RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 SLC25A29Q8N8R3 303 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 TMEM141Q96I45 108 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 TP53TG1Q9Y2A0 90 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 OVOL1O14753 267 aa10.05□□□□□ -0.8
USP40-214ENST00000483519 ADORA2A-AS1P86434 159 aa10.05□□□□□ -0.8
USP40-214ENST00000483519 RNF183Q96D59 192 aa10.05□□□□□ -0.8
USP40-214ENST00000483519 HIVEP3Q5T1R4 2406 aa10.05□□□□□ -0.8
USP40-214ENST00000483519 M0QXV9 152 aa10.05□□□□□ -0.8
USP40-214ENST00000483519 SPRY2O43597 315 aa10.05□□□□□ -0.8
USP40-214ENST00000483519 IGF1P05019 195 aa10.05□□□□□ -0.8
USP40-214ENST00000483519 ANXA2RQ3ZCQ2 193 aa10.05□□□□□ -0.8
USP40-214ENST00000483519 GPHB5Q86YW7 130 aa10.05□□□□□ -0.8
USP40-214ENST00000483519 TEX29Q8N6K0 151 aa10.04□□□□□ -0.8
USP40-214ENST00000483519 POM121L12Q8N7R1 296 aa10.04□□□□□ -0.8
USP40-214ENST00000483519 C20orf173Q96LM9 149 aa10.04□□□□□ -0.8
USP40-214ENST00000483519 IGIPA6NJ69 53 aa10.04□□□□□ -0.8
USP40-214ENST00000483519 LINC01548A6NM66 108 aa10.04□□□□□ -0.8
USP40-214ENST00000483519 TSHBP01222 138 aa10.04□□□□□ -0.8
USP40-214ENST00000483519 Q6ZS46 218 aa10.04□□□□□ -0.8
USP40-214ENST00000483519 ADGRG4Q8IZF6 3080 aa10.04□□□□□ -0.8
USP40-214ENST00000483519 WNK2Q9Y3S1 2297 aa10.04□□□□□ -0.8
USP40-214ENST00000483519 G3V318 75 aa10.03□□□□□ -0.8
USP40-214ENST00000483519 EMP1P54849 157 aa10.03□□□□□ -0.8
USP40-214ENST00000483519 TMEM170BQ5T4T1 132 aa10.03□□□□□ -0.8
USP40-214ENST00000483519 TIMM17AQ99595 171 aa10.03□□□□□ -0.8
USP40-214ENST00000483519 SLC25A20O43772 301 aa10.03□□□□□ -0.8
USP40-214ENST00000483519 KIR2DL4Q99706 377 aa10.03□□□□□ -0.8
USP40-214ENST00000483519 IGHV4OR15-8A0A075B7B6 117 aa10.02□□□□□ -0.81
USP40-214ENST00000483519 A0A087WW49 117 aa10.02□□□□□ -0.81
USP40-214ENST00000483519 LGALS3P17931 250 aaKnown RBP10.02□□□□□ -0.81
USP40-214ENST00000483519 TACC2O95359 2948 aa10.02□□□□□ -0.81
USP40-214ENST00000483519 TIRAPP58753 221 aa10.02□□□□□ -0.81
USP40-214ENST00000483519 TSPEAR-AS2P59090 65 aa10.02□□□□□ -0.81
USP40-214ENST00000483519 J3QQQ9 107 aa10.01□□□□□ -0.81
USP40-214ENST00000483519 VCYO14598 125 aa10.01□□□□□ -0.81
USP40-214ENST00000483519 NXPH4O95158 308 aa10.01□□□□□ -0.81
USP40-214ENST00000483519 RNASE3P12724 160 aaKnown RBP10.01□□□□□ -0.81
USP40-214ENST00000483519 RNASE4P34096 147 aaKnown RBP10.01□□□□□ -0.81
USP40-214ENST00000483519 BSNQ9UPA5 3926 aa10.01□□□□□ -0.81
USP40-214ENST00000483519 C9JAW5 83 aa10□□□□□ -0.81
USP40-214ENST00000483519 WIPF1O43516 503 aa10□□□□□ -0.81
USP40-214ENST00000483519 ZNF876PQ49A33 203 aa10□□□□□ -0.81
USP40-214ENST00000483519 FAM90A27PA6NNH2 459 aa10□□□□□ -0.81
USP40-214ENST00000483519 GNRH2O43555 120 aa10□□□□□ -0.81
USP40-214ENST00000483519 POLR2KP53803 58 aaKnown RBP10□□□□□ -0.81
USP40-214ENST00000483519 GAGE5Q13069 117 aa10□□□□□ -0.81
USP40-214ENST00000483519 GAGE6Q13070 117 aa10□□□□□ -0.81
USP40-214ENST00000483519 FAM19A4Q96LR4 140 aa10□□□□□ -0.81
USP40-214ENST00000483519 SIRPDQ9H106 197 aa10□□□□□ -0.81
USP40-214ENST00000483519 MYO18BQ8IUG5 2567 aa9.99□□□□□ -0.81
USP40-214ENST00000483519 TRBV7-9A0A0J9YWB2 115 aa9.99□□□□□ -0.81
USP40-214ENST00000483519 SRD5A1P18405 259 aa9.99□□□□□ -0.81
USP40-214ENST00000483519 APRG1Q8IVJ8 170 aa9.99□□□□□ -0.81
USP40-214ENST00000483519 AMELXQ99217 191 aa9.99□□□□□ -0.81
USP40-214ENST00000483519 A0A0B4J2C4 111 aa9.99□□□□□ -0.81
USP40-214ENST00000483519 FAM223BA6NKX1 122 aa9.99□□□□□ -0.81
USP40-214ENST00000483519 UBE2E1P51965 193 aa9.99□□□□□ -0.81
USP40-214ENST00000483519 RPL39P62891 51 aaKnown RBP9.99□□□□□ -0.81
USP40-214ENST00000483519 FAM223AQ8IWN6 122 aa9.99□□□□□ -0.81
USP40-214ENST00000483519 ZNRF2Q8NHG8 242 aa9.99□□□□□ -0.81
USP40-214ENST00000483519 KIF25-AS1Q9Y6Z4 181 aa9.99□□□□□ -0.81
USP40-214ENST00000483519 SOCS3O14543 225 aa9.98□□□□□ -0.81
USP40-214ENST00000483519 SNCGO76070 127 aa9.98□□□□□ -0.81
USP40-214ENST00000483519 IGHV3-33P01772 117 aa9.98□□□□□ -0.81
USP40-214ENST00000483519 P0DMU3 169 aa9.98□□□□□ -0.81
USP40-214ENST00000483519 FAM231AP0DMU4 169 aa9.98□□□□□ -0.81
USP40-214ENST00000483519 FAM231CP0DMU5 169 aa9.98□□□□□ -0.81
USP40-214ENST00000483519 LINC00315P59091 139 aa9.98□□□□□ -0.81
USP40-214ENST00000483519 RAX2Q96IS3 184 aa9.98□□□□□ -0.81
USP40-214ENST00000483519 ZFP36P26651 326 aaKnown RBP9.98□□□□□ -0.81
USP40-214ENST00000483519 SUMO4Q6EEV6 95 aa9.98□□□□□ -0.81
USP40-214ENST00000483519 DUX5Q96PT3 197 aa9.98□□□□□ -0.81
USP40-214ENST00000483519 GATA3P23771 443 aa9.98□□□□□ -0.81
USP40-214ENST00000483519 SDHAF1A6NFY7 115 aa9.97□□□□□ -0.81
USP40-214ENST00000483519 RHODO00212 210 aa9.97□□□□□ -0.81
USP40-214ENST00000483519 LEPROTO15243 131 aa9.97□□□□□ -0.81
USP40-214ENST00000483519 GRNP28799 593 aaKnown RBP9.97□□□□□ -0.81
USP40-214ENST00000483519 SAA4P35542 130 aa9.97□□□□□ -0.81
USP40-214ENST00000483519 GAGE2BQ13066 116 aa9.97□□□□□ -0.81
USP40-214ENST00000483519 GAGE2EQ4V326 116 aa9.97□□□□□ -0.81
USP40-214ENST00000483519 TMEM263Q8WUH6 116 aaKnown RBP9.97□□□□□ -0.81
USP40-214ENST00000483519 AJUBAQ96IF1 538 aa9.97□□□□□ -0.81
USP40-214ENST00000483519 GAGE2DQ9UEU5 116 aa9.97□□□□□ -0.81
USP40-214ENST00000483519 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.97□□□□□ -0.81
USP40-214ENST00000483519 ATXN8Q156A1 80 aa9.97□□□□□ -0.81
USP40-214ENST00000483519 TRBV27A0A0K0K1C4 114 aa9.96□□□□□ -0.81
USP40-214ENST00000483519 F5H697 171 aa9.96□□□□□ -0.81
USP40-214ENST00000483519 NDUFA4O00483 81 aa9.96□□□□□ -0.81
USP40-214ENST00000483519 TRPT1Q86TN4 253 aaKnown RBP9.96□□□□□ -0.81
USP40-214ENST00000483519 C5orf56Q8N8D9 126 aa9.96□□□□□ -0.81
USP40-214ENST00000483519 SPTBN1Q01082 2364 aaKnown RBP9.96□□□□□ -0.82
USP40-214ENST00000483519 TRAV41A0A0B4J266 112 aa9.96□□□□□ -0.82
USP40-214ENST00000483519 IGHV1-69P01742 117 aa9.96□□□□□ -0.82
USP40-214ENST00000483519 C11orf71Q6IPW1 123 aa9.96□□□□□ -0.82
USP40-214ENST00000483519 FAM159AQ6UWV7 190 aa9.96□□□□□ -0.82
USP40-214ENST00000483519 SS18L2Q9UHA2 77 aa9.96□□□□□ -0.82
USP40-214ENST00000483519 TRAV2A0A0B4J234 112 aa9.95□□□□□ -0.82
USP40-214ENST00000483519 CRIP2P52943 208 aaPredicted RBP9.95□□□□□ -0.82
USP40-214ENST00000483519 DEFB1P60022 68 aa9.95□□□□□ -0.82
USP40-214ENST00000483519 RPL11P62913 178 aaKnown RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms