RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 CYSLTR1Q9Y271 337 aa11.87□□□□□ -0.51
SHQ1-202ENST00000444040 USP9YO00507 2555 aaPredicted RBP11.87□□□□□ -0.51
SHQ1-202ENST00000444040 TAL2Q16559 108 aa11.87□□□□□ -0.51
SHQ1-202ENST00000444040 SPINK13Q1W4C9 94 aa11.87□□□□□ -0.51
SHQ1-202ENST00000444040 IGIPA6NJ69 53 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 HOXA3O43365 443 aaPredicted RBP11.86□□□□□ -0.51
SHQ1-202ENST00000444040 OCIAD2Q56VL3 154 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 BEX4Q9NWD9 120 aaPredicted RBP11.86□□□□□ -0.51
SHQ1-202ENST00000444040 IGHV1OR15-1A0A075B7D0 117 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 TRBV6-5A0A0K0K1A5 114 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 OR11H12B2RN74 326 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 F5H697 171 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 VCYO14598 125 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 KRTAP10-9P60411 292 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 AMTNQ6UX39 209 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 OR11H1Q8NG94 326 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 OR11H2Q8NH07 326 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 TP53TG1Q9Y2A0 90 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 ZANQ9Y493 2812 aa11.86□□□□□ -0.51
SHQ1-202ENST00000444040 SDHAF1A6NFY7 115 aa11.85□□□□□ -0.51
SHQ1-202ENST00000444040 K7ERJ3 54 aa11.85□□□□□ -0.51
SHQ1-202ENST00000444040 TRBV27A0A0K0K1C4 114 aa11.85□□□□□ -0.51
SHQ1-202ENST00000444040 E9PLD3 99 aa11.85□□□□□ -0.51
SHQ1-202ENST00000444040 ANKRD17O75179 2603 aaKnown RBP11.84□□□□□ -0.51
SHQ1-202ENST00000444040 MYMXA0A1B0GTQ4 84 aa11.84□□□□□ -0.51
SHQ1-202ENST00000444040 SAMD5Q5TGI4 173 aa11.84□□□□□ -0.51
SHQ1-202ENST00000444040 FAM74A4Q5TZK3 123 aa11.84□□□□□ -0.51
SHQ1-202ENST00000444040 MORN3Q6PF18 240 aaPredicted RBP11.84□□□□□ -0.51
SHQ1-202ENST00000444040 FOXI2Q6ZQN5 318 aa11.84□□□□□ -0.51
SHQ1-202ENST00000444040 DEFB104AQ8WTQ1 72 aa11.84□□□□□ -0.51
SHQ1-202ENST00000444040 KIR2DL4Q99706 377 aa11.84□□□□□ -0.51
SHQ1-202ENST00000444040 NHP2Q9NX24 153 aaKnown RBP11.84□□□□□ -0.51
SHQ1-202ENST00000444040 LINC01549A6NIU2 74 aa11.84□□□□□ -0.51
SHQ1-202ENST00000444040 SPCS1Q9Y6A9 102 aa11.84□□□□□ -0.51
SHQ1-202ENST00000444040 LINC01619G3V211 115 aa11.83□□□□□ -0.52
SHQ1-202ENST00000444040 M0QY20 66 aa11.83□□□□□ -0.52
SHQ1-202ENST00000444040 SYT8Q8NBV8 401 aa11.83□□□□□ -0.52
SHQ1-202ENST00000444040 POLQO75417 2590 aa11.83□□□□□ -0.52
SHQ1-202ENST00000444040 TRBV7-3A0A075B6L6 115 aa11.83□□□□□ -0.52
SHQ1-202ENST00000444040 RIPPLY3P57055 190 aa11.83□□□□□ -0.52
SHQ1-202ENST00000444040 RPL39P62891 51 aaKnown RBP11.83□□□□□ -0.52
SHQ1-202ENST00000444040 TCTEX1D4Q5JR98 221 aa11.83□□□□□ -0.52
SHQ1-202ENST00000444040 IGLV4-69A0A075B6H9 119 aa11.82□□□□□ -0.52
SHQ1-202ENST00000444040 C18orf65Q6ZTR6 163 aa11.82□□□□□ -0.52
SHQ1-202ENST00000444040 PRADC1Q9BSG0 188 aa11.82□□□□□ -0.52
SHQ1-202ENST00000444040 FABP2P12104 132 aa11.82□□□□□ -0.52
SHQ1-202ENST00000444040 TIMM17AQ99595 171 aa11.82□□□□□ -0.52
SHQ1-202ENST00000444040 AGRNO00468 2067 aa11.81□□□□□ -0.52
SHQ1-202ENST00000444040 CR1P17927 2039 aa11.81□□□□□ -0.52
SHQ1-202ENST00000444040 ZNF462Q96JM2 2506 aa11.81□□□□□ -0.52
SHQ1-202ENST00000444040 Q8N2B8 174 aa11.81□□□□□ -0.52
SHQ1-202ENST00000444040 OR5A1Q8NGJ0 315 aa11.81□□□□□ -0.52
SHQ1-202ENST00000444040 TMEM141Q96I45 108 aa11.81□□□□□ -0.52
SHQ1-202ENST00000444040 HIST1H4GQ99525 98 aa11.81□□□□□ -0.52
SHQ1-202ENST00000444040 DOPEY2Q9Y3R5 2298 aa11.81□□□□□ -0.52
SHQ1-202ENST00000444040 RBMY1A1P0DJD3 496 aaKnown RBP11.81□□□□□ -0.52
SHQ1-202ENST00000444040 RBMY1CP0DJD4 496 aa11.81□□□□□ -0.52
SHQ1-202ENST00000444040 SLURP1P55000 103 aa11.81□□□□□ -0.52
SHQ1-202ENST00000444040 PMVKQ15126 192 aa11.81□□□□□ -0.52
SHQ1-202ENST00000444040 RBMY1FQ15415 496 aaKnown RBP11.81□□□□□ -0.52
SHQ1-202ENST00000444040 ZNF56Q15929 161 aa11.81□□□□□ -0.52
SHQ1-202ENST00000444040 USP24Q9UPU5 2620 aa11.8□□□□□ -0.52
SHQ1-202ENST00000444040 C11orf86A6NJI1 115 aa11.8□□□□□ -0.52
SHQ1-202ENST00000444040 DEFB136Q30KP8 78 aa11.8□□□□□ -0.52
SHQ1-202ENST00000444040 DEFB113Q30KQ7 82 aa11.8□□□□□ -0.52
SHQ1-202ENST00000444040 ZNF843Q8N446 348 aa11.8□□□□□ -0.52
SHQ1-202ENST00000444040 ZNF256Q9Y2P7 627 aaPredicted RBP11.8□□□□□ -0.52
SHQ1-202ENST00000444040 MXRA5Q9NR99 2828 aa11.79□□□□□ -0.52
SHQ1-202ENST00000444040 C12orf74Q32Q52 190 aa11.79□□□□□ -0.52
SHQ1-202ENST00000444040 ZNF876PQ49A33 203 aa11.79□□□□□ -0.52
SHQ1-202ENST00000444040 Q5PR19 223 aa11.79□□□□□ -0.52
SHQ1-202ENST00000444040 FAM208BQ5VWN6 2430 aa11.79□□□□□ -0.52
SHQ1-202ENST00000444040 RNF151Q2KHN1 245 aa11.79□□□□□ -0.52
SHQ1-202ENST00000444040 UBR5O95071 2799 aaPredicted RBP11.79□□□□□ -0.52
SHQ1-202ENST00000444040 ZFYVE26Q68DK2 2539 aa11.78□□□□□ -0.52
SHQ1-202ENST00000444040 KNCNA6PVL3 124 aa11.78□□□□□ -0.52
SHQ1-202ENST00000444040 A8MTW9 85 aa11.78□□□□□ -0.52
SHQ1-202ENST00000444040 PAPPA-AS1Q5QFB9 102 aa11.78□□□□□ -0.52
SHQ1-202ENST00000444040 TRPT1Q86TN4 253 aaKnown RBP11.78□□□□□ -0.52
SHQ1-202ENST00000444040 TRGV11A0A075B6L2 103 aa11.78□□□□□ -0.52
SHQ1-202ENST00000444040 IGLL5B9A064 214 aa11.78□□□□□ -0.52
SHQ1-202ENST00000444040 EMP1P54849 157 aa11.78□□□□□ -0.52
SHQ1-202ENST00000444040 LRRC75A-AS1Q8N1F1 130 aa11.78□□□□□ -0.52
SHQ1-202ENST00000444040 NSUN5P1Q3KNT7 163 aa11.78□□□□□ -0.52
SHQ1-202ENST00000444040 CD300EQ496F6 205 aaPredicted RBP11.78□□□□□ -0.52
SHQ1-202ENST00000444040 A0A1B0GWB2 263 aa11.77□□□□□ -0.53
SHQ1-202ENST00000444040 ZNF815PA8K554 130 aa11.77□□□□□ -0.53
SHQ1-202ENST00000444040 DEFB131AP59861 70 aa11.77□□□□□ -0.53
SHQ1-202ENST00000444040 PRRC2AP48634 2157 aaKnown RBP11.77□□□□□ -0.53
SHQ1-202ENST00000444040 K7ERU9 68 aa11.77□□□□□ -0.53
SHQ1-202ENST00000444040 P0DMU3 169 aa11.77□□□□□ -0.53
SHQ1-202ENST00000444040 FAM231AP0DMU4 169 aa11.77□□□□□ -0.53
SHQ1-202ENST00000444040 FAM231CP0DMU5 169 aa11.77□□□□□ -0.53
SHQ1-202ENST00000444040 LRRK2Q5S007 2527 aa11.76□□□□□ -0.53
SHQ1-202ENST00000444040 SAP30O75446 220 aa11.76□□□□□ -0.53
SHQ1-202ENST00000444040 RHOHQ15669 191 aa11.76□□□□□ -0.53
SHQ1-202ENST00000444040 PLEKHB2Q96CS7 222 aa11.76□□□□□ -0.53
SHQ1-202ENST00000444040 H3BMM0 161 aa11.76□□□□□ -0.53
SHQ1-202ENST00000444040 KLHL30-AS1Q8NEE0 82 aa11.76□□□□□ -0.53
SHQ1-202ENST00000444040 ZNRF2Q8NHG8 242 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms