RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 C11orf21Q9P2W6 132 aa10.18□□□□□ -0.78
RTN3-211ENST00000542238 A0A087WWC5 75 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 GAGE12JA6NER3 117 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 RBFOX3A6NFN3 312 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 MBP02144 154 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 ZNF80P51504 273 aaPredicted RBP10.17□□□□□ -0.78
RTN3-211ENST00000542238 GAGE1Q13065 139 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 GAGE4Q13068 117 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 GAGE5Q13069 117 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 GAGE13Q4V321 117 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 SCXQ7RTU7 201 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 Q8N976 141 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 BAALCQ8WXS3 180 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 BIN3Q9NQY0 253 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 URGCP-MRPS24S4R325 110 aa10.17□□□□□ -0.78
RTN3-211ENST00000542238 A8MWV9 139 aa10.16□□□□□ -0.78
RTN3-211ENST00000542238 HMGB3O15347 200 aaKnown RBP10.16□□□□□ -0.78
RTN3-211ENST00000542238 SEC11BP0C7V7 166 aa10.16□□□□□ -0.78
RTN3-211ENST00000542238 ATP6V0CP27449 155 aa10.16□□□□□ -0.78
RTN3-211ENST00000542238 LINC01620Q4KN68 170 aa10.16□□□□□ -0.78
RTN3-211ENST00000542238 ZFP2Q6ZN57 461 aa10.16□□□□□ -0.78
RTN3-211ENST00000542238 CBLN2Q8IUK8 224 aa10.16□□□□□ -0.78
RTN3-211ENST00000542238 C5orf17Q8NAS9 161 aa10.16□□□□□ -0.78
RTN3-211ENST00000542238 OR10G9Q8NGN4 311 aa10.16□□□□□ -0.78
RTN3-211ENST00000542238 OR10G7Q8NGN6 311 aa10.16□□□□□ -0.78
RTN3-211ENST00000542238 PSG8Q9UQ74 426 aa10.16□□□□□ -0.78
RTN3-211ENST00000542238 TCRAP04437 139 aa10.15□□□□□ -0.78
RTN3-211ENST00000542238 RNASE3P12724 160 aaKnown RBP10.15□□□□□ -0.78
RTN3-211ENST00000542238 S100A4P26447 101 aaKnown RBP10.15□□□□□ -0.78
RTN3-211ENST00000542238 RAB5CP51148 216 aa10.15□□□□□ -0.78
RTN3-211ENST00000542238 FGF8P55075 233 aaPredicted RBP10.15□□□□□ -0.78
RTN3-211ENST00000542238 RAB2AP61019 212 aa10.15□□□□□ -0.78
RTN3-211ENST00000542238 CYB561D1Q8N8Q1 229 aa10.15□□□□□ -0.78
RTN3-211ENST00000542238 TMEM75Q8N9X5 138 aa10.15□□□□□ -0.78
RTN3-211ENST00000542238 CHAC1Q9BUX1 264 aa10.15□□□□□ -0.78
RTN3-211ENST00000542238 PARLQ9H300 379 aa10.15□□□□□ -0.78
RTN3-211ENST00000542238 UMAD1C9J7I0 102 aa10.14□□□□□ -0.79
RTN3-211ENST00000542238 OXTP01178 125 aa10.14□□□□□ -0.79
RTN3-211ENST00000542238 ARL14EPLP0DKL9 152 aa10.14□□□□□ -0.79
RTN3-211ENST00000542238 PEA15Q15121 130 aa10.14□□□□□ -0.79
RTN3-211ENST00000542238 C15orf54Q8N8G6 183 aa10.14□□□□□ -0.79
RTN3-211ENST00000542238 HSD17B11Q8NBQ5 300 aa10.14□□□□□ -0.79
RTN3-211ENST00000542238 SMCO4Q9NRQ5 59 aa10.14□□□□□ -0.79
RTN3-211ENST00000542238 DNAH8Q96JB1 4490 aa10.14□□□□□ -0.79
RTN3-211ENST00000542238 IGKV2D-24A0A075B6R9 120 aa10.13□□□□□ -0.79
RTN3-211ENST00000542238 LINC00694P0DN24 101 aa10.13□□□□□ -0.79
RTN3-211ENST00000542238 CDC34P49427 236 aaPredicted RBP10.13□□□□□ -0.79
RTN3-211ENST00000542238 PIK3CD-AS1Q5SR53 167 aa10.13□□□□□ -0.79
RTN3-211ENST00000542238 SAPCD1Q5SSQ6 148 aa10.13□□□□□ -0.79
RTN3-211ENST00000542238 PRNTQ86SH4 94 aa10.13□□□□□ -0.79
RTN3-211ENST00000542238 COLCA2A8K830 154 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 IGLV2-11P01706 119 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 STAG3L2P0CL84 134 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 STAG3L3P0CL85 134 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 ASIPP42127 132 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 RAB5BP61020 215 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 SUMO1P63165 101 aaKnown RBP10.11□□□□□ -0.79
RTN3-211ENST00000542238 KCNIP4Q6PIL6 250 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 CIRBP-AS1Q8TBR5 109 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 LINC00479Q96M42 142 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 SAMD10Q9BYL1 202 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 SMDT1Q9H4I9 107 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 KLK12Q9UKR0 248 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 EPDR1Q9UM22 224 aa10.11□□□□□ -0.79
RTN3-211ENST00000542238 C9JQL5 133 aa10.1□□□□□ -0.79
RTN3-211ENST00000542238 GCHFRP30047 84 aa10.1□□□□□ -0.79
RTN3-211ENST00000542238 CTAG1AP78358 180 aa10.1□□□□□ -0.79
RTN3-211ENST00000542238 S100A12P80511 92 aa10.1□□□□□ -0.79
RTN3-211ENST00000542238 ELOBQ15370 118 aa10.1□□□□□ -0.79
RTN3-211ENST00000542238 NIT1Q86X76 327 aa10.1□□□□□ -0.79
RTN3-211ENST00000542238 C14orf178Q8N769 122 aaPredicted RBP10.1□□□□□ -0.79
RTN3-211ENST00000542238 PLA2G2DQ9UNK4 145 aa10.1□□□□□ -0.79
RTN3-211ENST00000542238 A0A087WX48 190 aa10.09□□□□□ -0.79
RTN3-211ENST00000542238 FABP5P3A8MUU1 101 aa10.09□□□□□ -0.79
RTN3-211ENST00000542238 RHODO00212 210 aa10.09□□□□□ -0.79
RTN3-211ENST00000542238 KRTAP10-4P60372 401 aaPredicted RBP10.09□□□□□ -0.79
RTN3-211ENST00000542238 AKR1C8PQ5T2L2 129 aa10.09□□□□□ -0.79
RTN3-211ENST00000542238 RAB24Q969Q5 203 aa10.09□□□□□ -0.79
RTN3-211ENST00000542238 UBE2WQ96B02 151 aa10.09□□□□□ -0.79
RTN3-211ENST00000542238 TMEM167BQ9NRX6 74 aa10.09□□□□□ -0.79
RTN3-211ENST00000542238 Q9UF83 564 aa10.09□□□□□ -0.79
RTN3-211ENST00000542238 IGKV3D-20A0A0C4DH25 116 aa10.08□□□□□ -0.8
RTN3-211ENST00000542238 C1orf196B1AJZ1 125 aa10.08□□□□□ -0.8
RTN3-211ENST00000542238 IGLV2-8P01709 118 aa10.08□□□□□ -0.8
RTN3-211ENST00000542238 MT-ND4LP03901 98 aa10.08□□□□□ -0.8
RTN3-211ENST00000542238 C14orf177Q52M58 125 aa10.08□□□□□ -0.8
RTN3-211ENST00000542238 UFSP1Q6NVU6 142 aa10.08□□□□□ -0.8
RTN3-211ENST00000542238 SFT2D1Q8WV19 159 aa10.08□□□□□ -0.8
RTN3-211ENST00000542238 HIST1H2BAQ96A08 127 aa10.08□□□□□ -0.8
RTN3-211ENST00000542238 CHCHD7Q9BUK0 85 aa10.08□□□□□ -0.8
RTN3-211ENST00000542238 ACTR3CQ9C0K3 210 aaPredicted RBP10.08□□□□□ -0.8
RTN3-211ENST00000542238 JPT2Q9H910 190 aa10.08□□□□□ -0.8
RTN3-211ENST00000542238 IL36BQ9NZH7 164 aa10.08□□□□□ -0.8
RTN3-211ENST00000542238 CTXND1A0A1B0GTU2 59 aa10.07□□□□□ -0.8
RTN3-211ENST00000542238 CXorf1O96002 111 aa10.07□□□□□ -0.8
RTN3-211ENST00000542238 RPL35P42766 123 aaKnown RBP10.07□□□□□ -0.8
RTN3-211ENST00000542238 AKR1D1P51857 326 aa10.07□□□□□ -0.8
RTN3-211ENST00000542238 Q0VG73 95 aa10.07□□□□□ -0.8
RTN3-211ENST00000542238 RHEBQ15382 184 aa10.07□□□□□ -0.8
RTN3-211ENST00000542238 FAM74A4Q5TZK3 123 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 381 ms