RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 NACAE9PAV3 2078 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 AVPP01185 164 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 SPINK8P0C7L1 97 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 SUMO2P61956 95 aaKnown RBP9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 BAALCQ8WXS3 180 aa9.47□□□□□ -0.89
SFSWAP-208ENST00000539506 F5H697 171 aa9.46□□□□□ -0.89
SFSWAP-208ENST00000539506 H3BUX3 64 aa9.46□□□□□ -0.89
SFSWAP-208ENST00000539506 SCGB1C2P0DMR2 95 aa9.46□□□□□ -0.89
SFSWAP-208ENST00000539506 A0A1B0GV72 72 aa9.46□□□□□ -0.9
SFSWAP-208ENST00000539506 PLNP26678 52 aa9.46□□□□□ -0.9
SFSWAP-208ENST00000539506 FOXI1Q12951 378 aa9.46□□□□□ -0.9
SFSWAP-208ENST00000539506 TMEM170BQ5T4T1 132 aa9.46□□□□□ -0.9
SFSWAP-208ENST00000539506 FAM74A4Q5TZK3 123 aa9.46□□□□□ -0.9
SFSWAP-208ENST00000539506 ZFAND2AQ8N6M9 145 aa9.46□□□□□ -0.9
SFSWAP-208ENST00000539506 TSPAN13O95857 204 aa9.45□□□□□ -0.9
SFSWAP-208ENST00000539506 CCL19Q99731 98 aa9.45□□□□□ -0.9
SFSWAP-208ENST00000539506 PIMREGQ9BSJ6 248 aa9.45□□□□□ -0.9
SFSWAP-208ENST00000539506 GEMIN7Q9H840 131 aaKnown RBP9.45□□□□□ -0.9
SFSWAP-208ENST00000539506 BEX4Q9NWD9 120 aaPredicted RBP9.45□□□□□ -0.9
SFSWAP-208ENST00000539506 A6NDX4 124 aa9.45□□□□□ -0.9
SFSWAP-208ENST00000539506 C11orf86A6NJI1 115 aa9.45□□□□□ -0.9
SFSWAP-208ENST00000539506 IGHG2P01859 326 aa9.45□□□□□ -0.9
SFSWAP-208ENST00000539506 CRYBA4P53673 196 aa9.45□□□□□ -0.9
SFSWAP-208ENST00000539506 XGP55808 180 aa9.45□□□□□ -0.9
SFSWAP-208ENST00000539506 NEXN-AS1Q8NBZ9 246 aa9.44□□□□□ -0.9
SFSWAP-208ENST00000539506 NRGNQ92686 78 aa9.44□□□□□ -0.9
SFSWAP-208ENST00000539506 IGHV4-4A0A075B6R2 117 aa9.44□□□□□ -0.9
SFSWAP-208ENST00000539506 SPATA25Q9BR10 227 aa9.44□□□□□ -0.9
SFSWAP-208ENST00000539506 ZNF256Q9Y2P7 627 aaPredicted RBP9.44□□□□□ -0.9
SFSWAP-208ENST00000539506 CENPEQ02224 2701 aa9.44□□□□□ -0.9
SFSWAP-208ENST00000539506 NDUFA4O00483 81 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 DOPEY1Q5JWR5 2465 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 LINC00477Q96M19 166 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 MUC4Q99102 2169 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 CDIP1Q9H305 208 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 MXRA5Q9NR99 2828 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 ADARB2-AS1A8MUL3 147 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 TCL1BO95988 128 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 TSPEAR-AS2P59090 65 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 C9orf139Q6ZV77 190 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 CARD19Q96LW7 228 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 SPXQ9BT56 116 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 TP53TG1Q9Y2A0 90 aa9.43□□□□□ -0.9
SFSWAP-208ENST00000539506 CACNA1AO00555 2505 aa9.42□□□□□ -0.9
SFSWAP-208ENST00000539506 ATP5J2P56134 94 aa9.42□□□□□ -0.9
SFSWAP-208ENST00000539506 CFAP126Q5VTH2 177 aa9.42□□□□□ -0.9
SFSWAP-208ENST00000539506 TRPT1Q86TN4 253 aaKnown RBP9.42□□□□□ -0.9
SFSWAP-208ENST00000539506 DLX4Q92988 240 aaPredicted RBP9.42□□□□□ -0.9
SFSWAP-208ENST00000539506 FAM19A4Q96LR4 140 aa9.42□□□□□ -0.9
SFSWAP-208ENST00000539506 ZNF580Q9UK33 172 aa9.42□□□□□ -0.9
SFSWAP-208ENST00000539506 CRYGDP07320 174 aa9.41□□□□□ -0.9
SFSWAP-208ENST00000539506 TOMM6Q96B49 74 aa9.41□□□□□ -0.9
SFSWAP-208ENST00000539506 IGLV1-40P01703 118 aa9.41□□□□□ -0.9
SFSWAP-208ENST00000539506 C10orf99Q6UWK7 81 aa9.41□□□□□ -0.9
SFSWAP-208ENST00000539506 TSHBP01222 138 aa9.4□□□□□ -0.9
SFSWAP-208ENST00000539506 HTN1P15515 57 aa9.4□□□□□ -0.9
SFSWAP-208ENST00000539506 NPC2P61916 151 aa9.4□□□□□ -0.9
SFSWAP-208ENST00000539506 C1QTNF4Q9BXJ3 329 aa9.4□□□□□ -0.9
SFSWAP-208ENST00000539506 POLQO75417 2590 aa9.4□□□□□ -0.9
SFSWAP-208ENST00000539506 MSMBP08118 114 aa9.4□□□□□ -0.9
SFSWAP-208ENST00000539506 CFHR3Q02985 330 aa9.4□□□□□ -0.9
SFSWAP-208ENST00000539506 RNF183Q96D59 192 aa9.4□□□□□ -0.9
SFSWAP-208ENST00000539506 RHPN1-AS1Q9BWJ2 59 aa9.4□□□□□ -0.9
SFSWAP-208ENST00000539506 USP9YO00507 2555 aaPredicted RBP9.4□□□□□ -0.9
SFSWAP-208ENST00000539506 MYO18BQ8IUG5 2567 aa9.4□□□□□ -0.9
SFSWAP-208ENST00000539506 ASIPP42127 132 aa9.4□□□□□ -0.91
SFSWAP-208ENST00000539506 ORMDL2Q53FV1 153 aa9.4□□□□□ -0.91
SFSWAP-208ENST00000539506 USMG5Q96IX5 58 aa9.4□□□□□ -0.91
SFSWAP-208ENST00000539506 A4D1N5 150 aa9.39□□□□□ -0.91
SFSWAP-208ENST00000539506 RNF223E7ERA6 249 aa9.39□□□□□ -0.91
SFSWAP-208ENST00000539506 BRI3O95415 125 aa9.39□□□□□ -0.91
SFSWAP-208ENST00000539506 TAL2Q16559 108 aa9.39□□□□□ -0.91
SFSWAP-208ENST00000539506 DPH3P1Q9H4G8 78 aa9.39□□□□□ -0.91
SFSWAP-208ENST00000539506 LENEPQ9Y5L5 61 aa9.39□□□□□ -0.91
SFSWAP-208ENST00000539506 ZNF469Q96JG9 3925 aaPredicted RBP9.39□□□□□ -0.91
SFSWAP-208ENST00000539506 TRAV12-2A0A075B6T6 113 aa9.39□□□□□ -0.91
SFSWAP-208ENST00000539506 TRAV2A0A0B4J234 112 aa9.39□□□□□ -0.91
SFSWAP-208ENST00000539506 OR10J6PQ8NGY7 276 aa9.39□□□□□ -0.91
SFSWAP-208ENST00000539506 CFC1BP0CG36 223 aa9.38□□□□□ -0.91
SFSWAP-208ENST00000539506 CFC1P0CG37 223 aa9.38□□□□□ -0.91
SFSWAP-208ENST00000539506 RNASE13Q5GAN3 156 aaKnown RBP9.38□□□□□ -0.91
SFSWAP-208ENST00000539506 TRAV12-3A0A0B4J271 114 aa9.38□□□□□ -0.91
SFSWAP-208ENST00000539506 RNASE3P12724 160 aaKnown RBP9.38□□□□□ -0.91
SFSWAP-208ENST00000539506 Q6ZUT4 128 aa9.38□□□□□ -0.91
SFSWAP-208ENST00000539506 NDUFA11Q86Y39 141 aa9.38□□□□□ -0.91
SFSWAP-208ENST00000539506 H3BUA1 57 aa9.38□□□□□ -0.91
SFSWAP-208ENST00000539506 OVOL1O14753 267 aa9.38□□□□□ -0.91
SFSWAP-208ENST00000539506 ANKRD29Q8N6D5 301 aa9.38□□□□□ -0.91
SFSWAP-208ENST00000539506 ZNRF2Q8NHG8 242 aa9.38□□□□□ -0.91
SFSWAP-208ENST00000539506 TRAV21A0A0B4J279 112 aa9.37□□□□□ -0.91
SFSWAP-208ENST00000539506 A0A0J9YY99 117 aa9.37□□□□□ -0.91
SFSWAP-208ENST00000539506 C9JAW5 83 aa9.37□□□□□ -0.91
SFSWAP-208ENST00000539506 MRAP2Q96G30 205 aa9.37□□□□□ -0.91
SFSWAP-208ENST00000539506 SS18L2Q9UHA2 77 aa9.37□□□□□ -0.91
SFSWAP-208ENST00000539506 SETD2Q9BYW2 2564 aaPredicted RBP9.37□□□□□ -0.91
SFSWAP-208ENST00000539506 IGLV4-69A0A075B6H9 119 aa9.37□□□□□ -0.91
SFSWAP-208ENST00000539506 IGHV3-73A0A0B4J1V6 119 aa9.37□□□□□ -0.91
SFSWAP-208ENST00000539506 TRAV12-1A0A0B4J245 112 aa9.37□□□□□ -0.91
SFSWAP-208ENST00000539506 ELANEP08246 267 aa9.37□□□□□ -0.91
SFSWAP-208ENST00000539506 APRG1Q8IVJ8 170 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms