RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 RBMY1EA6NEQ0 496 aaKnown RBP2.25□□□□□ -2.05
CD44-217ENST00000525348 BUB1B-PAK6H3BSN5 160 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 J3QRE1 110 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 COX7A2LO14548 114 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 TIMM17BO60830 172 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 IGKV1-5P01602 117 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 HBDP02042 147 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 CCKP06307 115 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 RBMY1DP0C7P1 496 aaKnown RBP2.25□□□□□ -2.05
CD44-217ENST00000525348 RBMY1A1P0DJD3 496 aaKnown RBP2.25□□□□□ -2.05
CD44-217ENST00000525348 LGALS3P17931 250 aaKnown RBP2.25□□□□□ -2.05
CD44-217ENST00000525348 PEBP1P30086 187 aaKnown RBP2.25□□□□□ -2.05
CD44-217ENST00000525348 MP68P56378 58 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 UBE2L3P68036 154 aaKnown RBP2.25□□□□□ -2.05
CD44-217ENST00000525348 HBBP68871 147 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 ZNF791Q3KP31 576 aaPredicted RBP2.25□□□□□ -2.05
CD44-217ENST00000525348 TMEM170BQ5T4T1 132 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 C16orf47Q6ZP98 133 aaPredicted RBP2.25□□□□□ -2.05
CD44-217ENST00000525348 MARCH3Q86UD3 253 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 TOMM6Q96B49 74 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 TIMM17AQ99595 171 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 CCL13Q99616 98 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 C11orf1Q9H5F2 150 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 NHP2Q9NX24 153 aaKnown RBP2.25□□□□□ -2.05
CD44-217ENST00000525348 IL36BQ9NZH7 164 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 V9GY05 133 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 SCN3AQ9NY46 2000 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 MYO9BQ13459 2157 aa2.25□□□□□ -2.05
CD44-217ENST00000525348 BDP1A6H8Y1 2624 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 PLXNB1O43157 2135 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 PLXNA2O75051 1894 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 MYO16Q9Y6X6 1858 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 CFAP54Q96N23 3096 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 COL11A1P12107 1806 aaPredicted RBP2.24□□□□□ -2.05
CD44-217ENST00000525348 KIAA1549LQ6ZVL6 1849 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 TRBV20OR9-2A0A075B6H5 130 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.24□□□□□ -2.05
CD44-217ENST00000525348 IGKV2-28A0A075B6P5 120 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 IGHV3OR15-7A0A075B7D8 119 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 IGHV3OR16-9A0A0B4J2B5 98 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 A6NN06 94 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 KRTAP4-16G5E9R7 235 aaPredicted RBP2.24□□□□□ -2.05
CD44-217ENST00000525348 H7BZZ5 65 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 UBE2L6O14933 153 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 NPYP01303 97 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 IGKV2D-28P01615 120 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 TRBV12-3P01733 135 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 CXCL8P10145 99 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 CIRBPQ14011 172 aaKnown RBP2.24□□□□□ -2.05
CD44-217ENST00000525348 KIAA0087Q14695 138 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 ZNF56Q15929 161 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 TMEM155Q4W5P6 130 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 LINC00643Q86TS7 51 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 WFDC5Q8TCV5 224 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 MGST2Q99735 147 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 PROK2Q9HC23 129 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 GNG13Q9P2W3 67 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 EPDR1Q9UM22 224 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 LRP4O75096 1905 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 TTC28Q96AY4 2481 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 CHD9Q3L8U1 2897 aa2.24□□□□□ -2.05
CD44-217ENST00000525348 TRBV7-3A0A075B6L6 115 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 IGKV1D-17A0A075B6S4 117 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 IGKV1-27A0A075B6S5 117 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 TRBV7-1A0A0A6YYK4 115 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 IGKV1-8A0A0C4DH67 115 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 MYMXA0A1B0GTQ4 84 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 CEBPZOSA8MTT3 80 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 PPYP01298 95 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 LTAP01374 205 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 RNASE2P10153 161 aaKnown RBP2.23□□□□□ -2.05
CD44-217ENST00000525348 NPPCP23582 126 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 RNASE4P34096 147 aaKnown RBP2.23□□□□□ -2.05
CD44-217ENST00000525348 PSMB2P49721 201 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 ATP5EP56381 51 aaPredicted RBP2.23□□□□□ -2.05
CD44-217ENST00000525348 SYNJ2BPP57105 145 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 ZNF117Q03924 483 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 RPL18Q07020 188 aaKnown RBP2.23□□□□□ -2.05
CD44-217ENST00000525348 KISS1Q15726 138 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 PSMG4Q5JS54 123 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 CASC10Q5T4H9 136 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 C6orf201Q7Z4U5 140 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 FAM223AQ8IWN6 122 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 TMEM105Q8N8V8 129 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 DIRC1Q969H9 104 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 CHCHD1Q96BP2 118 aaKnown RBP2.23□□□□□ -2.05
CD44-217ENST00000525348 FAM3DQ96BQ1 224 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 ABHD14BQ96IU4 210 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 TMEM243Q9BU79 118 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 LY96Q9Y6Y9 160 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 PRRC2BQ5JSZ5 2229 aaKnown RBP2.23□□□□□ -2.05
CD44-217ENST00000525348 C5orf42Q9H799 3197 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 PCNX2A6NKB5 2137 aa2.23□□□□□ -2.05
CD44-217ENST00000525348 MYO7AQ13402 2215 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 IGHV1OR21-1A0A087WYE8 117 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 TMSB15BA0A087X1C1 80 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 IGHV6-1A0A0B4J1U7 121 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 IGHV1OR15-9A0A0B4J2B8 117 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 LOC389332A0A1B0GUA5 103 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 PIN1P1O15428 100 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms