RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 RASL10AQ92737 203 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 MAP1LC3AQ9H492 121 aa10.03□□□□□ -0.8
PTPRF-202ENST00000372405 NACAE9PAV3 2078 aa10.02□□□□□ -0.81
PTPRF-202ENST00000372405 IGLV2-18A0A075B6J9 118 aa10.02□□□□□ -0.81
PTPRF-202ENST00000372405 MGPP08493 103 aa10.02□□□□□ -0.81
PTPRF-202ENST00000372405 KRTDAPP60985 99 aa10.02□□□□□ -0.81
PTPRF-202ENST00000372405 DEFB125Q8N687 156 aa10.02□□□□□ -0.81
PTPRF-202ENST00000372405 STAB1Q9NY15 2570 aa10.02□□□□□ -0.81
PTPRF-202ENST00000372405 LINC01546A6NGU7 62 aa10.01□□□□□ -0.81
PTPRF-202ENST00000372405 CRYGDP07320 174 aa10.01□□□□□ -0.81
PTPRF-202ENST00000372405 RPL35AP18077 110 aaKnown RBP10.01□□□□□ -0.81
PTPRF-202ENST00000372405 AZU1P20160 251 aa10.01□□□□□ -0.81
PTPRF-202ENST00000372405 NUTF2P61970 127 aaKnown RBP10.01□□□□□ -0.81
PTPRF-202ENST00000372405 ZNF876PQ49A33 203 aa10.01□□□□□ -0.81
PTPRF-202ENST00000372405 RPL39LQ96EH5 51 aaKnown RBP10.01□□□□□ -0.81
PTPRF-202ENST00000372405 PRSS47A8MTI9 375 aa10.01□□□□□ -0.81
PTPRF-202ENST00000372405 SCGB1D1O95968 90 aa10.01□□□□□ -0.81
PTPRF-202ENST00000372405 SYT8Q8NBV8 401 aa10.01□□□□□ -0.81
PTPRF-202ENST00000372405 WFDC9Q8NEX5 89 aa10.01□□□□□ -0.81
PTPRF-202ENST00000372405 IGHV3OR16-12A0A075B7B8 117 aa9.99□□□□□ -0.81
PTPRF-202ENST00000372405 ZNF415Q09FC8 603 aa9.99□□□□□ -0.81
PTPRF-202ENST00000372405 SPATA12Q7Z6I5 190 aa9.99□□□□□ -0.81
PTPRF-202ENST00000372405 CSNK1G2-AS1Q8NCQ2 148 aa9.99□□□□□ -0.81
PTPRF-202ENST00000372405 LEPROTL1O95214 131 aa9.99□□□□□ -0.81
PTPRF-202ENST00000372405 SMIM17P0DL12 118 aa9.99□□□□□ -0.81
PTPRF-202ENST00000372405 FAM74A4Q5TZK3 123 aa9.99□□□□□ -0.81
PTPRF-202ENST00000372405 SUMO4Q6EEV6 95 aa9.99□□□□□ -0.81
PTPRF-202ENST00000372405 TMEM208Q9BTX3 173 aa9.99□□□□□ -0.81
PTPRF-202ENST00000372405 NXT2Q9NPJ8 142 aaKnown RBP9.99□□□□□ -0.81
PTPRF-202ENST00000372405 IGLL1P15814 213 aa9.98□□□□□ -0.81
PTPRF-202ENST00000372405 Q8N8P6 123 aa9.98□□□□□ -0.81
PTPRF-202ENST00000372405 ZNF747Q9BV97 191 aa9.98□□□□□ -0.81
PTPRF-202ENST00000372405 CMYA5Q8N3K9 4069 aa9.98□□□□□ -0.81
PTPRF-202ENST00000372405 M0R2P5 195 aa9.97□□□□□ -0.81
PTPRF-202ENST00000372405 PKIAP61925 76 aa9.97□□□□□ -0.81
PTPRF-202ENST00000372405 IL17DQ8TAD2 202 aa9.97□□□□□ -0.81
PTPRF-202ENST00000372405 SUMO2P61956 95 aaKnown RBP9.97□□□□□ -0.81
PTPRF-202ENST00000372405 GTSCR1Q86UQ5 136 aa9.97□□□□□ -0.81
PTPRF-202ENST00000372405 RNASE8Q8TDE3 154 aaKnown RBP9.97□□□□□ -0.81
PTPRF-202ENST00000372405 BTF3P20290 206 aaKnown RBP9.96□□□□□ -0.81
PTPRF-202ENST00000372405 UFSP1Q6NVU6 142 aa9.96□□□□□ -0.81
PTPRF-202ENST00000372405 PTH2Q96A98 100 aa9.96□□□□□ -0.81
PTPRF-202ENST00000372405 SMIM2Q9BVW6 85 aa9.96□□□□□ -0.81
PTPRF-202ENST00000372405 F5H697 171 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 WIPF1O43516 503 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 MORN3Q6PF18 240 aaPredicted RBP9.95□□□□□ -0.82
PTPRF-202ENST00000372405 TEX43Q6ZNM6 134 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 C20orf78Q9BR46 151 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 MRPL16Q9NX20 251 aaKnown RBP9.95□□□□□ -0.82
PTPRF-202ENST00000372405 M0QY20 66 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 TCAPO15273 167 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 HBDP02042 147 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 ZNF56Q15929 161 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 PIK3CD-AS1Q5SR53 167 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 LURAP1LQ8IV03 231 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 ZNF664Q8N3J9 261 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 SPXQ9BT56 116 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 TMEM70Q9BUB7 260 aa9.95□□□□□ -0.82
PTPRF-202ENST00000372405 MCRIP2Q9BUT9 160 aaKnown RBP9.95□□□□□ -0.82
PTPRF-202ENST00000372405 PKD1L1Q8TDX9 2849 aa9.94□□□□□ -0.82
PTPRF-202ENST00000372405 TSTD3H0UI37 97 aa9.94□□□□□ -0.82
PTPRF-202ENST00000372405 SYS1-DBNDD2H3BUS1 97 aa9.94□□□□□ -0.82
PTPRF-202ENST00000372405 ZNF705AQ6ZN79 300 aaPredicted RBP9.94□□□□□ -0.82
PTPRF-202ENST00000372405 C1QTNF4Q9BXJ3 329 aa9.94□□□□□ -0.82
PTPRF-202ENST00000372405 HSPB8Q9UJY1 196 aa9.94□□□□□ -0.82
PTPRF-202ENST00000372405 PLAC8L1A1L4L8 177 aa9.94□□□□□ -0.82
PTPRF-202ENST00000372405 CFAP126Q5VTH2 177 aa9.94□□□□□ -0.82
PTPRF-202ENST00000372405 TMEM263Q8WUH6 116 aaKnown RBP9.94□□□□□ -0.82
PTPRF-202ENST00000372405 GOLT1BQ9Y3E0 138 aa9.94□□□□□ -0.82
PTPRF-202ENST00000372405 COL6A5A8TX70 2615 aa9.93□□□□□ -0.82
PTPRF-202ENST00000372405 IGHV3-73A0A0B4J1V6 119 aa9.93□□□□□ -0.82
PTPRF-202ENST00000372405 DDTP30046 118 aa9.93□□□□□ -0.82
PTPRF-202ENST00000372405 FCER1GP30273 86 aa9.93□□□□□ -0.82
PTPRF-202ENST00000372405 DEFA6Q01524 100 aa9.93□□□□□ -0.82
PTPRF-202ENST00000372405 NEGR1Q7Z3B1 354 aa9.93□□□□□ -0.82
PTPRF-202ENST00000372405 C3orf56Q8N813 242 aa9.93□□□□□ -0.82
PTPRF-202ENST00000372405 TMEM158Q8WZ71 300 aa9.93□□□□□ -0.82
PTPRF-202ENST00000372405 CSTL1Q9H114 145 aa9.93□□□□□ -0.82
PTPRF-202ENST00000372405 A8MWV9 139 aa9.92□□□□□ -0.82
PTPRF-202ENST00000372405 PPP1R17O96001 155 aa9.92□□□□□ -0.82
PTPRF-202ENST00000372405 POLR2KP53803 58 aaKnown RBP9.92□□□□□ -0.82
PTPRF-202ENST00000372405 LAGE3Q14657 143 aa9.92□□□□□ -0.82
PTPRF-202ENST00000372405 C14orf144Q96I85 54 aa9.92□□□□□ -0.82
PTPRF-202ENST00000372405 PRO1933Q9H354 126 aa9.92□□□□□ -0.82
PTPRF-202ENST00000372405 Q6ZSN1 163 aa9.92□□□□□ -0.82
PTPRF-202ENST00000372405 MAP1LC3CQ9BXW4 147 aa9.92□□□□□ -0.82
PTPRF-202ENST00000372405 NBEAL2Q6ZNJ1 2754 aa9.91□□□□□ -0.82
PTPRF-202ENST00000372405 TRBV6-5A0A0K0K1A5 114 aa9.91□□□□□ -0.82
PTPRF-202ENST00000372405 RPL32P62910 135 aaKnown RBP9.91□□□□□ -0.82
PTPRF-202ENST00000372405 ATOH7Q8N100 152 aa9.91□□□□□ -0.82
PTPRF-202ENST00000372405 ST20Q9HBF5 79 aa9.91□□□□□ -0.82
PTPRF-202ENST00000372405 RS1O15537 224 aa9.9□□□□□ -0.82
PTPRF-202ENST00000372405 SHISA2Q6UWI4 295 aa9.9□□□□□ -0.82
PTPRF-202ENST00000372405 Q6ZTI0 123 aa9.9□□□□□ -0.82
PTPRF-202ENST00000372405 EDA2RQ9HAV5 297 aa9.9□□□□□ -0.82
PTPRF-202ENST00000372405 Q9UF83 564 aa9.9□□□□□ -0.82
PTPRF-202ENST00000372405 TRGV1A0A0A0MS02 117 aa9.9□□□□□ -0.83
PTPRF-202ENST00000372405 SDHAF1A6NFY7 115 aa9.9□□□□□ -0.83
PTPRF-202ENST00000372405 H0Y8G0 127 aa9.9□□□□□ -0.83
PTPRF-202ENST00000372405 P0DMU3 169 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 212.1 ms