RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 GAGE12JA6NER3 117 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 SNAI2O43623 268 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 EIF5AP63241 154 aaKnown RBP7.14□□□□□ -1.27
CD44-227ENST00000528086 GAGE1Q13065 139 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 GAGE4Q13068 117 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 GAGE5Q13069 117 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 GAGE13Q4V321 117 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 LINC01556Q5JQF7 62 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 SLC51BQ86UW2 128 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 ATP6V0E2Q8NHE4 81 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 PRADC1Q9BSG0 188 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 MSRB1Q9NZV6 116 aa7.14□□□□□ -1.27
CD44-227ENST00000528086 A0A087WTM6 91 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 C19orf71A6NCJ1 209 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 LRCOL1A6NCL2 159 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 IBA57-AS1B1ANH7 110 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 M0R381 172 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 S100A9P06702 114 aaKnown RBP7.13□□□□□ -1.27
CD44-227ENST00000528086 CXCL1P09341 107 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 GZMBP10144 247 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 RAB5CP51148 216 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 LELP1Q5T871 98 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 SH2D6Q7Z4S9 175 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 DNAJC30Q96LL9 226 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 GTSF1LQ9H1H1 148 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 MANBALQ9NQG1 85 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 KIF25-AS1Q9Y6Z4 181 aa7.13□□□□□ -1.27
CD44-227ENST00000528086 CDK2AP2O75956 126 aa7.12□□□□□ -1.27
CD44-227ENST00000528086 NKX2-5P52952 324 aaPredicted RBP7.12□□□□□ -1.27
CD44-227ENST00000528086 WFDC2Q14508 124 aa7.12□□□□□ -1.27
CD44-227ENST00000528086 CENPWQ5EE01 88 aa7.12□□□□□ -1.27
CD44-227ENST00000528086 PRR27Q6MZM9 219 aa7.12□□□□□ -1.27
CD44-227ENST00000528086 BOLA1Q9Y3E2 137 aa7.12□□□□□ -1.27
CD44-227ENST00000528086 PHLDA3Q9Y5J5 127 aa7.12□□□□□ -1.27
CD44-227ENST00000528086 RBFOX3A6NFN3 312 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 IGHV3-30P01768 117 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 IGHV3-33P01772 117 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 OR5AL1P0C617 328 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 IGLC6P0CF74 106 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 IGHV3-30-3P0DP02 117 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 IGHV3-30-5P0DP03 117 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 BCL2P10415 239 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 EVI2AP22794 236 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 MEF2BQ02080 365 aaPredicted RBP7.11□□□□□ -1.27
CD44-227ENST00000528086 FAM74A4Q5TZK3 123 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 AKAP14Q86UN6 197 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 MAPKAPK5-AS1Q8N8E1 139 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 LYPD6BQ8NI32 183 aa7.11□□□□□ -1.27
CD44-227ENST00000528086 K7EP13 123 aa7.1□□□□□ -1.27
CD44-227ENST00000528086 RHODO00212 210 aa7.1□□□□□ -1.27
CD44-227ENST00000528086 KRTAP10-1P60331 282 aa7.1□□□□□ -1.27
CD44-227ENST00000528086 UBE2D3P61077 147 aa7.1□□□□□ -1.27
CD44-227ENST00000528086 UBE2D2P62837 147 aa7.1□□□□□ -1.27
CD44-227ENST00000528086 OR10J3Q5JRS4 329 aa7.1□□□□□ -1.27
CD44-227ENST00000528086 DAZ4Q86SG3 579 aaKnown RBP7.1□□□□□ -1.27
CD44-227ENST00000528086 ZFP82Q8N141 532 aa7.1□□□□□ -1.27
CD44-227ENST00000528086 SYT8Q8NBV8 401 aa7.1□□□□□ -1.27
CD44-227ENST00000528086 DAZ3Q9NR90 486 aaKnown RBP7.1□□□□□ -1.27
CD44-227ENST00000528086 K7EN84 100 aa7.09□□□□□ -1.27
CD44-227ENST00000528086 XGP55808 180 aa7.09□□□□□ -1.27
CD44-227ENST00000528086 ALKAL2Q6UX46 152 aa7.09□□□□□ -1.27
CD44-227ENST00000528086 NEXN-AS1Q8NBZ9 246 aa7.09□□□□□ -1.27
CD44-227ENST00000528086 OR10G8Q8NGN5 311 aa7.09□□□□□ -1.27
CD44-227ENST00000528086 VPS13BQ7Z7G8 4022 aa7.08□□□□□ -1.28
CD44-227ENST00000528086 TRAV9-2A0A087WT02 112 aa7.08□□□□□ -1.28
CD44-227ENST00000528086 TRAV8-6A0A0B4J262 113 aa7.08□□□□□ -1.28
CD44-227ENST00000528086 SSTP61278 116 aa7.08□□□□□ -1.28
CD44-227ENST00000528086 EIF5AL1Q6IS14 154 aaKnown RBP7.08□□□□□ -1.28
CD44-227ENST00000528086 NFE4Q86UQ8 179 aa7.08□□□□□ -1.28
CD44-227ENST00000528086 VAX2Q9UIW0 290 aa7.08□□□□□ -1.28
CD44-227ENST00000528086 TRBV10-1A0A0K0K1A3 114 aa7.07□□□□□ -1.28
CD44-227ENST00000528086 ERVFC1-1P60608 527 aa7.07□□□□□ -1.28
CD44-227ENST00000528086 RAB4BP61018 213 aa7.07□□□□□ -1.28
CD44-227ENST00000528086 NTM-AS1Q6ZSK4 140 aa7.07□□□□□ -1.28
CD44-227ENST00000528086 NIT1Q86X76 327 aa7.07□□□□□ -1.28
CD44-227ENST00000528086 C10orf126Q8N4M7 172 aa7.07□□□□□ -1.28
CD44-227ENST00000528086 OCC1Q8TAD7 63 aa7.07□□□□□ -1.28
CD44-227ENST00000528086 Q9HAA7 133 aa7.07□□□□□ -1.28
CD44-227ENST00000528086 MED9Q9NWA0 146 aa7.07□□□□□ -1.28
CD44-227ENST00000528086 TRBV7-3A0A075B6L6 115 aa7.06□□□□□ -1.28
CD44-227ENST00000528086 PDE6DO43924 150 aa7.06□□□□□ -1.28
CD44-227ENST00000528086 NUDT10Q8NFP7 164 aa7.06□□□□□ -1.28
CD44-227ENST00000528086 OR2D3Q8NGH3 330 aa7.06□□□□□ -1.28
CD44-227ENST00000528086 NUDT11Q96G61 164 aa7.06□□□□□ -1.28
CD44-227ENST00000528086 PGPEP1Q9NXJ5 209 aa7.06□□□□□ -1.28
CD44-227ENST00000528086 M0QY20 66 aa7.05□□□□□ -1.28
CD44-227ENST00000528086 GNG4P50150 75 aa7.05□□□□□ -1.28
CD44-227ENST00000528086 LAGE3Q14657 143 aa7.05□□□□□ -1.28
CD44-227ENST00000528086 FER1L6-AS1Q8NA97 138 aa7.05□□□□□ -1.28
CD44-227ENST00000528086 SMIM12Q96EX1 92 aa7.05□□□□□ -1.28
CD44-227ENST00000528086 RNASE7Q9H1E1 156 aaKnown RBP7.05□□□□□ -1.28
CD44-227ENST00000528086 SPANXN1Q5VSR9 72 aa7.04□□□□□ -1.28
CD44-227ENST00000528086 LYZL1Q6UWQ5 148 aa7.04□□□□□ -1.28
CD44-227ENST00000528086 Q8N1X5 172 aa7.04□□□□□ -1.28
CD44-227ENST00000528086 GTSF1Q8WW33 167 aa7.04□□□□□ -1.28
CD44-227ENST00000528086 A0A087WWC5 75 aa7.03□□□□□ -1.28
CD44-227ENST00000528086 TRBV6-8A0A0A6YYG3 113 aa7.03□□□□□ -1.28
CD44-227ENST00000528086 TEX46H3BTG2 121 aa7.03□□□□□ -1.28
CD44-227ENST00000528086 IFNA1P01562 189 aa7.03□□□□□ -1.28
CD44-227ENST00000528086 CTRLP40313 264 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms