RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 M0R2P5 195 aa14.31□□□□□ -0.12
CLN3-205ENST00000359984 SLAQ13239 276 aa14.31□□□□□ -0.12
CLN3-205ENST00000359984 GATD1Q8NB37 220 aa14.31□□□□□ -0.12
CLN3-205ENST00000359984 KIAA1644Q3SXP7 199 aa14.3□□□□□ -0.12
CLN3-205ENST00000359984 ZNF876PQ49A33 203 aa14.3□□□□□ -0.12
CLN3-205ENST00000359984 TMEM18Q96B42 140 aa14.3□□□□□ -0.12
CLN3-205ENST00000359984 APCSP02743 223 aa14.29□□□□□ -0.12
CLN3-205ENST00000359984 SYT8Q8NBV8 401 aa14.29□□□□□ -0.12
CLN3-205ENST00000359984 EVI2AP22794 236 aa14.29□□□□□ -0.12
CLN3-205ENST00000359984 CDPF1Q6NVV7 123 aa14.29□□□□□ -0.12
CLN3-205ENST00000359984 PTH2Q96A98 100 aa14.29□□□□□ -0.12
CLN3-205ENST00000359984 OVOL2Q9BRP0 275 aa14.29□□□□□ -0.12
CLN3-205ENST00000359984 TMEM191AQ9H0A3 160 aa14.29□□□□□ -0.12
CLN3-205ENST00000359984 DAZ2Q13117 558 aaKnown RBP14.28□□□□□ -0.12
CLN3-205ENST00000359984 OR10J3Q5JRS4 329 aa14.28□□□□□ -0.12
CLN3-205ENST00000359984 SBSPONQ8IVN8 264 aa14.28□□□□□ -0.12
CLN3-205ENST00000359984 JPT2Q9H910 190 aa14.28□□□□□ -0.12
CLN3-205ENST00000359984 RETNQ9HD89 108 aa14.28□□□□□ -0.12
CLN3-205ENST00000359984 NOP10Q9NPE3 64 aaKnown RBP14.28□□□□□ -0.12
CLN3-205ENST00000359984 TP53TG1Q9Y2A0 90 aa14.28□□□□□ -0.12
CLN3-205ENST00000359984 MRPL16Q9NX20 251 aaKnown RBP14.27□□□□□ -0.12
CLN3-205ENST00000359984 SERF1AO75920 110 aa14.27□□□□□ -0.13
CLN3-205ENST00000359984 JOSD1Q15040 202 aaPredicted RBP14.27□□□□□ -0.13
CLN3-205ENST00000359984 SRIP30626 198 aa14.26□□□□□ -0.13
CLN3-205ENST00000359984 EMP1P54849 157 aa14.26□□□□□ -0.13
CLN3-205ENST00000359984 SMIM15Q7Z3B0 74 aa14.26□□□□□ -0.13
CLN3-205ENST00000359984 AMN1Q8IY45 258 aa14.26□□□□□ -0.13
CLN3-205ENST00000359984 C14orf178Q8N769 122 aaPredicted RBP14.26□□□□□ -0.13
CLN3-205ENST00000359984 RASL10AQ92737 203 aa14.26□□□□□ -0.13
CLN3-205ENST00000359984 AP1S3Q96PC3 154 aa14.26□□□□□ -0.13
CLN3-205ENST00000359984 IGHV4-28A0A0C4DH34 117 aa14.25□□□□□ -0.13
CLN3-205ENST00000359984 MIFP14174 115 aa14.25□□□□□ -0.13
CLN3-205ENST00000359984 PIK3CD-AS1Q5SR53 167 aa14.25□□□□□ -0.13
CLN3-205ENST00000359984 FAM104BQ5XKR9 115 aa14.25□□□□□ -0.13
CLN3-205ENST00000359984 Q8NAQ8 132 aa14.25□□□□□ -0.13
CLN3-205ENST00000359984 TRGV1A0A0A0MS02 117 aa14.25□□□□□ -0.13
CLN3-205ENST00000359984 Q6ZTI0 123 aa14.25□□□□□ -0.13
CLN3-205ENST00000359984 MRAPQ8TCY5 172 aa14.25□□□□□ -0.13
CLN3-205ENST00000359984 LGALS9BQ3B8N2 356 aa14.24□□□□□ -0.13
CLN3-205ENST00000359984 BAGE3Q86Y29 109 aa14.24□□□□□ -0.13
CLN3-205ENST00000359984 RNF185Q96GF1 192 aa14.24□□□□□ -0.13
CLN3-205ENST00000359984 SAMD10Q9BYL1 202 aa14.24□□□□□ -0.13
CLN3-205ENST00000359984 KIF25-AS1Q9Y6Z4 181 aa14.24□□□□□ -0.13
CLN3-205ENST00000359984 DEFB4AO15263 64 aa14.23□□□□□ -0.13
CLN3-205ENST00000359984 A0A087WWL8 130 aa14.23□□□□□ -0.13
CLN3-205ENST00000359984 RAB4AP20338 218 aa14.23□□□□□ -0.13
CLN3-205ENST00000359984 C18orf32Q8TCD1 76 aa14.23□□□□□ -0.13
CLN3-205ENST00000359984 ALKBH7Q9BT30 221 aaPredicted RBP14.23□□□□□ -0.13
CLN3-205ENST00000359984 DPH3P1Q9H4G8 78 aa14.23□□□□□ -0.13
CLN3-205ENST00000359984 CRYGDP07320 174 aa14.22□□□□□ -0.13
CLN3-205ENST00000359984 MRPL51Q4U2R6 128 aaKnown RBP14.22□□□□□ -0.13
CLN3-205ENST00000359984 NDUFAF3Q9BU61 184 aa14.22□□□□□ -0.13
CLN3-205ENST00000359984 LINC00315P59091 139 aa14.21□□□□□ -0.13
CLN3-205ENST00000359984 A8MWV9 139 aa14.21□□□□□ -0.14
CLN3-205ENST00000359984 SMIM17P0DL12 118 aa14.21□□□□□ -0.14
CLN3-205ENST00000359984 TM2D3Q9BRN9 247 aa14.21□□□□□ -0.14
CLN3-205ENST00000359984 GAGE12BA1L429 117 aa14.2□□□□□ -0.14
CLN3-205ENST00000359984 GAGE7O76087 117 aa14.2□□□□□ -0.14
CLN3-205ENST00000359984 GAGE12FP0CL80 117 aa14.2□□□□□ -0.14
CLN3-205ENST00000359984 GAGE12GP0CL81 117 aa14.2□□□□□ -0.14
CLN3-205ENST00000359984 GAGE12IP0CL82 117 aa14.2□□□□□ -0.14
CLN3-205ENST00000359984 FAM74A4Q5TZK3 123 aa14.2□□□□□ -0.14
CLN3-205ENST00000359984 CFAP126Q5VTH2 177 aa14.2□□□□□ -0.14
CLN3-205ENST00000359984 POM121L12Q8N7R1 296 aa14.2□□□□□ -0.14
CLN3-205ENST00000359984 RS1O15537 224 aa14.19□□□□□ -0.14
CLN3-205ENST00000359984 MGPP08493 103 aa14.19□□□□□ -0.14
CLN3-205ENST00000359984 FAM222AQ5U5X8 452 aa14.18□□□□□ -0.14
CLN3-205ENST00000359984 SPATA25Q9BR10 227 aa14.18□□□□□ -0.14
CLN3-205ENST00000359984 IQCJQ1A5X6 159 aa14.18□□□□□ -0.14
CLN3-205ENST00000359984 UFSP1Q6NVU6 142 aa14.18□□□□□ -0.14
CLN3-205ENST00000359984 LYRM9A8MSI8 78 aa14.17□□□□□ -0.14
CLN3-205ENST00000359984 SMKR1H3BMG3 65 aa14.17□□□□□ -0.14
CLN3-205ENST00000359984 LINC00612Q8N6U2 182 aa14.17□□□□□ -0.14
CLN3-205ENST00000359984 DKK2Q9UBU2 259 aa14.17□□□□□ -0.14
CLN3-205ENST00000359984 TRGV2A0A075B6R0 118 aa14.16□□□□□ -0.14
CLN3-205ENST00000359984 IGHV3-73A0A0B4J1V6 119 aa14.16□□□□□ -0.14
CLN3-205ENST00000359984 TRAV26-2A0A0B4J265 109 aa14.16□□□□□ -0.14
CLN3-205ENST00000359984 D6R8Y8 96 aa14.16□□□□□ -0.14
CLN3-205ENST00000359984 GAS8-AS1O95177 125 aa14.16□□□□□ -0.14
CLN3-205ENST00000359984 OR4C5Q8NGB2 326 aa14.16□□□□□ -0.14
CLN3-205ENST00000359984 U3KQK5 164 aa14.16□□□□□ -0.14
CLN3-205ENST00000359984 NCR2O95944 276 aa14.16□□□□□ -0.14
CLN3-205ENST00000359984 DEFB130BP0DP73 79 aa14.16□□□□□ -0.14
CLN3-205ENST00000359984 DEFB130AP0DP74 79 aa14.16□□□□□ -0.14
CLN3-205ENST00000359984 CKS2P33552 79 aa14.16□□□□□ -0.14
CLN3-205ENST00000359984 TRAV4A0A0B4J268 109 aa14.15□□□□□ -0.14
CLN3-205ENST00000359984 DEFA6Q01524 100 aa14.15□□□□□ -0.14
CLN3-205ENST00000359984 CELA1Q9UNI1 258 aa14.15□□□□□ -0.14
CLN3-205ENST00000359984 TENM3Q9P273 2699 aa14.14□□□□□ -0.15
CLN3-205ENST00000359984 F5H697 171 aa14.14□□□□□ -0.15
CLN3-205ENST00000359984 GATA1P15976 413 aaPredicted RBP14.14□□□□□ -0.15
CLN3-205ENST00000359984 ZNF56Q15929 161 aa14.14□□□□□ -0.15
CLN3-205ENST00000359984 ORMDL3Q8N138 153 aa14.14□□□□□ -0.15
CLN3-205ENST00000359984 MRAP2Q96G30 205 aa14.14□□□□□ -0.15
CLN3-205ENST00000359984 URB1-AS1Q96HZ7 61 aa14.14□□□□□ -0.15
CLN3-205ENST00000359984 ZNF479Q96JC4 524 aa14.14□□□□□ -0.15
CLN3-205ENST00000359984 IGHV3-53P01767 116 aa14.14□□□□□ -0.15
CLN3-205ENST00000359984 PPBPP02775 128 aa14.14□□□□□ -0.15
CLN3-205ENST00000359984 SUMO4Q6EEV6 95 aa14.14□□□□□ -0.15
CLN3-205ENST00000359984 B9D2Q9BPU9 175 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms