RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 CXorf1O96002 111 aa10.01□□□□□ -0.81
CLSTN3-213ENST00000541953 FGF8P55075 233 aaPredicted RBP10.01□□□□□ -0.81
CLSTN3-213ENST00000541953 SERTAD4-AS1Q5TG53 156 aa10.01□□□□□ -0.81
CLSTN3-213ENST00000541953 ENHOQ6UWT2 76 aa10.01□□□□□ -0.81
CLSTN3-213ENST00000541953 DAZAP1Q96EP5 407 aaKnown RBP10.01□□□□□ -0.81
CLSTN3-213ENST00000541953 ALG5Q9Y673 324 aa10.01□□□□□ -0.81
CLSTN3-213ENST00000541953 COX11Q9Y6N1 276 aa10.01□□□□□ -0.81
CLSTN3-213ENST00000541953 URGCP-MRPS24S4R325 110 aa10.01□□□□□ -0.81
CLSTN3-213ENST00000541953 TMSB15BA0A087X1C1 80 aa10□□□□□ -0.81
CLSTN3-213ENST00000541953 A0A1W2PRE2 83 aa10□□□□□ -0.81
CLSTN3-213ENST00000541953 PANO1I0J062 215 aa10□□□□□ -0.81
CLSTN3-213ENST00000541953 PEX7O00628 323 aa10□□□□□ -0.81
CLSTN3-213ENST00000541953 OXTP01178 125 aa10□□□□□ -0.81
CLSTN3-213ENST00000541953 UBE2D3P61077 147 aa10□□□□□ -0.81
CLSTN3-213ENST00000541953 UBE2D2P62837 147 aa10□□□□□ -0.81
CLSTN3-213ENST00000541953 DNLZQ5SXM8 178 aa10□□□□□ -0.81
CLSTN3-213ENST00000541953 RMI2Q96E14 147 aa10□□□□□ -0.81
CLSTN3-213ENST00000541953 SFRP2Q96HF1 295 aa10□□□□□ -0.81
CLSTN3-213ENST00000541953 AQP10Q96PS8 301 aa10□□□□□ -0.81
CLSTN3-213ENST00000541953 M0R381 172 aa9.99□□□□□ -0.81
CLSTN3-213ENST00000541953 RHODO00212 210 aa9.99□□□□□ -0.81
CLSTN3-213ENST00000541953 OR11H4Q8NGC9 324 aa9.99□□□□□ -0.81
CLSTN3-213ENST00000541953 ACTR3CQ9C0K3 210 aaPredicted RBP9.99□□□□□ -0.81
CLSTN3-213ENST00000541953 PLA2G2DQ9UNK4 145 aa9.99□□□□□ -0.81
CLSTN3-213ENST00000541953 A0A087WX48 190 aa9.98□□□□□ -0.81
CLSTN3-213ENST00000541953 FAM74A7A6NL05 159 aa9.98□□□□□ -0.81
CLSTN3-213ENST00000541953 IFNA7P01567 189 aa9.98□□□□□ -0.81
CLSTN3-213ENST00000541953 MPV17L2Q567V2 206 aa9.98□□□□□ -0.81
CLSTN3-213ENST00000541953 RPL7L1Q6DKI1 246 aaKnown RBP9.98□□□□□ -0.81
CLSTN3-213ENST00000541953 SYT8Q8NBV8 401 aa9.98□□□□□ -0.81
CLSTN3-213ENST00000541953 TNFSF18Q9UNG2 199 aa9.98□□□□□ -0.81
CLSTN3-213ENST00000541953 LRP2P98164 4655 aa9.98□□□□□ -0.81
CLSTN3-213ENST00000541953 SERF2P84101 59 aa9.97□□□□□ -0.81
CLSTN3-213ENST00000541953 C15orf54Q8N8G6 183 aa9.97□□□□□ -0.81
CLSTN3-213ENST00000541953 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.97□□□□□ -0.81
CLSTN3-213ENST00000541953 USP17L23D6RBM5 183 aa9.96□□□□□ -0.82
CLSTN3-213ENST00000541953 MBP02144 154 aa9.96□□□□□ -0.82
CLSTN3-213ENST00000541953 PRSS1P07477 247 aa9.96□□□□□ -0.82
CLSTN3-213ENST00000541953 MT1HL1P0DM35 61 aa9.96□□□□□ -0.82
CLSTN3-213ENST00000541953 RPL37AP61513 92 aaKnown RBP9.96□□□□□ -0.82
CLSTN3-213ENST00000541953 COX8CQ7Z4L0 72 aa9.96□□□□□ -0.82
CLSTN3-213ENST00000541953 CHCHD7Q9BUK0 85 aa9.96□□□□□ -0.82
CLSTN3-213ENST00000541953 PHLDA3Q9Y5J5 127 aa9.96□□□□□ -0.82
CLSTN3-213ENST00000541953 CTXND1A0A1B0GTU2 59 aa9.95□□□□□ -0.82
CLSTN3-213ENST00000541953 RPL19P84098 196 aaKnown RBP9.95□□□□□ -0.82
CLSTN3-213ENST00000541953 ZNF674Q2M3X9 581 aa9.95□□□□□ -0.82
CLSTN3-213ENST00000541953 LINC01559Q495D7 138 aa9.95□□□□□ -0.82
CLSTN3-213ENST00000541953 NEXN-AS1Q8NBZ9 246 aa9.95□□□□□ -0.82
CLSTN3-213ENST00000541953 C1orf43Q9BWL3 253 aa9.95□□□□□ -0.82
CLSTN3-213ENST00000541953 TRBV7-3A0A075B6L6 115 aa9.94□□□□□ -0.82
CLSTN3-213ENST00000541953 TRBV6-8A0A0A6YYG3 113 aa9.94□□□□□ -0.82
CLSTN3-213ENST00000541953 A6NHS1 94 aa9.94□□□□□ -0.82
CLSTN3-213ENST00000541953 TMEM262E9PQX1 116 aa9.94□□□□□ -0.82
CLSTN3-213ENST00000541953 HLA-DQA1P01909 254 aa9.94□□□□□ -0.82
CLSTN3-213ENST00000541953 DEFA3P59666 94 aa9.94□□□□□ -0.82
CLSTN3-213ENST00000541953 FAM162BQ5T6X4 162 aa9.94□□□□□ -0.82
CLSTN3-213ENST00000541953 KRTAP26-1Q6PEX3 210 aa9.94□□□□□ -0.82
CLSTN3-213ENST00000541953 CLPSL2Q6UWE3 100 aa9.94□□□□□ -0.82
CLSTN3-213ENST00000541953 OR10G8Q8NGN5 311 aa9.94□□□□□ -0.82
CLSTN3-213ENST00000541953 RNF213Q63HN8 5207 aa9.93□□□□□ -0.82
CLSTN3-213ENST00000541953 TRBV10-1A0A0K0K1A3 114 aa9.93□□□□□ -0.82
CLSTN3-213ENST00000541953 TPT1P13693 172 aaKnown RBP9.93□□□□□ -0.82
CLSTN3-213ENST00000541953 DEFA1P59665 94 aa9.93□□□□□ -0.82
CLSTN3-213ENST00000541953 RPL36AP83881 106 aaKnown RBP9.93□□□□□ -0.82
CLSTN3-213ENST00000541953 NTM-AS1Q6ZSK4 140 aa9.93□□□□□ -0.82
CLSTN3-213ENST00000541953 OR10AG1Q8NH19 301 aa9.93□□□□□ -0.82
CLSTN3-213ENST00000541953 RPL36ALQ969Q0 106 aaKnown RBP9.93□□□□□ -0.82
CLSTN3-213ENST00000541953 HIST1H2BAQ96A08 127 aa9.93□□□□□ -0.82
CLSTN3-213ENST00000541953 MUC21A0A0G2JKD1 596 aa9.92□□□□□ -0.82
CLSTN3-213ENST00000541953 MUC21A0A140T8X8 626 aa9.92□□□□□ -0.82
CLSTN3-213ENST00000541953 PTTG1O95997 202 aa9.92□□□□□ -0.82
CLSTN3-213ENST00000541953 LTAP01374 205 aa9.92□□□□□ -0.82
CLSTN3-213ENST00000541953 SEC11BP0C7V7 166 aa9.92□□□□□ -0.82
CLSTN3-213ENST00000541953 Q0VG73 95 aa9.92□□□□□ -0.82
CLSTN3-213ENST00000541953 ELOBQ15370 118 aa9.92□□□□□ -0.82
CLSTN3-213ENST00000541953 PRR27Q6MZM9 219 aa9.92□□□□□ -0.82
CLSTN3-213ENST00000541953 ZFP82Q8N141 532 aa9.92□□□□□ -0.82
CLSTN3-213ENST00000541953 G3V3Q6 166 aa9.91□□□□□ -0.82
CLSTN3-213ENST00000541953 CRPP02741 224 aa9.91□□□□□ -0.82
CLSTN3-213ENST00000541953 ANGP03950 147 aaKnown RBP9.91□□□□□ -0.82
CLSTN3-213ENST00000541953 ZFP30Q9Y2G7 519 aa9.91□□□□□ -0.82
CLSTN3-213ENST00000541953 MAP1LC3B2A6NCE7 125 aa9.9□□□□□ -0.82
CLSTN3-213ENST00000541953 ZNF56Q15929 161 aa9.9□□□□□ -0.82
CLSTN3-213ENST00000541953 C14orf177Q52M58 125 aa9.9□□□□□ -0.82
CLSTN3-213ENST00000541953 KCNIP4Q6PIL6 250 aa9.9□□□□□ -0.82
CLSTN3-213ENST00000541953 FMC1Q96HJ9 113 aa9.9□□□□□ -0.82
CLSTN3-213ENST00000541953 MAP1LC3BQ9GZQ8 125 aa9.9□□□□□ -0.82
CLSTN3-213ENST00000541953 FXYD6-FXYD2A0A087WZ82 144 aa9.89□□□□□ -0.83
CLSTN3-213ENST00000541953 FHITP49789 147 aa9.89□□□□□ -0.83
CLSTN3-213ENST00000541953 RAB4BP61018 213 aa9.89□□□□□ -0.83
CLSTN3-213ENST00000541953 UBE2G1P62253 170 aa9.89□□□□□ -0.83
CLSTN3-213ENST00000541953 C9orf163Q8N9P6 203 aa9.89□□□□□ -0.83
CLSTN3-213ENST00000541953 CHCHD5Q9BSY4 110 aa9.89□□□□□ -0.83
CLSTN3-213ENST00000541953 MED28Q9H204 178 aa9.89□□□□□ -0.83
CLSTN3-213ENST00000541953 TRBV6-1A0A0K0K1D8 114 aa9.88□□□□□ -0.83
CLSTN3-213ENST00000541953 GAGE6Q13070 117 aa9.88□□□□□ -0.83
CLSTN3-213ENST00000541953 CYTL1Q9NRR1 136 aa9.88□□□□□ -0.83
CLSTN3-213ENST00000541953 PRR34Q9NV39 138 aa9.88□□□□□ -0.83
CLSTN3-213ENST00000541953 GIPP09681 153 aaPredicted RBP9.87□□□□□ -0.83
CLSTN3-213ENST00000541953 SSTP61278 116 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 247.6 ms