RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 HIST1H4GQ99525 98 aa11.13□□□□□ -0.63
DDX55-209ENST00000542286 CRIP2P52943 208 aaPredicted RBP11.12□□□□□ -0.63
DDX55-209ENST00000542286 SYT8Q8NBV8 401 aa11.12□□□□□ -0.63
DDX55-209ENST00000542286 OR10J6PQ8NGY7 276 aa11.12□□□□□ -0.63
DDX55-209ENST00000542286 RPL39LQ96EH5 51 aaKnown RBP11.12□□□□□ -0.63
DDX55-209ENST00000542286 IGLV1-40P01703 118 aa11.11□□□□□ -0.63
DDX55-209ENST00000542286 TAL2Q16559 108 aa11.11□□□□□ -0.63
DDX55-209ENST00000542286 S100A4P26447 101 aaKnown RBP11.11□□□□□ -0.63
DDX55-209ENST00000542286 FOXI1Q12951 378 aa11.11□□□□□ -0.63
DDX55-209ENST00000542286 NRACQ8N912 160 aa11.11□□□□□ -0.63
DDX55-209ENST00000542286 JPT2Q9H910 190 aa11.11□□□□□ -0.63
DDX55-209ENST00000542286 MRPL35Q9NZE8 188 aaKnown RBP11.11□□□□□ -0.63
DDX55-209ENST00000542286 ATP5LO75964 103 aa11.11□□□□□ -0.63
DDX55-209ENST00000542286 SPINK8P0C7L1 97 aa11.11□□□□□ -0.63
DDX55-209ENST00000542286 LINC01546A6NGU7 62 aa11.1□□□□□ -0.63
DDX55-209ENST00000542286 ZNF418Q8TF45 676 aaPredicted RBP11.1□□□□□ -0.63
DDX55-209ENST00000542286 CDIP1Q9H305 208 aa11.1□□□□□ -0.63
DDX55-209ENST00000542286 NXT2Q9NPJ8 142 aaKnown RBP11.1□□□□□ -0.63
DDX55-209ENST00000542286 BEX4Q9NWD9 120 aaPredicted RBP11.1□□□□□ -0.63
DDX55-209ENST00000542286 TRAV12-2A0A075B6T6 113 aa11.1□□□□□ -0.63
DDX55-209ENST00000542286 MGPP08493 103 aa11.1□□□□□ -0.63
DDX55-209ENST00000542286 ZNF688P0C7X2 276 aa11.1□□□□□ -0.63
DDX55-209ENST00000542286 HLA-DRB4P13762 266 aa11.1□□□□□ -0.63
DDX55-209ENST00000542286 SRSF2Q01130 221 aaKnown RBP11.1□□□□□ -0.63
DDX55-209ENST00000542286 USMG5Q96IX5 58 aa11.1□□□□□ -0.63
DDX55-209ENST00000542286 HLA-DRB4X5D2U9 266 aa11.1□□□□□ -0.63
DDX55-209ENST00000542286 DAZ1Q9NQZ3 744 aaKnown RBP11.09□□□□□ -0.63
DDX55-209ENST00000542286 CYSLTR1Q9Y271 337 aa11.09□□□□□ -0.63
DDX55-209ENST00000542286 JMJD1CQ15652 2540 aa11.09□□□□□ -0.63
DDX55-209ENST00000542286 IGLV2-18A0A075B6J9 118 aa11.09□□□□□ -0.63
DDX55-209ENST00000542286 CFHR3Q02985 330 aa11.09□□□□□ -0.63
DDX55-209ENST00000542286 C18orf65Q6ZTR6 163 aa11.09□□□□□ -0.63
DDX55-209ENST00000542286 MRPL53Q96EL3 112 aaKnown RBP11.09□□□□□ -0.63
DDX55-209ENST00000542286 MT-ATP8P03928 68 aa11.08□□□□□ -0.64
DDX55-209ENST00000542286 ITPR2Q14571 2701 aa11.08□□□□□ -0.64
DDX55-209ENST00000542286 DEFB136Q30KP8 78 aa11.08□□□□□ -0.64
DDX55-209ENST00000542286 C1QTNF4Q9BXJ3 329 aa11.08□□□□□ -0.64
DDX55-209ENST00000542286 TRAV12-3A0A0B4J271 114 aa11.07□□□□□ -0.64
DDX55-209ENST00000542286 NFE4Q86UQ8 179 aa11.07□□□□□ -0.64
DDX55-209ENST00000542286 DUX3Q96PT4 197 aa11.07□□□□□ -0.64
DDX55-209ENST00000542286 PHLDA3Q9Y5J5 127 aa11.07□□□□□ -0.64
DDX55-209ENST00000542286 TRBV7-3A0A075B6L6 115 aa11.07□□□□□ -0.64
DDX55-209ENST00000542286 SYNJ2BPP57105 145 aa11.07□□□□□ -0.64
DDX55-209ENST00000542286 A0A096LNT2 108 aa11.06□□□□□ -0.64
DDX55-209ENST00000542286 PSMB8P28062 276 aa11.06□□□□□ -0.64
DDX55-209ENST00000542286 SMCPP49901 116 aaPredicted RBP11.06□□□□□ -0.64
DDX55-209ENST00000542286 MORN3Q6PF18 240 aaPredicted RBP11.06□□□□□ -0.64
DDX55-209ENST00000542286 LINC00477Q96M19 166 aa11.06□□□□□ -0.64
DDX55-209ENST00000542286 CR1P17927 2039 aa11.06□□□□□ -0.64
DDX55-209ENST00000542286 HOXA3O43365 443 aaPredicted RBP11.06□□□□□ -0.64
DDX55-209ENST00000542286 RNASE3P12724 160 aaKnown RBP11.06□□□□□ -0.64
DDX55-209ENST00000542286 MYOZ3Q8TDC0 251 aa11.06□□□□□ -0.64
DDX55-209ENST00000542286 TRAV21A0A0B4J279 112 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 FHL3Q13643 280 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 CFAP126Q5VTH2 177 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 HIST2H2BCQ6DN03 193 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 Q8N8P6 123 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 LINC01356Q8N9X3 169 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 PGPEP1Q9NXJ5 209 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 A0A087WWL8 130 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 OVOL1O14753 267 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 GATA3P23771 443 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 XGP55808 180 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 DCANP1Q8TF63 244 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 RASL10AQ92737 203 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 ASIPP42127 132 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 Q6ZUT4 128 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 RNF183Q96D59 192 aa11.05□□□□□ -0.64
DDX55-209ENST00000542286 A0A087WX48 190 aa11.04□□□□□ -0.64
DDX55-209ENST00000542286 TSPAN13O95857 204 aa11.04□□□□□ -0.64
DDX55-209ENST00000542286 PRM2P04554 102 aa11.04□□□□□ -0.64
DDX55-209ENST00000542286 ATP6V0E2Q8NHE4 81 aa11.04□□□□□ -0.64
DDX55-209ENST00000542286 SFTA2Q6UW10 78 aa11.04□□□□□ -0.64
DDX55-209ENST00000542286 IGHV4OR15-8A0A075B7B6 117 aa11.03□□□□□ -0.64
DDX55-209ENST00000542286 A0A087WW49 117 aa11.03□□□□□ -0.64
DDX55-209ENST00000542286 DLX4Q92988 240 aaPredicted RBP11.03□□□□□ -0.64
DDX55-209ENST00000542286 H3BUA1 57 aa11.03□□□□□ -0.64
DDX55-209ENST00000542286 COX6B1P14854 86 aa11.03□□□□□ -0.64
DDX55-209ENST00000542286 LAGE3Q14657 143 aa11.03□□□□□ -0.64
DDX55-209ENST00000542286 PTH2Q96A98 100 aa11.03□□□□□ -0.64
DDX55-209ENST00000542286 MYMXA0A1B0GTQ4 84 aa11.02□□□□□ -0.64
DDX55-209ENST00000542286 FAM19A4Q96LR4 140 aa11.02□□□□□ -0.64
DDX55-209ENST00000542286 CD7P09564 240 aa11.02□□□□□ -0.65
DDX55-209ENST00000542286 HTN1P15515 57 aa11.02□□□□□ -0.65
DDX55-209ENST00000542286 PLNP26678 52 aa11.02□□□□□ -0.65
DDX55-209ENST00000542286 PSMB2P49721 201 aa11.02□□□□□ -0.65
DDX55-209ENST00000542286 ERG28Q9UKR5 140 aa11.02□□□□□ -0.65
DDX55-209ENST00000542286 LOC107984156A0A0G2JMH3 177 aa11.01□□□□□ -0.65
DDX55-209ENST00000542286 OR11H12B2RN74 326 aa11.01□□□□□ -0.65
DDX55-209ENST00000542286 SPINK13Q1W4C9 94 aa11.01□□□□□ -0.65
DDX55-209ENST00000542286 FAM74A4Q5TZK3 123 aa11.01□□□□□ -0.65
DDX55-209ENST00000542286 ARL17AQ8IVW1 177 aa11.01□□□□□ -0.65
DDX55-209ENST00000542286 OR11H1Q8NG94 326 aa11.01□□□□□ -0.65
DDX55-209ENST00000542286 OR11H2Q8NH07 326 aa11.01□□□□□ -0.65
DDX55-209ENST00000542286 HELZ2Q9BYK8 2649 aaKnown RBP11.01□□□□□ -0.65
DDX55-209ENST00000542286 LINC01549A6NIU2 74 aa11.01□□□□□ -0.65
DDX55-209ENST00000542286 ZFP2Q6ZN57 461 aa11.01□□□□□ -0.65
DDX55-209ENST00000542286 SMIM2Q9BVW6 85 aa11.01□□□□□ -0.65
DDX55-209ENST00000542286 MDFICQ9P1T7 246 aa11.01□□□□□ -0.65
DDX55-209ENST00000542286 IGHV4-4A0A075B6R2 117 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms