RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 IGLV10-54A0A075B6I4 117 aa9.89□□□□□ -0.83
PTCH1-207ENST00000429896 MED13LQ71F56 2210 aa9.89□□□□□ -0.83
PTCH1-207ENST00000429896 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.89□□□□□ -0.83
PTCH1-207ENST00000429896 IGKV2-29A2NJV5 120 aaPredicted RBP9.89□□□□□ -0.83
PTCH1-207ENST00000429896 PSMB8P28062 276 aa9.89□□□□□ -0.83
PTCH1-207ENST00000429896 DNAJC30Q96LL9 226 aa9.89□□□□□ -0.83
PTCH1-207ENST00000429896 ZNF492Q9P255 531 aa9.89□□□□□ -0.83
PTCH1-207ENST00000429896 IGLL1P15814 213 aa9.88□□□□□ -0.83
PTCH1-207ENST00000429896 PATE2Q6UY27 113 aa9.88□□□□□ -0.83
PTCH1-207ENST00000429896 GNRH2O43555 120 aa9.88□□□□□ -0.83
PTCH1-207ENST00000429896 IGHV3-30P01768 117 aa9.88□□□□□ -0.83
PTCH1-207ENST00000429896 IGHV3-33P01772 117 aa9.88□□□□□ -0.83
PTCH1-207ENST00000429896 IGHV3-30-3P0DP02 117 aa9.88□□□□□ -0.83
PTCH1-207ENST00000429896 IGHV3-30-5P0DP03 117 aa9.88□□□□□ -0.83
PTCH1-207ENST00000429896 TMEM61Q8N0U2 210 aa9.88□□□□□ -0.83
PTCH1-207ENST00000429896 DOPEY2Q9Y3R5 2298 aa9.88□□□□□ -0.83
PTCH1-207ENST00000429896 K7ERJ3 54 aa9.87□□□□□ -0.83
PTCH1-207ENST00000429896 C2orf66Q6UXQ4 117 aa9.87□□□□□ -0.83
PTCH1-207ENST00000429896 C11orf1Q9H5F2 150 aa9.87□□□□□ -0.83
PTCH1-207ENST00000429896 RANBP2P49792 3224 aaKnown RBP9.87□□□□□ -0.83
PTCH1-207ENST00000429896 RHODO00212 210 aa9.87□□□□□ -0.83
PTCH1-207ENST00000429896 DEFB4AO15263 64 aa9.87□□□□□ -0.83
PTCH1-207ENST00000429896 MRPL51Q4U2R6 128 aaKnown RBP9.87□□□□□ -0.83
PTCH1-207ENST00000429896 Q6ZS46 218 aa9.87□□□□□ -0.83
PTCH1-207ENST00000429896 AGPAT4-IT1Q9H0P7 198 aa9.87□□□□□ -0.83
PTCH1-207ENST00000429896 TEX48A0A1B0GUV7 120 aa9.86□□□□□ -0.83
PTCH1-207ENST00000429896 SDHAF1A6NFY7 115 aa9.86□□□□□ -0.83
PTCH1-207ENST00000429896 SOCS3O14543 225 aa9.86□□□□□ -0.83
PTCH1-207ENST00000429896 ZNF462Q96JM2 2506 aa9.86□□□□□ -0.83
PTCH1-207ENST00000429896 TIMM17AQ99595 171 aa9.86□□□□□ -0.83
PTCH1-207ENST00000429896 TRANK1O15050 2925 aa9.86□□□□□ -0.83
PTCH1-207ENST00000429896 RNF152Q8N8N0 203 aa9.86□□□□□ -0.83
PTCH1-207ENST00000429896 GFRA4Q9GZZ7 299 aa9.86□□□□□ -0.83
PTCH1-207ENST00000429896 LENEPQ9Y5L5 61 aa9.85□□□□□ -0.83
PTCH1-207ENST00000429896 PRR14LQ5THK1 2151 aa9.85□□□□□ -0.83
PTCH1-207ENST00000429896 Q0VG73 95 aa9.85□□□□□ -0.83
PTCH1-207ENST00000429896 PYGO2Q9BRQ0 406 aa9.85□□□□□ -0.83
PTCH1-207ENST00000429896 CHD3Q12873 2000 aaKnown RBP9.85□□□□□ -0.83
PTCH1-207ENST00000429896 PRRC2AP48634 2157 aaKnown RBP9.85□□□□□ -0.83
PTCH1-207ENST00000429896 DOCK11Q5JSL3 2073 aa9.85□□□□□ -0.83
PTCH1-207ENST00000429896 HIST2H2BDQ6DRA6 164 aa9.85□□□□□ -0.83
PTCH1-207ENST00000429896 ABCA1O95477 2261 aa9.85□□□□□ -0.83
PTCH1-207ENST00000429896 C16orf95Q9H693 158 aa9.85□□□□□ -0.83
PTCH1-207ENST00000429896 IGLV1-40P01703 118 aa9.85□□□□□ -0.83
PTCH1-207ENST00000429896 FAM231BA6NCW3 169 aa9.84□□□□□ -0.83
PTCH1-207ENST00000429896 DSCR8Q96T75 97 aa9.84□□□□□ -0.83
PTCH1-207ENST00000429896 C11orf52Q96A22 123 aa9.84□□□□□ -0.83
PTCH1-207ENST00000429896 FGF6P10767 208 aa9.84□□□□□ -0.83
PTCH1-207ENST00000429896 ZNF664Q8N3J9 261 aa9.84□□□□□ -0.83
PTCH1-207ENST00000429896 C16orf74Q96GX8 76 aa9.84□□□□□ -0.83
PTCH1-207ENST00000429896 MKI67P46013 3256 aaKnown RBP9.84□□□□□ -0.83
PTCH1-207ENST00000429896 DEFB114Q30KQ6 69 aa9.83□□□□□ -0.84
PTCH1-207ENST00000429896 DEFB125Q8N687 156 aa9.83□□□□□ -0.84
PTCH1-207ENST00000429896 U3KQE9 123 aa9.83□□□□□ -0.84
PTCH1-207ENST00000429896 PKD1L2Q7Z442 2459 aa9.83□□□□□ -0.84
PTCH1-207ENST00000429896 SMIM2Q9BVW6 85 aa9.83□□□□□ -0.84
PTCH1-207ENST00000429896 MAP6D1Q9H9H5 199 aa9.83□□□□□ -0.84
PTCH1-207ENST00000429896 LINC01549A6NIU2 74 aa9.83□□□□□ -0.84
PTCH1-207ENST00000429896 C9orf153Q5TBE3 101 aa9.83□□□□□ -0.84
PTCH1-207ENST00000429896 MRPL52Q86TS9 123 aaKnown RBP9.83□□□□□ -0.84
PTCH1-207ENST00000429896 ZC2HC1AQ96GY0 325 aa9.83□□□□□ -0.84
PTCH1-207ENST00000429896 K7EMI3 77 aa9.83□□□□□ -0.84
PTCH1-207ENST00000429896 OVOL2Q9BRP0 275 aa9.83□□□□□ -0.84
PTCH1-207ENST00000429896 IGKV1D-37A0A075B6S9 117 aa9.82□□□□□ -0.84
PTCH1-207ENST00000429896 LTAP01374 205 aa9.82□□□□□ -0.84
PTCH1-207ENST00000429896 C5orf38Q86SI9 138 aa9.82□□□□□ -0.84
PTCH1-207ENST00000429896 V9GYV3 84 aa9.82□□□□□ -0.84
PTCH1-207ENST00000429896 PRSS46E5RG02 174 aa9.82□□□□□ -0.84
PTCH1-207ENST00000429896 SLAQ13239 276 aa9.82□□□□□ -0.84
PTCH1-207ENST00000429896 NDUFA12Q9UI09 145 aa9.82□□□□□ -0.84
PTCH1-207ENST00000429896 C18orf65Q6ZTR6 163 aa9.81□□□□□ -0.84
PTCH1-207ENST00000429896 SPART-AS1P0CW21 52 aa9.81□□□□□ -0.84
PTCH1-207ENST00000429896 DEFB135Q30KP9 77 aa9.81□□□□□ -0.84
PTCH1-207ENST00000429896 IGHV1-24A0A0C4DH33 117 aa9.81□□□□□ -0.84
PTCH1-207ENST00000429896 EGR2P11161 476 aaPredicted RBP9.81□□□□□ -0.84
PTCH1-207ENST00000429896 C5orf47Q569G3 176 aa9.81□□□□□ -0.84
PTCH1-207ENST00000429896 Q8N8P6 123 aa9.81□□□□□ -0.84
PTCH1-207ENST00000429896 CT83Q5H943 113 aa9.81□□□□□ -0.84
PTCH1-207ENST00000429896 FAM104BQ5XKR9 115 aa9.8□□□□□ -0.84
PTCH1-207ENST00000429896 NPYP01303 97 aa9.8□□□□□ -0.84
PTCH1-207ENST00000429896 ZNF493Q6ZR52 646 aa9.8□□□□□ -0.84
PTCH1-207ENST00000429896 SMIM27A0A1W2PRY6 76 aa9.8□□□□□ -0.84
PTCH1-207ENST00000429896 MAJINQ3KP22 176 aa9.8□□□□□ -0.84
PTCH1-207ENST00000429896 F8W735 103 aaPredicted RBP9.8□□□□□ -0.84
PTCH1-207ENST00000429896 FAM231DQ6ZW35 169 aa9.8□□□□□ -0.84
PTCH1-207ENST00000429896 TMEM141Q96I45 108 aa9.8□□□□□ -0.84
PTCH1-207ENST00000429896 A8MWP6 167 aa9.79□□□□□ -0.84
PTCH1-207ENST00000429896 C18orf32Q8TCD1 76 aa9.79□□□□□ -0.84
PTCH1-207ENST00000429896 DLEU1O43261 78 aa9.79□□□□□ -0.84
PTCH1-207ENST00000429896 FAM167A-AS1Q96KT0 104 aa9.79□□□□□ -0.84
PTCH1-207ENST00000429896 MRPL35Q9NZE8 188 aaKnown RBP9.79□□□□□ -0.84
PTCH1-207ENST00000429896 SHANK1Q9Y566 2161 aa9.79□□□□□ -0.84
PTCH1-207ENST00000429896 RAI1Q7Z5J4 1906 aaPredicted RBP9.79□□□□□ -0.84
PTCH1-207ENST00000429896 SIGLEC8Q9NYZ4 499 aa9.79□□□□□ -0.84
PTCH1-207ENST00000429896 DKK2Q9UBU2 259 aa9.79□□□□□ -0.84
PTCH1-207ENST00000429896 GATA1P15976 413 aaPredicted RBP9.78□□□□□ -0.84
PTCH1-207ENST00000429896 ZNF124Q15973 351 aa9.78□□□□□ -0.84
PTCH1-207ENST00000429896 NCR3O14931 201 aa9.78□□□□□ -0.84
PTCH1-207ENST00000429896 RMI2Q96E14 147 aa9.78□□□□□ -0.84
PTCH1-207ENST00000429896 C9orf47Q6ZRZ4 202 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms