RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ACYP1P07311 99 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 SYNJ2BPP57105 145 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 LINC00205P59089 165 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 RBM3P98179 157 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 Q8N8P6 123 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 HIVEP1P15822 2718 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 HCFC1P51610 2035 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 HEATR5AQ86XA9 2040 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 SCN3AQ9NY46 2000 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 ZFHX3Q15911 3703 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 IGLV5-45A0A087WSX0 123 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 IGHV3-20A0A0C4DH32 117 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 MYMXA0A1B0GTQ4 84 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 SLC25A20O43772 301 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 NPYP01303 97 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 TMEM170BQ5T4T1 132 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 MORN5Q5VZ52 161 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 FAM104BQ5XKR9 115 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 ZGRF1Q86YA3 2104 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 NRACQ8N912 160 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 FDCSPQ8NFU4 85 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 NTN5Q8WTR8 489 aaPredicted RBP3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 FAM3DQ96BQ1 224 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 VSIG2Q96IQ7 327 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 FAM218AQ96MZ4 157 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 SLC50A1Q9BRV3 221 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 KRTAP4-7Q9BYR0 210 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 PDZD2O15018 2839 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 APCP25054 2843 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 NF1P21359 2839 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 DNHD1Q96M86 4753 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 H3BVH4 76 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 NXPH4O95158 308 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 CLPSP04118 112 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 C6orf99Q4VX62 202 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 LCE3BQ5TA77 95 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 SLC48A1Q6P1K1 146 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 LYPD5Q6UWN5 251 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 ZNF491Q8N8L2 437 aa3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 CHCHD1Q96BP2 118 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 OPRPNQ99935 248 aaPredicted RBP3.54□□□□□ -1.84
CCDC88A-209ENST00000456975 CSMD2Q7Z408 3487 aa3.53□□□□□ -1.84
CCDC88A-209ENST00000456975 EXPH5Q8NEV8 1989 aa3.53□□□□□ -1.84
CCDC88A-209ENST00000456975 TSHBP01222 138 aa3.53□□□□□ -1.84
CCDC88A-209ENST00000456975 IGKV3-11P04433 115 aa3.53□□□□□ -1.84
CCDC88A-209ENST00000456975 IFI6P09912 130 aa3.53□□□□□ -1.84
CCDC88A-209ENST00000456975 CIRBPQ14011 172 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-209ENST00000456975 ZNF876PQ49A33 203 aa3.53□□□□□ -1.84
CCDC88A-209ENST00000456975 DEFB121Q5J5C9 76 aa3.53□□□□□ -1.84
CCDC88A-209ENST00000456975 C16orf47Q6ZP98 133 aaPredicted RBP3.53□□□□□ -1.84
CCDC88A-209ENST00000456975 MPLKIPQ8TAP9 179 aa3.53□□□□□ -1.84
CCDC88A-209ENST00000456975 PHF3Q92576 2039 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-209ENST00000456975 ABCA2Q9BZC7 2435 aa3.53□□□□□ -1.85
CCDC88A-209ENST00000456975 IGHV3OR16-9A0A0B4J2B5 98 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 IGKV1-9A0A0C4DH69 117 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 BUB1B-PAK6H3BSN5 160 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 LTAP01374 205 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 TRBV12-3P01733 135 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 COX6B1P14854 86 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 AQP1P29972 269 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 MARCH3Q86UD3 253 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 GGNQ86UU5 652 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 NKAPP1Q8N9T2 125 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 PKDREJQ9NTG1 2253 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 IGHV4-39P01824 125 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 PRSS2P07478 247 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 RPL38P63173 70 aaKnown RBP3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 RPL18Q07020 188 aaKnown RBP3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 SDIM1Q6ZPB5 146 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 FOXL2NBQ6ZUU3 175 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 PDPNQ86YL7 162 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 GPHB5Q86YW7 130 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 DIRC1Q969H9 104 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 AKAP9Q99996 3911 aa3.52□□□□□ -1.85
CCDC88A-209ENST00000456975 CCDC168Q8NDH2 2452 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 A0A0J9YXV3 536 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 IBA57-AS1B1ANH7 110 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 H7BZZ5 65 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 IGKV1-5P01602 117 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 DYNLT3P51808 116 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 ATP5EP56381 51 aaPredicted RBP3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 S100A7L2Q5SY68 101 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 LINC00173Q6ZV60 143 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 FAM223AQ8IWN6 122 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 CACNA1CQ13936 2221 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 SPG11Q96JI7 2443 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 LOC107984156A0A0G2JMH3 177 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 TEX49A0A1B0GTD5 131 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 CRYM-AS1A6NIL9 109 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 J3QRE1 110 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 LMO4P61968 165 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 UBE2BP63146 152 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 RBMY1FQ15415 496 aaKnown RBP3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 MYO7BQ6PIF6 2116 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 ARL17AQ8IVW1 177 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 CPAMD8Q8IZJ3 1885 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 DOCK10Q96BY6 2186 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 ABHD14BQ96IU4 210 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 DEFB126Q9BYW3 111 aa3.51□□□□□ -1.85
CCDC88A-209ENST00000456975 LY96Q9Y6Y9 160 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms