RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 C20orf78Q9BR46 151 aa12.3□□□□□ -0.44
PCDH1-203ENST00000394536 MTORP42345 2549 aa12.3□□□□□ -0.44
PCDH1-203ENST00000394536 CD28P10747 220 aa12.3□□□□□ -0.44
PCDH1-203ENST00000394536 IGHG4P01861 327 aa12.29□□□□□ -0.44
PCDH1-203ENST00000394536 RNASE13Q5GAN3 156 aaKnown RBP12.29□□□□□ -0.44
PCDH1-203ENST00000394536 C11orf44Q8N8P7 122 aa12.29□□□□□ -0.44
PCDH1-203ENST00000394536 CLUHP3Q96NS8 147 aa12.29□□□□□ -0.44
PCDH1-203ENST00000394536 AJUBAQ96IF1 538 aa12.29□□□□□ -0.44
PCDH1-203ENST00000394536 FBXL19-AS1Q494R0 122 aa12.29□□□□□ -0.44
PCDH1-203ENST00000394536 ITLN2Q8WWU7 325 aaPredicted RBP12.28□□□□□ -0.44
PCDH1-203ENST00000394536 BAALCQ8WXS3 180 aa12.28□□□□□ -0.44
PCDH1-203ENST00000394536 RASL10AQ92737 203 aa12.28□□□□□ -0.44
PCDH1-203ENST00000394536 FN1P02751 2386 aaKnown RBP12.28□□□□□ -0.44
PCDH1-203ENST00000394536 IGHV7-4-1A0A0J9YVY3 117 aa12.28□□□□□ -0.44
PCDH1-203ENST00000394536 LMO4P61968 165 aa12.28□□□□□ -0.44
PCDH1-203ENST00000394536 ERG28Q9UKR5 140 aa12.28□□□□□ -0.44
PCDH1-203ENST00000394536 IGKV3OR2-268A0A0C4DH90 116 aa12.27□□□□□ -0.44
PCDH1-203ENST00000394536 COX6CP09669 75 aa12.27□□□□□ -0.45
PCDH1-203ENST00000394536 TAL2Q16559 108 aa12.27□□□□□ -0.45
PCDH1-203ENST00000394536 Q8N6K4 173 aa12.27□□□□□ -0.45
PCDH1-203ENST00000394536 PTH2Q96A98 100 aa12.27□□□□□ -0.45
PCDH1-203ENST00000394536 MRPL53Q96EL3 112 aaKnown RBP12.27□□□□□ -0.45
PCDH1-203ENST00000394536 OPRPNQ99935 248 aaPredicted RBP12.27□□□□□ -0.45
PCDH1-203ENST00000394536 C9JAW5 83 aa12.27□□□□□ -0.45
PCDH1-203ENST00000394536 CLPSL1A2RUU4 121 aa12.26□□□□□ -0.45
PCDH1-203ENST00000394536 C11orf86A6NJI1 115 aa12.26□□□□□ -0.45
PCDH1-203ENST00000394536 EBI3Q14213 229 aa12.26□□□□□ -0.45
PCDH1-203ENST00000394536 NRACQ8N912 160 aa12.26□□□□□ -0.45
PCDH1-203ENST00000394536 LINC01587Q99440 93 aa12.26□□□□□ -0.45
PCDH1-203ENST00000394536 JMJD1CQ15652 2540 aa12.26□□□□□ -0.45
PCDH1-203ENST00000394536 LGALS1P09382 135 aaKnown RBP12.26□□□□□ -0.45
PCDH1-203ENST00000394536 PHLDA1Q8WV24 401 aaPredicted RBP12.26□□□□□ -0.45
PCDH1-203ENST00000394536 A0A1W2PPR1 153 aa12.25□□□□□ -0.45
PCDH1-203ENST00000394536 LENEPQ9Y5L5 61 aa12.25□□□□□ -0.45
PCDH1-203ENST00000394536 SPINK8P0C7L1 97 aa12.25□□□□□ -0.45
PCDH1-203ENST00000394536 SUMO4Q6EEV6 95 aa12.25□□□□□ -0.45
PCDH1-203ENST00000394536 J3QQQ9 107 aa12.25□□□□□ -0.45
PCDH1-203ENST00000394536 CKS1BP61024 79 aa12.24□□□□□ -0.45
PCDH1-203ENST00000394536 RPL13AP40429 203 aaKnown RBP12.24□□□□□ -0.45
PCDH1-203ENST00000394536 UFSP1Q6NVU6 142 aa12.24□□□□□ -0.45
PCDH1-203ENST00000394536 ZFP2Q6ZN57 461 aa12.24□□□□□ -0.45
PCDH1-203ENST00000394536 TOMM6Q96B49 74 aa12.24□□□□□ -0.45
PCDH1-203ENST00000394536 PLEKHB2Q96CS7 222 aa12.24□□□□□ -0.45
PCDH1-203ENST00000394536 TM2D2Q9BX73 214 aa12.24□□□□□ -0.45
PCDH1-203ENST00000394536 MSMBP08118 114 aa12.24□□□□□ -0.45
PCDH1-203ENST00000394536 ZFAND2AQ8N6M9 145 aa12.24□□□□□ -0.45
PCDH1-203ENST00000394536 PKD1L2Q7Z442 2459 aa12.24□□□□□ -0.45
PCDH1-203ENST00000394536 DEFB131AP59861 70 aa12.23□□□□□ -0.45
PCDH1-203ENST00000394536 SRSF2Q01130 221 aaKnown RBP12.23□□□□□ -0.45
PCDH1-203ENST00000394536 C11orf71Q6IPW1 123 aa12.23□□□□□ -0.45
PCDH1-203ENST00000394536 IGHV3-16A0A0C4DH30 117 aa12.23□□□□□ -0.45
PCDH1-203ENST00000394536 NRGNQ92686 78 aa12.23□□□□□ -0.45
PCDH1-203ENST00000394536 ZNF625Q96I27 306 aaPredicted RBP12.23□□□□□ -0.45
PCDH1-203ENST00000394536 SPAG8Q99932 426 aaPredicted RBP12.23□□□□□ -0.45
PCDH1-203ENST00000394536 MDFICQ9P1T7 246 aa12.23□□□□□ -0.45
PCDH1-203ENST00000394536 E9PLD3 99 aa12.22□□□□□ -0.45
PCDH1-203ENST00000394536 IGHV4-59P01825 116 aa12.22□□□□□ -0.45
PCDH1-203ENST00000394536 CNFNQ9BYD5 112 aa12.22□□□□□ -0.45
PCDH1-203ENST00000394536 IGHV3-38A0A0C4DH36 116 aa12.22□□□□□ -0.45
PCDH1-203ENST00000394536 A0A1W2PRX2 142 aa12.21□□□□□ -0.45
PCDH1-203ENST00000394536 B4DSR2 109 aa12.21□□□□□ -0.45
PCDH1-203ENST00000394536 IGHV1OR15-1A0A075B7D0 117 aa12.21□□□□□ -0.45
PCDH1-203ENST00000394536 MEIG1Q5JSS6 88 aa12.21□□□□□ -0.45
PCDH1-203ENST00000394536 PRO1854Q9UHT4 67 aa12.21□□□□□ -0.45
PCDH1-203ENST00000394536 IGHV4-30-2A0A087WSY4 118 aa12.21□□□□□ -0.46
PCDH1-203ENST00000394536 A0A0J9YXV3 536 aa12.21□□□□□ -0.46
PCDH1-203ENST00000394536 TRAV12-1A0A0B4J245 112 aa12.2□□□□□ -0.46
PCDH1-203ENST00000394536 C19orf84I3L1E1 186 aa12.2□□□□□ -0.46
PCDH1-203ENST00000394536 Q6ZS46 218 aa12.2□□□□□ -0.46
PCDH1-203ENST00000394536 Q8N1Y9 231 aa12.19□□□□□ -0.46
PCDH1-203ENST00000394536 SNCGO76070 127 aa12.19□□□□□ -0.46
PCDH1-203ENST00000394536 INSL3P51460 131 aa12.19□□□□□ -0.46
PCDH1-203ENST00000394536 TRPT1Q86TN4 253 aaKnown RBP12.19□□□□□ -0.46
PCDH1-203ENST00000394536 NEXN-AS1Q8NBZ9 246 aa12.19□□□□□ -0.46
PCDH1-203ENST00000394536 TTC32Q5I0X7 151 aa12.19□□□□□ -0.46
PCDH1-203ENST00000394536 TMEM141Q96I45 108 aa12.19□□□□□ -0.46
PCDH1-203ENST00000394536 TIMM21Q9BVV7 248 aa12.19□□□□□ -0.46
PCDH1-203ENST00000394536 IGHV3-53P01767 116 aa12.18□□□□□ -0.46
PCDH1-203ENST00000394536 TRGV11A0A075B6L2 103 aa12.18□□□□□ -0.46
PCDH1-203ENST00000394536 DEFB136Q30KP8 78 aa12.18□□□□□ -0.46
PCDH1-203ENST00000394536 UBE2E2Q96LR5 201 aa12.18□□□□□ -0.46
PCDH1-203ENST00000394536 A4D1N5 150 aa12.18□□□□□ -0.46
PCDH1-203ENST00000394536 CIRBPQ14011 172 aaKnown RBP12.17□□□□□ -0.46
PCDH1-203ENST00000394536 PRRC2AP48634 2157 aaKnown RBP12.17□□□□□ -0.46
PCDH1-203ENST00000394536 EDN2P20800 178 aa12.17□□□□□ -0.46
PCDH1-203ENST00000394536 C10orf99Q6UWK7 81 aa12.17□□□□□ -0.46
PCDH1-203ENST00000394536 SPANXB1Q9NS25 103 aaPredicted RBP12.17□□□□□ -0.46
PCDH1-203ENST00000394536 I3L3M4 83 aa12.16□□□□□ -0.46
PCDH1-203ENST00000394536 DEFB112Q30KQ8 113 aa12.16□□□□□ -0.46
PCDH1-203ENST00000394536 TCTEX1D4Q5JR98 221 aa12.16□□□□□ -0.46
PCDH1-203ENST00000394536 TEX29Q8N6K0 151 aa12.16□□□□□ -0.46
PCDH1-203ENST00000394536 RNASE3P12724 160 aaKnown RBP12.16□□□□□ -0.46
PCDH1-203ENST00000394536 TOMM7Q9P0U1 55 aa12.16□□□□□ -0.46
PCDH1-203ENST00000394536 CEMP1Q6PRD7 247 aaPredicted RBP12.15□□□□□ -0.46
PCDH1-203ENST00000394536 COX8CQ7Z4L0 72 aa12.15□□□□□ -0.46
PCDH1-203ENST00000394536 IGHG2P01859 326 aa12.15□□□□□ -0.46
PCDH1-203ENST00000394536 PPDPFLQ8WWR9 84 aa12.15□□□□□ -0.46
PCDH1-203ENST00000394536 ACANP16112 2415 aa12.15□□□□□ -0.46
PCDH1-203ENST00000394536 IGLV2-18A0A075B6J9 118 aa12.15□□□□□ -0.46
PCDH1-203ENST00000394536 ANAPC13Q9BS18 74 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms