RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 A0A096LNT2 108 aa13.35□□□□□ -0.27
CCHCR1-228ENST00000509552 LINC01619G3V211 115 aa13.35□□□□□ -0.27
CCHCR1-228ENST00000509552 LGALS9O00182 355 aa13.35□□□□□ -0.27
CCHCR1-228ENST00000509552 IGSF10Q6WRI0 2623 aa13.35□□□□□ -0.27
CCHCR1-228ENST00000509552 FAM74A4Q5TZK3 123 aa13.35□□□□□ -0.27
CCHCR1-228ENST00000509552 MAPK1IP1LQ8NDC0 245 aa13.35□□□□□ -0.27
CCHCR1-228ENST00000509552 SDHAF1A6NFY7 115 aa13.34□□□□□ -0.27
CCHCR1-228ENST00000509552 SCGB2A2Q13296 93 aa13.34□□□□□ -0.27
CCHCR1-228ENST00000509552 PAPPA-AS1Q5QFB9 102 aa13.34□□□□□ -0.27
CCHCR1-228ENST00000509552 IGHV1OR15-1A0A075B7D0 117 aa13.34□□□□□ -0.27
CCHCR1-228ENST00000509552 TMEM141Q96I45 108 aa13.34□□□□□ -0.27
CCHCR1-228ENST00000509552 PRADC1Q9BSG0 188 aa13.34□□□□□ -0.27
CCHCR1-228ENST00000509552 MDFICQ9P1T7 246 aa13.34□□□□□ -0.27
CCHCR1-228ENST00000509552 COX6B1P14854 86 aa13.33□□□□□ -0.28
CCHCR1-228ENST00000509552 SPINK13Q1W4C9 94 aa13.33□□□□□ -0.28
CCHCR1-228ENST00000509552 Q8N1Y9 231 aa13.33□□□□□ -0.28
CCHCR1-228ENST00000509552 UBE2E2Q96LR5 201 aa13.33□□□□□ -0.28
CCHCR1-228ENST00000509552 TRBV6-5A0A0K0K1A5 114 aa13.33□□□□□ -0.28
CCHCR1-228ENST00000509552 ZNF56Q15929 161 aa13.33□□□□□ -0.28
CCHCR1-228ENST00000509552 TRBV7-3A0A075B6L6 115 aa13.32□□□□□ -0.28
CCHCR1-228ENST00000509552 TRBV27A0A0K0K1C4 114 aa13.32□□□□□ -0.28
CCHCR1-228ENST00000509552 IGIPA6NJ69 53 aa13.32□□□□□ -0.28
CCHCR1-228ENST00000509552 HOXD3P31249 432 aaPredicted RBP13.32□□□□□ -0.28
CCHCR1-228ENST00000509552 PMVKQ15126 192 aa13.32□□□□□ -0.28
CCHCR1-228ENST00000509552 C12orf74Q32Q52 190 aa13.32□□□□□ -0.28
CCHCR1-228ENST00000509552 Q6YL49 198 aa13.32□□□□□ -0.28
CCHCR1-228ENST00000509552 CRYGDP07320 174 aa13.31□□□□□ -0.28
CCHCR1-228ENST00000509552 DUX5Q96PT3 197 aa13.31□□□□□ -0.28
CCHCR1-228ENST00000509552 TIMM17AQ99595 171 aa13.31□□□□□ -0.28
CCHCR1-228ENST00000509552 TSHBP01222 138 aa13.31□□□□□ -0.28
CCHCR1-228ENST00000509552 HERVK_113P61574 105 aa13.31□□□□□ -0.28
CCHCR1-228ENST00000509552 FOXI2Q6ZQN5 318 aa13.31□□□□□ -0.28
CCHCR1-228ENST00000509552 ZNF702PQ9H963 129 aa13.31□□□□□ -0.28
CCHCR1-228ENST00000509552 ZNF815PA8K554 130 aa13.3□□□□□ -0.28
CCHCR1-228ENST00000509552 IGLL5B9A064 214 aa13.3□□□□□ -0.28
CCHCR1-228ENST00000509552 RIPPLY3P57055 190 aa13.3□□□□□ -0.28
CCHCR1-228ENST00000509552 C21orf62-AS1Q17RA5 79 aa13.3□□□□□ -0.28
CCHCR1-228ENST00000509552 DEFB104AQ8WTQ1 72 aa13.3□□□□□ -0.28
CCHCR1-228ENST00000509552 MYO18BQ8IUG5 2567 aa13.3□□□□□ -0.28
CCHCR1-228ENST00000509552 RPL39P62891 51 aaKnown RBP13.3□□□□□ -0.28
CCHCR1-228ENST00000509552 SAP30O75446 220 aa13.29□□□□□ -0.28
CCHCR1-228ENST00000509552 SCGB1D4Q6XE38 83 aa13.29□□□□□ -0.28
CCHCR1-228ENST00000509552 ZNF479Q96JC4 524 aa13.29□□□□□ -0.28
CCHCR1-228ENST00000509552 ZNF256Q9Y2P7 627 aaPredicted RBP13.29□□□□□ -0.28
CCHCR1-228ENST00000509552 IGLV4-69A0A075B6H9 119 aa13.29□□□□□ -0.28
CCHCR1-228ENST00000509552 TRGV11A0A075B6L2 103 aa13.29□□□□□ -0.28
CCHCR1-228ENST00000509552 C11orf86A6NJI1 115 aa13.29□□□□□ -0.28
CCHCR1-228ENST00000509552 M0QY20 66 aa13.29□□□□□ -0.28
CCHCR1-228ENST00000509552 FSHBP01225 129 aa13.29□□□□□ -0.28
CCHCR1-228ENST00000509552 CD300EQ496F6 205 aaPredicted RBP13.29□□□□□ -0.28
CCHCR1-228ENST00000509552 TRPT1Q86TN4 253 aaKnown RBP13.29□□□□□ -0.28
CCHCR1-228ENST00000509552 CRYBG3Q68DQ2 2970 aa13.28□□□□□ -0.28
CCHCR1-228ENST00000509552 HOXA3O43365 443 aaPredicted RBP13.28□□□□□ -0.28
CCHCR1-228ENST00000509552 ZNF876PQ49A33 203 aa13.28□□□□□ -0.28
CCHCR1-228ENST00000509552 TCTEX1D4Q5JR98 221 aa13.28□□□□□ -0.28
CCHCR1-228ENST00000509552 BEX4Q9NWD9 120 aaPredicted RBP13.28□□□□□ -0.28
CCHCR1-228ENST00000509552 ANKRD17O75179 2603 aaKnown RBP13.28□□□□□ -0.28
CCHCR1-228ENST00000509552 IGHV4-31P0DP07 118 aa13.27□□□□□ -0.28
CCHCR1-228ENST00000509552 RNF152Q8N8N0 203 aa13.27□□□□□ -0.28
CCHCR1-228ENST00000509552 UTP20O75691 2785 aaKnown RBP13.27□□□□□ -0.29
CCHCR1-228ENST00000509552 AGRNO00468 2067 aa13.27□□□□□ -0.29
CCHCR1-228ENST00000509552 EMP1P54849 157 aa13.27□□□□□ -0.29
CCHCR1-228ENST00000509552 RHOHQ15669 191 aa13.27□□□□□ -0.29
CCHCR1-228ENST00000509552 A0A1B0GWB2 263 aa13.26□□□□□ -0.29
CCHCR1-228ENST00000509552 MORN3Q6PF18 240 aaPredicted RBP13.26□□□□□ -0.29
CCHCR1-228ENST00000509552 AMTNQ6UX39 209 aa13.26□□□□□ -0.29
CCHCR1-228ENST00000509552 USP9YO00507 2555 aaPredicted RBP13.26□□□□□ -0.29
CCHCR1-228ENST00000509552 TMEM238LA0A1B0GVL6 79 aa13.25□□□□□ -0.29
CCHCR1-228ENST00000509552 A6NJY4 79 aa13.25□□□□□ -0.29
CCHCR1-228ENST00000509552 NSUN5P1Q3KNT7 163 aa13.25□□□□□ -0.29
CCHCR1-228ENST00000509552 SRSF9Q13242 221 aaKnown RBP eCLIP13.25□□□□□ -0.29
CCHCR1-228ENST00000509552 ACACBO00763 2458 aa13.24□□□□□ -0.29
CCHCR1-228ENST00000509552 G3V4G9 280 aa13.24□□□□□ -0.29
CCHCR1-228ENST00000509552 TMEM170BQ5T4T1 132 aa13.24□□□□□ -0.29
CCHCR1-228ENST00000509552 RRN3P1Q2M238 152 aa13.24□□□□□ -0.29
CCHCR1-228ENST00000509552 KLHL30-AS1Q8NEE0 82 aa13.24□□□□□ -0.29
CCHCR1-228ENST00000509552 DOPEY2Q9Y3R5 2298 aa13.23□□□□□ -0.29
CCHCR1-228ENST00000509552 PRB1P04280 392 aa13.23□□□□□ -0.29
CCHCR1-228ENST00000509552 PLEKHB2Q96CS7 222 aa13.23□□□□□ -0.29
CCHCR1-228ENST00000509552 I3L3M4 83 aa13.23□□□□□ -0.29
CCHCR1-228ENST00000509552 SLURP1P55000 103 aa13.23□□□□□ -0.29
CCHCR1-228ENST00000509552 KNCNA6PVL3 124 aa13.22□□□□□ -0.29
CCHCR1-228ENST00000509552 DEFB131AP59861 70 aa13.22□□□□□ -0.29
CCHCR1-228ENST00000509552 F8W1H4 67 aa13.21□□□□□ -0.29
CCHCR1-228ENST00000509552 DEFB136Q30KP8 78 aa13.21□□□□□ -0.29
CCHCR1-228ENST00000509552 ZNRF2Q8NHG8 242 aa13.21□□□□□ -0.29
CCHCR1-228ENST00000509552 CSMD2Q7Z408 3487 aa13.21□□□□□ -0.3
CCHCR1-228ENST00000509552 HTN1P15515 57 aa13.21□□□□□ -0.3
CCHCR1-228ENST00000509552 RPL24P83731 157 aaKnown RBP13.21□□□□□ -0.3
CCHCR1-228ENST00000509552 PEMTQ9UBM1 199 aa13.21□□□□□ -0.3
CCHCR1-228ENST00000509552 C20orf203Q8NBC4 194 aa13.2□□□□□ -0.3
CCHCR1-228ENST00000509552 C18orf65Q6ZTR6 163 aa13.19□□□□□ -0.3
CCHCR1-228ENST00000509552 FAM208BQ5VWN6 2430 aa13.19□□□□□ -0.3
CCHCR1-228ENST00000509552 POLQO75417 2590 aa13.19□□□□□ -0.3
CCHCR1-228ENST00000509552 TRAV2A0A0B4J234 112 aa13.19□□□□□ -0.3
CCHCR1-228ENST00000509552 RBMY1A1P0DJD3 496 aaKnown RBP13.19□□□□□ -0.3
CCHCR1-228ENST00000509552 RBMY1CP0DJD4 496 aa13.19□□□□□ -0.3
CCHCR1-228ENST00000509552 P0DMU3 169 aa13.19□□□□□ -0.3
CCHCR1-228ENST00000509552 FAM231AP0DMU4 169 aa13.19□□□□□ -0.3
CCHCR1-228ENST00000509552 FAM231CP0DMU5 169 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms