RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 COL27A1Q8IZC6 1860 aaPredicted RBP10.41□□□□□ -0.74
HDAC1-206ENST00000476391 VCYO14598 125 aa10.41□□□□□ -0.74
HDAC1-206ENST00000476391 IGHV1-69P01742 117 aa10.41□□□□□ -0.74
HDAC1-206ENST00000476391 RPL39P62891 51 aaKnown RBP10.41□□□□□ -0.74
HDAC1-206ENST00000476391 NBR2O15453 112 aa10.4□□□□□ -0.74
HDAC1-206ENST00000476391 S100A4P26447 101 aaKnown RBP10.4□□□□□ -0.74
HDAC1-206ENST00000476391 LITAFQ99732 161 aa10.4□□□□□ -0.74
HDAC1-206ENST00000476391 PEMTQ9UBM1 199 aa10.4□□□□□ -0.74
HDAC1-206ENST00000476391 I3L3M4 83 aa10.39□□□□□ -0.75
HDAC1-206ENST00000476391 TRAV8-3A0A0A6YYJ7 113 aa10.39□□□□□ -0.75
HDAC1-206ENST00000476391 hADV29S1A0JD25 119 aa10.39□□□□□ -0.75
HDAC1-206ENST00000476391 EEF1AKMT3Q96AZ1 226 aa10.38□□□□□ -0.75
HDAC1-206ENST00000476391 PRSS2P07478 247 aa10.37□□□□□ -0.75
HDAC1-206ENST00000476391 TMEM105Q8N8V8 129 aa10.37□□□□□ -0.75
HDAC1-206ENST00000476391 NUP37Q8NFH4 326 aa10.37□□□□□ -0.75
HDAC1-206ENST00000476391 NPBQ8NG41 125 aa10.37□□□□□ -0.75
HDAC1-206ENST00000476391 KIR2DL5BQ8NHK3 375 aa10.37□□□□□ -0.75
HDAC1-206ENST00000476391 TIMM21Q9BVV7 248 aa10.37□□□□□ -0.75
HDAC1-206ENST00000476391 TRAV21A0A0B4J279 112 aa10.37□□□□□ -0.75
HDAC1-206ENST00000476391 IGHV3-23P01764 117 aa10.37□□□□□ -0.75
HDAC1-206ENST00000476391 TRAV41A0A0B4J266 112 aa10.36□□□□□ -0.75
HDAC1-206ENST00000476391 LY6LH3BQJ8 138 aa10.36□□□□□ -0.75
HDAC1-206ENST00000476391 SPRY2O43597 315 aa10.36□□□□□ -0.75
HDAC1-206ENST00000476391 PRR9Q5T870 116 aa10.36□□□□□ -0.75
HDAC1-206ENST00000476391 CCL17Q92583 94 aa10.36□□□□□ -0.75
HDAC1-206ENST00000476391 TMEM61Q8N0U2 210 aa10.36□□□□□ -0.75
HDAC1-206ENST00000476391 DYNLRB1Q9NP97 96 aa10.36□□□□□ -0.75
HDAC1-206ENST00000476391 IGHV3-64A0A075B6Q5 118 aa10.35□□□□□ -0.75
HDAC1-206ENST00000476391 TRBV27A0A0K0K1C4 114 aa10.35□□□□□ -0.75
HDAC1-206ENST00000476391 B9A039 149 aa10.35□□□□□ -0.75
HDAC1-206ENST00000476391 MIAQ16674 131 aa10.35□□□□□ -0.75
HDAC1-206ENST00000476391 KIF25-AS1Q9Y6Z4 181 aa10.35□□□□□ -0.75
HDAC1-206ENST00000476391 LINC00315P59091 139 aa10.35□□□□□ -0.75
HDAC1-206ENST00000476391 DAND5Q8N907 189 aa10.35□□□□□ -0.75
HDAC1-206ENST00000476391 IGHV3OR16-8A0A075B7F1 116 aa10.34□□□□□ -0.75
HDAC1-206ENST00000476391 TRBV7-1A0A0A6YYK4 115 aa10.34□□□□□ -0.75
HDAC1-206ENST00000476391 NXPH4O95158 308 aa10.34□□□□□ -0.75
HDAC1-206ENST00000476391 MBD3L4A6NDZ8 208 aaPredicted RBP10.34□□□□□ -0.75
HDAC1-206ENST00000476391 MBD3L3A6NE82 208 aaPredicted RBP10.34□□□□□ -0.75
HDAC1-206ENST00000476391 MBD3L5A6NJ08 208 aaPredicted RBP10.34□□□□□ -0.75
HDAC1-206ENST00000476391 IGHV3-30-3P0DP02 117 aa10.34□□□□□ -0.75
HDAC1-206ENST00000476391 UCNP55089 124 aa10.34□□□□□ -0.75
HDAC1-206ENST00000476391 C4orf26Q17RF5 130 aa10.34□□□□□ -0.75
HDAC1-206ENST00000476391 Q5XG85 94 aa10.34□□□□□ -0.75
HDAC1-206ENST00000476391 MBD3L2Q8NHZ7 208 aaPredicted RBP10.34□□□□□ -0.75
HDAC1-206ENST00000476391 DSPP15924 2871 aaKnown RBP10.33□□□□□ -0.76
HDAC1-206ENST00000476391 RPL18AQ02543 176 aaKnown RBP10.33□□□□□ -0.76
HDAC1-206ENST00000476391 RHOHQ15669 191 aa10.33□□□□□ -0.76
HDAC1-206ENST00000476391 TRBV6-5A0A0K0K1A5 114 aa10.33□□□□□ -0.76
HDAC1-206ENST00000476391 COX7A1P24310 79 aa10.33□□□□□ -0.76
HDAC1-206ENST00000476391 NSUN5P1Q3KNT7 163 aa10.33□□□□□ -0.76
HDAC1-206ENST00000476391 LINC00477Q96M19 166 aa10.33□□□□□ -0.76
HDAC1-206ENST00000476391 CYSTM1Q9H1C7 97 aa10.33□□□□□ -0.76
HDAC1-206ENST00000476391 PRB3Q04118 309 aaPredicted RBP10.32□□□□□ -0.76
HDAC1-206ENST00000476391 ADAMTSL4-AS1Q5T5F5 129 aa10.32□□□□□ -0.76
HDAC1-206ENST00000476391 SEM1Q6ZVN7 128 aa10.32□□□□□ -0.76
HDAC1-206ENST00000476391 ZFAND2AQ8N6M9 145 aa10.32□□□□□ -0.76
HDAC1-206ENST00000476391 DUX5Q96PT3 197 aa10.32□□□□□ -0.76
HDAC1-206ENST00000476391 ARHGAP32A7KAX9 2087 aa10.32□□□□□ -0.76
HDAC1-206ENST00000476391 IGHV3-35A0A0C4DH35 117 aa10.32□□□□□ -0.76
HDAC1-206ENST00000476391 OXTP01178 125 aa10.32□□□□□ -0.76
HDAC1-206ENST00000476391 RNASE3P12724 160 aaKnown RBP10.32□□□□□ -0.76
HDAC1-206ENST00000476391 SUMO4Q6EEV6 95 aa10.32□□□□□ -0.76
HDAC1-206ENST00000476391 SERP2Q8N6R1 65 aa10.32□□□□□ -0.76
HDAC1-206ENST00000476391 MAFAQ8NHW3 353 aaPredicted RBP10.32□□□□□ -0.76
HDAC1-206ENST00000476391 ZZEF1O43149 2961 aa10.31□□□□□ -0.76
HDAC1-206ENST00000476391 HRCT1Q6UXD1 115 aa10.31□□□□□ -0.76
HDAC1-206ENST00000476391 Q6ZSV7 163 aa10.31□□□□□ -0.76
HDAC1-206ENST00000476391 UPK3BQ9BT76 320 aa10.31□□□□□ -0.76
HDAC1-206ENST00000476391 SIT1Q9Y3P8 196 aa10.31□□□□□ -0.76
HDAC1-206ENST00000476391 PRRC2AP48634 2157 aaKnown RBP10.31□□□□□ -0.76
HDAC1-206ENST00000476391 CLPSL1A2RUU4 121 aa10.31□□□□□ -0.76
HDAC1-206ENST00000476391 PATE3B3GLJ2 98 aa10.31□□□□□ -0.76
HDAC1-206ENST00000476391 INAFM2P0DMQ5 153 aa10.31□□□□□ -0.76
HDAC1-206ENST00000476391 DAZ2Q13117 558 aaKnown RBP10.31□□□□□ -0.76
HDAC1-206ENST00000476391 DAZ4Q86SG3 579 aaKnown RBP10.31□□□□□ -0.76
HDAC1-206ENST00000476391 DAZ1Q9NQZ3 744 aaKnown RBP10.31□□□□□ -0.76
HDAC1-206ENST00000476391 DAZ3Q9NR90 486 aaKnown RBP10.31□□□□□ -0.76
HDAC1-206ENST00000476391 ZNF580Q9UK33 172 aa10.31□□□□□ -0.76
HDAC1-206ENST00000476391 A0A0J9YXV3 536 aa10.3□□□□□ -0.76
HDAC1-206ENST00000476391 COX7A2LO14548 114 aa10.3□□□□□ -0.76
HDAC1-206ENST00000476391 IGHV3-66A0A0C4DH42 116 aa10.29□□□□□ -0.76
HDAC1-206ENST00000476391 OPRPNQ99935 248 aaPredicted RBP10.29□□□□□ -0.76
HDAC1-206ENST00000476391 IGF1P05019 195 aa10.29□□□□□ -0.76
HDAC1-206ENST00000476391 NDPQ00604 133 aa10.29□□□□□ -0.76
HDAC1-206ENST00000476391 DEFB104AQ8WTQ1 72 aa10.29□□□□□ -0.76
HDAC1-206ENST00000476391 DSCR8Q96T75 97 aa10.29□□□□□ -0.76
HDAC1-206ENST00000476391 NDUFA12Q9UI09 145 aa10.29□□□□□ -0.76
HDAC1-206ENST00000476391 MUC3AQ02505 3323 aa10.29□□□□□ -0.76
HDAC1-206ENST00000476391 DCHS1Q96JQ0 3298 aa10.29□□□□□ -0.76
HDAC1-206ENST00000476391 TRAV13-1A0A0B4J241 112 aa10.28□□□□□ -0.76
HDAC1-206ENST00000476391 IGHV1-58A0A0C4DH39 117 aa10.28□□□□□ -0.76
HDAC1-206ENST00000476391 ADARB2-AS1A8MUL3 147 aa10.28□□□□□ -0.76
HDAC1-206ENST00000476391 TIMM17BO60830 172 aa10.28□□□□□ -0.76
HDAC1-206ENST00000476391 FAM222AQ5U5X8 452 aa10.28□□□□□ -0.76
HDAC1-206ENST00000476391 C9orf139Q6ZV77 190 aa10.28□□□□□ -0.76
HDAC1-206ENST00000476391 C16orf92Q96LL3 132 aa10.28□□□□□ -0.76
HDAC1-206ENST00000476391 FAM19A4Q96LR4 140 aa10.28□□□□□ -0.76
HDAC1-206ENST00000476391 MUC4Q99102 2169 aa10.28□□□□□ -0.76
HDAC1-206ENST00000476391 RNASE4P34096 147 aaKnown RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms