000542420 ZNF418Q8TF45 676 aaPredicted RBP7.29□□□□□ -1.24
SS18-205ENST00000542420 DUX5Q96PT3 197 aa7.29□□□□□ -1.24
SS18-205ENST00000542420 TMEM160Q9NX00 188 aa7.29□□□□□ -1.24
SS18-205ENST00000542420 SS18L2Q9UHA2 77 aa7.29□□□□□ -1.24
SS18-205ENST00000542420 H3BMM0 161 aa7.29□□□□□ -1.24
SS18-205ENST00000542420 INSL3P51460 131 aa7.29□□□□□ -1.24
SS18-205ENST00000542420 C4orf48Q5BLP8 95 aa7.29□□□□□ -1.24
SS18-205ENST00000542420 ZC2HC1BQ5TFG8 222 aa7.29□□□□□ -1.24
SS18-205ENST00000542420 Q6ZSV7 163 aa7.29□□□□□ -1.24
SS18-205ENST00000542420 Q8N1Y9 231 aa7.29□□□□□ -1.24
SS18-205ENST00000542420 CRYGDP07320 174 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 NMUP48645 174 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 SLURP1P55000 103 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 ZFP2Q6ZN57 461 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 MTURNQ8N3F0 131 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 CDIP1Q9H305 208 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 A8MWV9 139 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 SPINK13Q1W4C9 94 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 SH2D6Q7Z4S9 175 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 DYNLRB2Q8TF09 96 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 BAALCQ8WXS3 180 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 FAM110AQ9BQ89 295 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 SPXQ9BT56 116 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 PRO0461Q9UI25 63 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 MYO18BQ8IUG5 2567 aa7.28□□□□□ -1.24
SS18-205ENST00000542420 ZNF462Q96JM2 2506 aa7.27□□□□□ -1.24
SS18-205ENST00000542420 FLNCQ14315 2725 aa7.27□□□□□ -1.24
SS18-205ENST00000542420 DNAJC9-AS1A6NH13 148 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 F8W1H4 67 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 M0QY20 66 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 ZNF415Q09FC8 603 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 DEFB114Q30KQ6 69 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 RNF183Q96D59 192 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 ERG28Q9UKR5 140 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 SDHAF1A6NFY7 115 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 IGIPA6NJ69 53 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 E9PLD3 99 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 J3QR89 54 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 DEFB131AP59861 70 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 PCP2Q8IVA1 136 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 KLHL30-AS1Q8NEE0 82 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 TM2D2Q9BX73 214 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 MAP6D1Q9H9H5 199 aa7.27□□□□□ -1.25
SS18-205ENST00000542420 M0R2P5 195 aa7.26□□□□□ -1.25
SS18-205ENST00000542420 RHODO00212 210 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 112.2 ms