RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 INSL3P51460 131 aa12.21□□□□□ -0.45
NKX3-1-201ENST00000380871 CUBNO60494 3623 aa12.21□□□□□ -0.45
NKX3-1-201ENST00000380871 FBN2P35556 2912 aa12.21□□□□□ -0.45
NKX3-1-201ENST00000380871 LINC00477Q96M19 166 aa12.21□□□□□ -0.45
NKX3-1-201ENST00000380871 NOTCH3Q9UM47 2321 aa12.21□□□□□ -0.46
NKX3-1-201ENST00000380871 RRN3P1Q2M238 152 aa12.21□□□□□ -0.46
NKX3-1-201ENST00000380871 TSSC4Q9Y5U2 329 aaPredicted RBP12.21□□□□□ -0.46
NKX3-1-201ENST00000380871 BEX4Q9NWD9 120 aaPredicted RBP12.2□□□□□ -0.46
NKX3-1-201ENST00000380871 SLC25A16P16260 332 aa12.2□□□□□ -0.46
NKX3-1-201ENST00000380871 CD300EQ496F6 205 aaPredicted RBP12.2□□□□□ -0.46
NKX3-1-201ENST00000380871 MORN3Q6PF18 240 aaPredicted RBP12.2□□□□□ -0.46
NKX3-1-201ENST00000380871 ZNF815PA8K554 130 aa12.19□□□□□ -0.46
NKX3-1-201ENST00000380871 TAL2Q16559 108 aa12.19□□□□□ -0.46
NKX3-1-201ENST00000380871 C20orf78Q9BR46 151 aa12.19□□□□□ -0.46
NKX3-1-201ENST00000380871 LENEPQ9Y5L5 61 aa12.19□□□□□ -0.46
NKX3-1-201ENST00000380871 A0A087WWL8 130 aa12.19□□□□□ -0.46
NKX3-1-201ENST00000380871 CRYGDP07320 174 aa12.19□□□□□ -0.46
NKX3-1-201ENST00000380871 RPL39P62891 51 aaKnown RBP12.19□□□□□ -0.46
NKX3-1-201ENST00000380871 SCGB2A2Q13296 93 aa12.19□□□□□ -0.46
NKX3-1-201ENST00000380871 TSHBP01222 138 aa12.18□□□□□ -0.46
NKX3-1-201ENST00000380871 SMAGPQ0VAQ4 97 aa12.18□□□□□ -0.46
NKX3-1-201ENST00000380871 NDUFA4O00483 81 aa12.18□□□□□ -0.46
NKX3-1-201ENST00000380871 HIST2H2BCQ6DN03 193 aa12.18□□□□□ -0.46
NKX3-1-201ENST00000380871 PGPEP1Q9NXJ5 209 aa12.18□□□□□ -0.46
NKX3-1-201ENST00000380871 OVOL1O14753 267 aa12.17□□□□□ -0.46
NKX3-1-201ENST00000380871 AZU1P20160 251 aa12.17□□□□□ -0.46
NKX3-1-201ENST00000380871 SCGB1D4Q6XE38 83 aa12.17□□□□□ -0.46
NKX3-1-201ENST00000380871 SPAG8Q99932 426 aaPredicted RBP12.17□□□□□ -0.46
NKX3-1-201ENST00000380871 F8W1H4 67 aa12.17□□□□□ -0.46
NKX3-1-201ENST00000380871 LINC01356Q8N9X3 169 aa12.17□□□□□ -0.46
NKX3-1-201ENST00000380871 FAM19A4Q96LR4 140 aa12.17□□□□□ -0.46
NKX3-1-201ENST00000380871 TEX15Q9BXT5 2789 aa12.17□□□□□ -0.46
NKX3-1-201ENST00000380871 C11orf86A6NJI1 115 aa12.17□□□□□ -0.46
NKX3-1-201ENST00000380871 USMG5Q96IX5 58 aa12.17□□□□□ -0.46
NKX3-1-201ENST00000380871 PRO0461Q9UI25 63 aa12.17□□□□□ -0.46
NKX3-1-201ENST00000380871 TP53TG1Q9Y2A0 90 aa12.17□□□□□ -0.46
NKX3-1-201ENST00000380871 WNK1Q9H4A3 2382 aa12.16□□□□□ -0.46
NKX3-1-201ENST00000380871 LINC00315P59091 139 aa12.16□□□□□ -0.46
NKX3-1-201ENST00000380871 ZNF688P0C7X2 276 aa12.16□□□□□ -0.46
NKX3-1-201ENST00000380871 GAGE13Q4V321 117 aa12.16□□□□□ -0.46
NKX3-1-201ENST00000380871 SAMD13Q5VXD3 122 aa12.16□□□□□ -0.46
NKX3-1-201ENST00000380871 KHDC1LQ5JSQ8 128 aa12.15□□□□□ -0.46
NKX3-1-201ENST00000380871 A0A1B0GWB2 263 aa12.15□□□□□ -0.46
NKX3-1-201ENST00000380871 MRPL16Q9NX20 251 aaKnown RBP12.15□□□□□ -0.46
NKX3-1-201ENST00000380871 IGLV4-69A0A075B6H9 119 aa12.15□□□□□ -0.46
NKX3-1-201ENST00000380871 LINC01549A6NIU2 74 aa12.15□□□□□ -0.46
NKX3-1-201ENST00000380871 KIF25-AS1Q9Y6Z4 181 aa12.15□□□□□ -0.46
NKX3-1-201ENST00000380871 HOXA3O43365 443 aaPredicted RBP12.14□□□□□ -0.47
NKX3-1-201ENST00000380871 ACANP16112 2415 aa12.14□□□□□ -0.47
NKX3-1-201ENST00000380871 SYNJ2BPP57105 145 aa12.14□□□□□ -0.47
NKX3-1-201ENST00000380871 SRSF9Q13242 221 aaKnown RBP eCLIP12.14□□□□□ -0.47
NKX3-1-201ENST00000380871 ZNF843Q8N446 348 aa12.14□□□□□ -0.47
NKX3-1-201ENST00000380871 DAZ1Q9NQZ3 744 aaKnown RBP12.14□□□□□ -0.47
NKX3-1-201ENST00000380871 TRAV12-3A0A0B4J271 114 aa12.13□□□□□ -0.47
NKX3-1-201ENST00000380871 GAGE12HA6NDE8 117 aa12.13□□□□□ -0.47
NKX3-1-201ENST00000380871 TSPEAR-AS2P59090 65 aa12.13□□□□□ -0.47
NKX3-1-201ENST00000380871 FAM74A4Q5TZK3 123 aa12.13□□□□□ -0.47
NKX3-1-201ENST00000380871 SUMO4Q6EEV6 95 aa12.13□□□□□ -0.47
NKX3-1-201ENST00000380871 F5H697 171 aa12.13□□□□□ -0.47
NKX3-1-201ENST00000380871 APOMO95445 188 aa12.13□□□□□ -0.47
NKX3-1-201ENST00000380871 ZFP2Q6ZN57 461 aa12.13□□□□□ -0.47
NKX3-1-201ENST00000380871 DUX3Q96PT4 197 aa12.13□□□□□ -0.47
NKX3-1-201ENST00000380871 DEFB136Q30KP8 78 aa12.12□□□□□ -0.47
NKX3-1-201ENST00000380871 CD7P09564 240 aa12.12□□□□□ -0.47
NKX3-1-201ENST00000380871 CRIP2P52943 208 aaPredicted RBP12.12□□□□□ -0.47
NKX3-1-201ENST00000380871 TRAV12-2A0A075B6T6 113 aa12.12□□□□□ -0.47
NKX3-1-201ENST00000380871 LOC107984156A0A0G2JMH3 177 aa12.12□□□□□ -0.47
NKX3-1-201ENST00000380871 ARL17AQ8IVW1 177 aa12.12□□□□□ -0.47
NKX3-1-201ENST00000380871 OPRPNQ99935 248 aaPredicted RBP12.12□□□□□ -0.47
NKX3-1-201ENST00000380871 IGIPA6NJ69 53 aa12.11□□□□□ -0.47
NKX3-1-201ENST00000380871 HTN1P15515 57 aa12.11□□□□□ -0.47
NKX3-1-201ENST00000380871 MXRA5Q9NR99 2828 aa12.11□□□□□ -0.47
NKX3-1-201ENST00000380871 TSPAN13O95857 204 aa12.11□□□□□ -0.47
NKX3-1-201ENST00000380871 IGLV1-40P01703 118 aa12.11□□□□□ -0.47
NKX3-1-201ENST00000380871 SMCPP49901 116 aaPredicted RBP12.11□□□□□ -0.47
NKX3-1-201ENST00000380871 APRG1Q8IVJ8 170 aa12.11□□□□□ -0.47
NKX3-1-201ENST00000380871 SIGMAR1Q99720 223 aa12.11□□□□□ -0.47
NKX3-1-201ENST00000380871 LINC01619G3V211 115 aa12.1□□□□□ -0.47
NKX3-1-201ENST00000380871 Q5PR19 223 aa12.1□□□□□ -0.47
NKX3-1-201ENST00000380871 FAM159AQ6UWV7 190 aa12.1□□□□□ -0.47
NKX3-1-201ENST00000380871 ZNF256Q9Y2P7 627 aaPredicted RBP12.1□□□□□ -0.47
NKX3-1-201ENST00000380871 DSCR9P59020 149 aa12.1□□□□□ -0.47
NKX3-1-201ENST00000380871 C11orf44Q8N8P7 122 aa12.1□□□□□ -0.47
NKX3-1-201ENST00000380871 ZNRF2Q8NHG8 242 aa12.1□□□□□ -0.47
NKX3-1-201ENST00000380871 TMEM170BQ5T4T1 132 aa12.1□□□□□ -0.47
NKX3-1-201ENST00000380871 PTH2Q96A98 100 aa12.1□□□□□ -0.47
NKX3-1-201ENST00000380871 Q96MF0 132 aa12.1□□□□□ -0.47
NKX3-1-201ENST00000380871 SDHAF1A6NFY7 115 aa12.09□□□□□ -0.47
NKX3-1-201ENST00000380871 KLLNB2CW77 178 aa12.09□□□□□ -0.47
NKX3-1-201ENST00000380871 PSMB2P49721 201 aa12.09□□□□□ -0.47
NKX3-1-201ENST00000380871 POLR2KP53803 58 aaKnown RBP12.09□□□□□ -0.47
NKX3-1-201ENST00000380871 ATP6V0BQ99437 205 aa12.09□□□□□ -0.47
NKX3-1-201ENST00000380871 NXPH4O95158 308 aa12.09□□□□□ -0.47
NKX3-1-201ENST00000380871 MED14OSP0DP75 135 aa12.09□□□□□ -0.47
NKX3-1-201ENST00000380871 UBE2D1P51668 147 aa12.09□□□□□ -0.47
NKX3-1-201ENST00000380871 C18orf65Q6ZTR6 163 aa12.09□□□□□ -0.47
NKX3-1-201ENST00000380871 ZNF418Q8TF45 676 aaPredicted RBP12.09□□□□□ -0.47
NKX3-1-201ENST00000380871 MDFICQ9P1T7 246 aa12.09□□□□□ -0.47
NKX3-1-201ENST00000380871 MTORP42345 2549 aa12.09□□□□□ -0.47
NKX3-1-201ENST00000380871 A0A0J9YY99 117 aa12.08□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms